Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0981 ATGTATCTGCAAATTCTTTCAACATACAGGAATTTGCTTCTTCATGTTGGTCTCTCTCTCTCGCTTTCTGTTTTCATCATCTTCTTCAAAATCCCAACCCTTTTCCTTCATGGCATATTCACCTACATCCACCCTGATAACACCAACAGCGGCGTCCGAGCCGCGATTAGAAGACCTGACGGCTCTAACTCCGGTTCAGGACTAGAGGGGTACCGAAACTTGTCCTCAACTGGTGCCGCTGAGATCAGGAAAAGAACAAAGTCGAAGGACAAGGTTGAGTTTGACGAAAGCACGGCGCAGATCTTCAGGTTAAAGCTGGATGAAAATCATCTGCAAACGCGGATCTATTTCAAAGAATACAGAGATGGTTTCACTTTTTCATTTGTGGGTATTTCTTGTTTACTGCTGCAAATTTTCTTGGGTGCATCAAAAACTTCTGGGGTTTGGGGAAATGGAATTTTTGTTCCTCTTCTGTTTGCGATCTTTGCTGGATGTAAGCTGTTTGTATCTCTCACAAAGGTTGCTTTGGAGAAATCTGCGTCCAGGACGTTGGATAGGCAATTGAGTTTGCTCTTTGGAGTTTCTGGGTTTCTTTTTGGACTTTTAACTTGTTCTGCTTTTAGCCCTCTTATATTGGATTTTGATCTTGGTGAAGTTGGTGGTTCGGGGGCTTGTTTCGTTTCTATCTTAATGGGCTGTTGTGCTGGGTTTTTGTTTATACCTGCAACCAAAATCGCTCGATCATTTTGGCTTGGAACTGATCAAATTAGATGCAATTTGGATATGGTTTATTGTGGATGGTTTTCTCGGATGGTTTTGTATTCAAGTCAGCTAGTCATGGCTTTCACCACCTTGCTTTGGGTTAACCCATTAGCTGAAATTTTCATTAACAAGAACATCGGCGAAGGTACAATTAAACATATGTCTAGTGAAATCCGAAATGCTGACAGATTGGTCGGAAGTATGGGATTCTCAAAGGCAGATTTCATCAAGCTTAGGCTCTGGTGTTTGTCACTGTCGGGTTTCTTGCAAATCATCGCAGTAAGGCAAAACTTGCAAATGTATCTGAACGAAGCTTTGTTATCTTGGTATCAAAGATTGCATGCTGGGAAAGTTCCTGACTTGGATTTCAGTAGAGCAAAGGTTTTTCTGCACAATCACTACTTATGTGTGTCTGCTTTGCAGTTCTTTGCTCCACCAGCCTTAGTTTTGCTTTTTGTTGGGTTATCTCAAATTGGTATTAACTCTTTGGAAAATACCAATTTGTGGCGTCTTCTTCAATCTTTGCCAGTTCAGGGGAAAGAGAAAAATCTCAGTCATGCACATCTTCCCTTCCCATCACTTGGAAGCAAAAAAATCTTGTCTTCCTCCTTCTTCCACGAACCTTCTAGAATTGAAATTCCAGTGCCGTACCTGGAAAATTCTCCCAACTATTCCTCTAAAATTCTCATACCGAAGCTTTCCTTAGGGTTTGGGAGTTGCGACCGATCATTCCGGGATCTGATTTCGTTGATTCTTGGGGTTCCTCTCATGGAGGACCCGACCGCCAAGCAGAAGCCTACTGCAGGCGATTCACAGAGATCTGTGCCCACTCCTTTCTTGACGAAAACTTATCAGCTCGTTGACGACGAGACAATTGACCATGTCATTTCATGGAACGACGACGGATCTACCTTCATCGTCTGGAACACCATGGCTTTCGCCAGAGATTTGCTCCCCAAGTATTTCAAGCACAATAACTTCACCAGCTTTCTCCGTCAGCTCAATACTTATGGATTTAGAAAGGTTGTATCGGATCGTTGGGAGTTTGCGAACGAGTGCTTTCGTAAGGGCAAGAAACAGCTTCTTTGTGAGATTCAGCGTCGGAAATTGGCCGCTCCGGTGCCGTCCACTGCGACGATTCCGTCTGAGCAACTATTAACATTGACGGGGAATTCTTCCGGTGAAGAACAAGTGATTTCGTCTGATGAGACTCCGACGAGAGCTCTTGCAGAGCTGATCGATGAGAACGATCGGCTGAGAAAAGAGAAAGTTCAGCTTACGGAACAATTGGTTGAAGTGAAATCTCTGTGCAACAACATCTTCTCGTTGATGTCGAGCTTCGTTGAAAGTCAGTTTAAGAGCAGCTTTAAAGTGAGAGAGAGCGTTTTAACATCCGCAAAATCGCTCGATCTTTTCCCGGTGAAGCGGGCTTCCGGTGAAGACGAAACGACGGAGGCCGAGGAGGAGGAGACGAATCAGATCGTCGCGAAGCGACCGAGGGAATATAGGGAAGTGGCGACGGAGACGGCGGAGGATGATACTGCTTTGCGGCTTCAACCACCGAATAGATCGGAAGTCTTATCAGAGCGGATAAATTGTCAAAATAAAGTTGATGATCAGAAAACGTGGCATAATCAGGTCCACTGA 2409 44.33 