Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0986 ATGGATTATCCTCTACAACTCTCCCCTTCAAAATTCTCTACGACCCATTTTTCTGGATCTTTCGATTGGTTCTTTGGACCCAAAAACCCAGCTCTGATTCGAATGTACCACCGCTTAAAGTGGAGGAGTATGGTAAGTAGTTGGGAGCAAAGCAGAGGATTGAAACCGCTAGAGGTTCCGGACCCGCCCAAGGGCAAGCCAAGCCGAAACCTCTCCACTGGAGAAATGGGAGTAAAGAACTTCTGGGATATCTTAGAATCGTGCAAGAAGACTCTCCCACTTCACCGTCTTCAGAATAAGAGGTTGTGCATCGATCTCTCATGTTGGATAGTTCAGCTTCAAAATGTAAGCAAATCCCATTCCCGTTTGAATAATAAGATTTACTTGAAAGGGCTCTTTCACCGCCTTCGAGCTCTCATTGCCTTGAATTGCAGCCTTATTTTCGTTACAGATGGTTCAATTCCTGGGATTAAACTGTCAACTTATAGACGCCGCTTGAACAATGGAAATGAGGTTGCTCAAAATGATGCAAATCCCCAGCAAATATGCTCACTAAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGATTGGCGCTTGGTATCCCTTGTCTAGATGGGCTTGAGGAAGCTGAAGCACAATGTGCATTGCTAAATTCAGAATTCTTATGCGATGGATGTTTTACTTCAGATTCAGATGCTTTCCTTTTTGGTGCTAGGACGGTGTATAGGGATATCTGCCTTGGAGATTCCGGTCATGTAGTTTGTTATGAAATGGATGACATCGAAAGACAATTAGGATTCGGAAGGAACTCAATGATTACGTTGGCTCTACTTCTTGGGAGTGACTACTCGCAGGGCGTTTATGGCATGGGTCGCGATTCTGCTTGTCAGATTGTTAAAGCAGTAGGAGACAGTGCTGTCCTCCAAAAAATTGCATCTGAGGGACTGTCTTTCGCTAAGAAGGGGAAGAATTCCAAGAAGCAAGGACTTCCTAATTCTGGGAATGGACAGTATATGCATAAATGCGATCAGTTTTCAGAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGAAGCCGTGAGTAGGGTTCTTGTTCAGCACCCTTTTCAACGTATCAAACTTCAGCGGATATGCGCCGAATTTTTCGCATGGCTTCCTGAGAAAACAGATGAATACATTCTCCCAAAGGTAGCAGAAAGAGATCTACGGCGATTTGCAAACATTCGATCTAAAACATCAGAACTTGGTTTCAATATTCCACTTCAACAGGTACCAGTTAATTGTCCTGTTTCTGGAATTGTCAAGCACCGAAAAGTCCAAGGCAATGACTGCTATGAGGTTTCTTGGAAAAATATTGATGGACTTGATTCATCTGTTGTGCCAGCAGATCTCTTGCAGAGTGCCTGTCCCGAGATGATTATAGAATTTGAGGAGCAAAGGGCTGAAGGAAGAAAACAAAATAAGCGCAAAACTAAAACAAAGAAGTCGGAGGCTGCTGTGGCTGAAATTGATAAAAGACTTCAAACTTTGTTGCTTGATATTGAATCTGAAAGCAGGGCAGCTCATAATCTCTCCCAGGTTTCAATAGTTTCAGAGACTTCTGGCACTGGTGTTGATGAACTGAACCAAGAGCGATTTCCTGACGTTGAACCAATCATTGTCGATCATGCTCGTAGCTGTAGCAAAGAGAGGATTGAGGTCATTAATCTCTTAAGCCCTTCACCTGCAATGCAAACCCGTGAGGCTTCAAAATTTCAACAGAAAAATAGTCAAAAGATTGATGTAATTGATTTGAGTGATACAGAAACTGACCAGTCACCTGAACATGAGAGAAAGGCTAGAGAGTTGAGATCTTTCTTAGCTACTTTAAAGGAGGCGTTTTCCTTACTGCTCACCCAAAAAAAACCCATTGATTATCCACTTCAAGATGAGTAA 1974 42.35 