Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0980 ATGGTTTTTCATATGGGTATGGAGTTGAAACGCATCTTTTTCATTTTCATTGTCTGCTTCGAGCTCTGCATTTTGAGCTCCAATGGCGCTACAGTCCAGAATGAGATTATTATCGAGAGAGAAAGCTTGATTTCTTTCAAAGCTTCGTTAGAGACCTCTGAAATTCTGCCATGGAACTCAACAGTTCCTCACTGCTTTTGGGCCGGAGTTTCTTGCCGATTCGGTCGAGTTACAGAGCTGTCTCTTTCATCTCTTTCACTCAAAGGCCAACTCTCTCAGTCCCTTTTTAATATTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTCTTCTATGGCTCAATCCCACCTCAGGTATCCAATCTTCGGAGCTTGAAGGTGCTTGCTCTCGGCGGAAATCAGTTTTCCGGCGACTTCCCTATCGAACTCACTGAGTTGACTCGGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACAGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCAGTTACGGACTCTTGACCTCTCCGGCAATGCCTTCGTCGGAAATGTTCCGCCCCACATCGGAAACTTGACGAGGATTTTATCCTTGGACCTCGGCAACAATCTTTTATCAGGTTCACTTCCATTGACCATCTTTACTGAGCTTACATCTTTAACTTCTCTGGACATTTCAAACAATTCGTTTTCGGGTTCAATCCCACCTGAAATTGGTAATCTAAAGCATTTGACTGGGCTTTATATCGGCATTAACCACCTTTCCGGTGAGTTGCCTCCTGAAGTTGGTAACCTCGTATTGCTGGAGAACTTTTTTTCGCCGTCTTGTTCTTTAACTGGTCCATTGCCTGACGAACTATCCAACTTGAAATCATTGAGCAAACTGGATCTTTCATACAATCCACTTGGGTGTTCTATCCCTAAAACGATTGGTGAATTGCAGAACTTGACTATATTGAATCTGGTTTACACTGAGCTTAATGGTTCTATTCCTGCTGAGCTTGGGAGATGCAGAAATTTGAAAACATTGATGCTTTCTTTCAACTTTCTAACTGGGGAGTTGCCACAAGAGCTTTCTGAGCTTTCCATGTTGACATTTTCTGCTGAGAGGAATCAGCTTTCTGGGCCATTACCTTCCTGGCTTGGCAAATGGGATCATGTCGATTCTATTTTACTCTCGAGTAATCGGTTCACCGGCGAAATCCCACCTGAGATTGGAAATTGCTTGATGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAAATTTGTAATGCTGTATCCTTGACAGAGATTGATCTTGACAGTAATTTCCTTTCGGGTACGATTGATGACACATTTGTAATGTGTAAAAACCTTACGCAGTTGGTTTTGGTTGACAACCAGATTGTTGGTTCCATACCAGAGTACTTCTCAGACCTTCCCCTACTGGTTATCAACCTTGACTCCAACAATTTTACAGGTTCTTTACCGAGAAGTATATGGAACTCCATGGATTTGATGGAATTTTCTGCTGCAAATAACCAGTTAGAGGGTCATCTCCCTCCAGAAATTGGTTATGCAGCTTCCCTTGAGAGGCTTGTTCTCAGCAACAACAGGCTGACAGGCATAATACCAAATGAGATTGGTAATCTCACAGCCCTTTCTGTTCTAAATTTGAATTCAAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGAACTTACCACATTGGACCTTGGAAACAACAGTCTAAATGGGTCGATTCCAGAAAGACTTGCAGACCTTACTGAATTACAGTGCCTAGTTCTTTCACACAACAATTTATCTGGAGAAATACCTTCCAATCCGTCTGCTTATTTTCGACAGTTGACAATTCCTGATTTGAGCTTTGTTCAGCATCATGGTGTTTTTGATCTGTCTCACAATAGATTGTCTGGTACCATACCTGATGAACTGGGGAACTGTGTCGTTGTGGTAGATCTTTTACTCAACAATAATCTACTTTCTGGAGCAATTCCTAGATCTCTCTCAAAGTTAACAAACCTCACAACCTTGGATTTATCTGGCAATATGCTTACTGGTCCTATTCCTGCAGAGATTGGCAATGCTCTCAAGCTCCAAGGCCTGTATCTTGGGAATAATCACCTCATGGGAATGATCCCTGAAAGCTTCAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTAACTGGTAATAAATTATCTGGTTCGGTTCTGAAAACTTTTGGTGGTCTGAAAGCTCTAACTCATTTGGATTTAAGTTGTAATGAGTTGGATGGTGATCTTCCCTCTTCTCTGTCCAGTATGTTGAATCTTGTGGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTAATAACTATTTTGAGGGTGTTCTTCCACGAACATTGGGCAATCTTTCATACTTGACGACTTTGGATCTTCATGGAAATAAGTTCACAGGGCCAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAATACTTTGATGTTTCGAACAACAGGCTTTCAGGGGAGATTCCAGACAAAATATGCAGCCTCATCAATATGTTTTATCTGAATTTAGCAGAAAACAGTCTTGAAGGGCCAATTCCGAGAAGTGGCATTTGCCAGAATCTATCCAAAAGTTCACTTGCCGGTAACAAGGACCTTTGTGGGAGAATCCTGGGTTTCAATTGCCGGATCAAAAGCTTAGAAAGATCTGCAGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTTAGCGTTCTTATTGTTCTAACTGTGGCGTTTGCCATGAGAAGACGGATTATTAGAAGACAGAGAGATAATGATCCAGAGGAAATGGAGGAAAGTAAATTAAACAGTTTCATAGACCCCAATCTCTATTTCTTAAGCAGCAGCAGATCAAAAGAGCCTTTAAGCATCAATGTGGCCATGTTCGAGCAGCCCCTTCTGAAGTTAACTTTGGTTGATATCCTCGAAGCAACCAATAACTTCTGTAAAACAAAGATTATTGGAGATGGAGGATTCGGGACCGTCTACAAGGCCACTTTGCCTGATGGAAAAGTTGTTGCTGTGAAGAAGCTAAGCGAAGCGAAAACACAGGGGAATAGAGAATTCATTGCTGAAATGGAAACTATAGGCAAAGTAAAGCACCATAATCTTGTTCCATTGCTTGGCTACTGTTCTCTTGGGGAGGAGAAGCTTCTTGTGTATGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGAGAAACCGAACTGGTACTCTCGAAGTCCTTAACTGGGAGACTCGCTTCAAAGTCGCTTCAGGCGCAGCCCGTGGACTGGCATTTCTTCACCATGGATTCATACCCCATATCATTCACAGAGATGTTAAAGCAAGCAATATACTCCTCAACCAAGACTTTGAACCAAAAGTTGCTGACTTTGGATTGGCAAGATTGATCAGTGCTTGTGAGACTCATGTCACGACTGAGATTGCTGGAACCTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGCGGTCGACTACGAAAGGCGATGTTTACAGCTTCGGTGTGATTCTACTGGAATTGGTAACTGGGAAGGAACCAACTGGACCTGATTTTAAGGAGATTGAGGGTGGAAATTTGGTTGGCTGGGTGTTTCAGAAGATCAACAAGGGTCAGGCTGCAGATGTTCTGGATGCCACAGTTCTGAATGCTGATTCCAAGCATATGATGCTTCAAACTCTTCAGATTGCTTGTGTTTGCTTGTCAGAAAATCCTGCTAATAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3915 42.32 MVFHMGMELKRIFFIFIVCFELCILSSNGATVQNEIIIERESLISFKASLETSEILPWNSTVPHCFWAGVSCRFGRVTELSLSSLSLKGQLSQSLFNILSLSVLDLSNNFFYGSIPPQVSNLRSLKVLALGGNQFSGDFPIELTELTRLENLKLGTNLFTGKIPPELGNLKQLRTLDLSGNAFVGNVPPHIGNLTRILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLTGLYIGINHLSGELPPEVGNLVLLENFFSPSCSLTGPLPDELSNLKSLSKLDLSYNPLGCSIPKTIGELQNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNFLTGELPQELSELSMLTFSAERNQLSGPLPSWLGKWDHVDSILLSSNRFTGEIPPEIGNCLMLNHLSLSNNLLTGPIPKEICNAVSLTEIDLDSNFLSGTIDDTFVMCKNLTQLVLVDNQIVGSIPEYFSDLPLLVINLDSNNFTGSLPRSIWNSMDLMEFSAANNQLEGHLPPEIGYAASLERLVLSNNRLTGIIPNEIGNLTALSVLNLNSNLLEGTIPAMLGDCSELTTLDLGNNSLNGSIPERLADLTELQCLVLSHNNLSGEIPSNPSAYFRQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGAIPRSLSKLTNLTTLDLSGNMLTGPIPAEIGNALKLQGLYLGNNHLMGMIPESFSHLSSLVKLNLTGNKLSGSVLKTFGGLKALTHLDLSCNELDGDLPSSLSSMLNLVGLYVQENRLSGQVVELFPSSMTWKIETLNLSNNYFEGVLPRTLGNLSYLTTLDLHGNKFTGPIPSDLGDLMQLEYFDVSNNRLSGEIPDKICSLINMFYLNLAENSLEGPIPRSGICQNLSKSSLAGNKDLCGRILGFNCRIKSLERSAVLNAWSVAGIIIVSVLIVLTVAFAMRRRIIRRQRDNDPEEMEESKLNSFIDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTKIIGDGGFGTVYKATLPDGKVVAVKKLSEAKTQGNREFIAEMETIGKVKHHNLVPLLGYCSLGEEKLLVYEYMVNGSLDLWLRNRTGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDE 1304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9047551 9051465 + CrPI670011_05g009800.1 Cre05g0980 497493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0980 1304 SUPERFAMILY L domain-like 57 367 - -
Cre05g0980 1304 Gene3D Phosphorylase Kinase; domain 1 989 1101 - -
Cre05g0980 1304 SUPERFAMILY L domain-like 642 918 - -
Cre05g0980 1304 SUPERFAMILY Protein kinase-like (PK-like) 1007 1298 IPR011009 -
Cre05g0980 1304 SMART LRR_sd22_2 458 484 - -
Cre05g0980 1304 SMART LRR_sd22_2 577 603 - -
Cre05g0980 1304 SMART LRR_sd22_2 855 881 - -
Cre05g0980 1304 SMART LRR_sd22_2 685 717 - -
Cre05g0980 1304 SMART LRR_sd22_2 219 245 - -
Cre05g0980 1304 SMART LRR_sd22_2 757 786 - -
Cre05g0980 1304 SMART LRR_sd22_2 291 317 - -
Cre05g0980 1304 SMART LRR_sd22_2 170 196 - -
Cre05g0980 1304 Pfam Leucine rich repeat 810 868 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine rich repeat 436 494 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine rich repeat 556 614 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 ProSitePatterns Protein kinases ATP-binding region signature. 1032 1055 IPR017441 GO:0005524(InterPro)
Cre05g0980 1304 SUPERFAMILY L domain-like 372 635 - -
Cre05g0980 1304 SMART serkin_6 1026 1298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0980 1304 PRINTS Leucine-rich repeat signature 685 698 - -
Cre05g0980 1304 PRINTS Leucine-rich repeat signature 222 235 - -
Cre05g0980 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 367 480 IPR051564 GO:0016020(PANTHER)