MYLQILSTYRNLLLHVGLSLSLSVFIIFFKIPTLFLHGIFTYIHPDNTNSGVRAAIRRPDGSNSGSGLEGYRNLSSTGAAEIRKRTKSKDKVEFDESTAQIFRLKLDENHLQTRIYFKEYRDGFTFSFVGISCLLLQIFLGASKTSGVWGNGIFVPLLFAIFAGCKLFVSLTKVALEKSASRTLDRQLSLLFGVSGFLFGLLTCSAFSPLILDFDLGEVGGSGACFVSILMGCCAGFLFIPATKIARSFWLGTDQIRCNLDMVYCGWFSRMVLYSSQLVMAFTTLLWVNPLAEIFINKNIGEGTIKHMSSEIRNADRLVGSMGFSKADFIKLRLWCLSLSGFLQIIAVRQNLQMYLNEALLSWYQRLHAGKVPDLDFSRAKVFLHNHYLCVSALQFFAPPALVLLFVGLSQIGINSLENTNLWRLLQSLPVQGKEKNLSHAHLPFPSLGSKKILSSSFFHEPSRIEIPVPYLENSPNYSSKILIPKLSLGFGSCDRSFRDLISLILGVPLMEDPTAKQKPTAGDSQRSVPTPFLTKTYQLVDDETIDHVISWNDDGSTFIVWNTMAFARDLLPKYFKHNNFTSFLRQLNTYGFRKVVSDRWEFANECFRKGKKQLLCEIQRRKLAAPVPSTATIPSEQLLTLTGNSSGEEQVISSDETPTRALAELIDENDRLRKEKVQLTEQLVEVKSLCNNIFSLMSSFVESQFKSSFKVRESVLTSAKSLDLFPVKRASGEDETTEAEEEETNQIVAKRPREYREVATETAEDDTALRLQPPNRSEVLSERINCQNKVDDQKTWHNQVH 802
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9052955 9058290 - CrPI670011_05g009810.1 Cre05g0981 497494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0981 802 SUPERFAMILY Winged helix DNA-binding domain 530 622 IPR036390 -
Cre05g0981 802 FunFam Heat stress transcription factor B-4 525 623 - -
Cre05g0981 802 Coils Coil 663 690 - -
Cre05g0981 802 SMART hsfneu3 529 622 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0981 802 Gene3D - 525 623 IPR036388 -
Cre05g0981 802 PANTHER RE42071P 7 410 IPR019395 -
Cre05g0981 802 Pfam HSF-type DNA-binding 533 622 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0981 802 MobiDBLite consensus disorder prediction 760 802 - -
Cre05g0981 802 Pfam Predicted transmembrane protein 161AB 227 407 IPR019395 -
Cre05g0981 802 ProSitePatterns HSF-type DNA-binding domain signature. 572 596 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0981 802 PRINTS Heat shock factor (HSF) domain signature 571 583 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0981 802 PRINTS Heat shock factor (HSF) domain signature 584 596 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0981 802 PRINTS Heat shock factor (HSF) domain signature 533 556 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g0981 802 MobiDBLite consensus disorder prediction 786 802 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0981 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0981 Cre-Chr5:9052955 Cre05g2189 Cre-Chr5:33611874 1.90E-43 dispersed
Cre04g0452 Cre-Chr4:16562941 Cre05g0981 Cre-Chr5:9052955 5.70E-37 transposed
Cre04g1911 Cre-Chr4:36692511 Cre05g0981 Cre-Chr5:9052955 4.60E-28 transposed
Cre05g0981 Cre-Chr5:9052955 Cre09g2219 Cre-Chr9:41352096 1.20E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g621 . . . Bda07g01857 . . . . . Cmo18g01260 . . . . . . . Bhi01g01342 . . . Hepe07g0172 . . . . . . . . . . . . . Lsi05g01244 . . Cme06g00982 . . . . . . . . . . . . Cma18g01238 . Car18g01141 . . . . . . . . . Cla05g00865 Cam05g0952 Cec05g0957 Cco05g0957 Clacu05g0939 Cmu05g0897 Cre05g0981 . Csa03g01696 Chy06g00931 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53666 PF10268 Tmemb_161AB 6.10E-13 No_clan Cre TF