MDYPLQLSPSKFSTTHFSGSFDWFFGPKNPALIRMYHRLKWRSMVSSWEQSRGLKPLEVPDPPKGKPSRNLSTGEMGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVSKSHSRLNNKIYLKGLFHRLRALIALNCSLIFVTDGSIPGIKLSTYRRRLNNGNEVAQNDANPQQICSLKRNKGSEFSLMIKEAKALGLALGIPCLDGLEEAEAQCALLNSEFLCDGCFTSDSDAFLFGARTVYRDICLGDSGHVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRDSACQIVKAVGDSAVLQKIASEGLSFAKKGKNSKKQGLPNSGNGQYMHKCDQFSEVIDAYLKPKCHSADSEAVSRVLVQHPFQRIKLQRICAEFFAWLPEKTDEYILPKVAERDLRRFANIRSKTSELGFNIPLQQVPVNCPVSGIVKHRKVQGNDCYEVSWKNIDGLDSSVVPADLLQSACPEMIIEFEEQRAEGRKQNKRKTKTKKSEAAVAEIDKRLQTLLLDIESESRAAHNLSQVSIVSETSGTGVDELNQERFPDVEPIIVDHARSCSKERIEVINLLSPSPAMQTREASKFQQKNSQKIDVIDLSDTETDQSPEHERKARELRSFLATLKEAFSLLLTQKKPIDYPLQDE 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9087777 9093496 + CrPI670011_05g009860.1 Cre05g0986 497499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0986 657 MobiDBLite consensus disorder prediction 589 607 - -
Cre05g0986 657 Gene3D - 441 508 - -
Cre05g0986 657 Gene3D - 77 274 - -
Cre05g0986 657 CDD H3TH_XPG-like 278 321 - -
Cre05g0986 657 SMART xpgineu 205 275 IPR006086 GO:0004518(InterPro)
Cre05g0986 657 Pfam XPG N-terminal domain 76 166 IPR006085 GO:0004518(InterPro)
Cre05g0986 657 SUPERFAMILY PIN domain-like 78 290 IPR029060 -
Cre05g0986 657 MobiDBLite consensus disorder prediction 608 625 - -
Cre05g0986 657 SUPERFAMILY Chromo domain-like 443 494 IPR016197 -
Cre05g0986 657 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 76 596 IPR006084 GO:0017108(PANTHER)
Cre05g0986 657 SMART xpgn3 76 172 IPR006085 GO:0004518(InterPro)
Cre05g0986 657 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 275 422 IPR036279 -
Cre05g0986 657 Pfam XPG I-region 208 290 IPR006086 GO:0004518(InterPro)
Cre05g0986 657 FunFam Flap endonuclease GEN-like 1 275 333 - -
Cre05g0986 657 CDD PIN_GEN1 77 273 - -
Cre05g0986 657 Gene3D - 276 334 - -
Cre05g0986 657 ProSiteProfiles Chromo and chromo shadow domain profile. 441 501 IPR000953 -
Cre05g0986 657 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 221 IPR006084 -
Cre05g0986 657 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 99 113 IPR006084 -
Cre05g0986 657 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 245 IPR006084 -
Cre05g0986 657 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 280 295 IPR006084 -
Cre05g0986 657 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 165 IPR006084 -
Cre05g0986 657 CDD CSD 446 493 - -
Cre05g0986 657 MobiDBLite consensus disorder prediction 589 625 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0986 K15338 - - csv:101214962 959.133
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0986 Cre-Chr5:9087777 Cre10g1583 Cre-Chr10:29874885 2.80E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35