Cre05g0980 1304 FunFam Leucine-rich repeat receptor-like protein kinase 38 189 - -
Cre05g0980 1304 ProSiteProfiles Protein kinase domain profile. 1026 1304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g0980 1304 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 633 929 - -
Cre05g0980 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1148 1160 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0980 1304 FunFam leucine-rich repeat receptor protein kinase EMS1 217 366 - -
Cre05g0980 1304 Gene3D Ribonuclease Inhibitor 148 215 IPR032675 -
Cre05g0980 1304 Gene3D Ribonuclease Inhibitor 38 147 IPR032675 -
Cre05g0980 1304 Gene3D Ribonuclease Inhibitor 295 368 IPR032675 -
Cre05g0980 1304 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Cre05g0980 1304 FunFam serine/threonine-protein kinase BRI1-like 2 988 1101 - -
Cre05g0980 1304 FunFam Uncharacterized protein 367 631 - -
Cre05g0980 1304 Gene3D Ribonuclease Inhibitor 627 928 IPR032675 -
Cre05g0980 1304 Gene3D Transferase(Phosphotransferase) domain 1 1102 1304 - -
Cre05g0980 1304 FunFam serine/threonine-protein kinase BRI1-like 2 1102 1304 - -
Cre05g0980 1304 SMART LRR_typ_2 711 732 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 170 193 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 291 315 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 685 709 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 194 218 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 831 855 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 530 552 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 98 122 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 757 781 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 219 243 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 733 756 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 553 577 IPR003591 -
Cre05g0980 1304 SMART LRR_typ_2 601 624 IPR003591 -
Cre05g0980 1304 Pfam Leucine Rich Repeat 760 781 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 687 708 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 413 433 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 643 661 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 172 194 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 391 410 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 341 363 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 711 733 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Pfam Leucine Rich Repeat 735 757 IPR001611 GO:0005515(InterPro)
Cre05g0980 1304 Gene3D Ribonuclease Inhibitor 369 626 IPR032675 -
Cre05g0980 1304 Pfam Protein tyrosine and serine/threonine kinase 1029 1297 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g0980 1304 Gene3D Ribonuclease Inhibitor 216 294 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0606 Cre-Chr1:5325444 Cre05g0980 Cre-Chr5:9047551 1.10E-67 dispersed
Cre05g0980 Cre-Chr5:9047551 Cre11g0587 Cre-Chr11:2970653 1.10E-80 dispersed
Cre04g1217 Cre-Chr4:30864674 Cre05g0980 Cre-Chr5:9047551 1.70E-91 transposed
Cre06g2613 Cre-Chr6:33779339 Cre05g0980 Cre-Chr5:9047551 5.00E-55 transposed
Cre08g0823 Cre-Chr8:21347111 Cre05g0980 Cre-Chr5:9047551 2.80E-64 transposed
Cre09g1847 Cre-Chr9:36870325 Cre05g0980 Cre-Chr5:9047551 3.00E-90 transposed
Cre11g0631 Cre-Chr11:3497722 Cre05g0980 Cre-Chr5:9047551 2.00E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64134 PF07714 PK_Tyr_Ser-Thr 6.20E-46 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0980 - - - 0.0