Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g0987 ATGTCTTATTCCCACAACTCCTCATTCCATTCTATAGAGAACGGAAAAGCGCGCCAAAGCTATGGCCACTGTCTCTGTACAAATGCCAATGCGTTCGTGTGTGTGAGAAGAAGCAACAACTCATTGTGTTCAGCAAATTTCATGGGGAAACAGAAGCAACAAGTGATTTCTCGATTCTTTGCTCCAAAACCCAAGTCCCCATCTCTTTCTTCTTCTTCCTCCGCCGCCGCCTTAACTTCGCCGACCCAACCTTTTTCACCTCCTAAGATATCAGCCACAGTCACTTTCTCCCCTTCCAAACGCCTCATTTCTTCTGCACTCGCCTCTCAATCAACACCACCCAAATCCTCTAAACGCCCAAAACTCTCTCCTCATACCCAAAACCCTCTGCCTTCCGTTCCCAATGCCTCACTTCATAAAAGATTCCTCCACAAGTTCCTTGAACCCACGGATGACTCTTTCGAACCTTCTAATCAAAACCCCAGAATCTCAACGGTCGCTGATGTCAAATACACCCCTTTGGAGCTACAAGTTGTGGACCTTAAGAAGAGGTACCCTGATGTTCTTCTCATGGTGGAGGTTGGTTACAGGTATAGATTTTTTGGCCAAGATGCTGAAATAGCGGCTCGTGTTTTGGGTATTTATGCTCATTTGGATCATAATTTTATGACTGCGAGTATACCCACGTTTAGATTGAATGTGCATGTGAGGAGGCTGGTTAGTGCAGGGTATAAGGTGGGTGTTGTTAAGCAAACCGAAACTGCTGCGATTAAGGCTCATGGGTCGAATAAGTTAGGCCCCTTTTGTAGGGGATTATCGGCTTTGTATACTAAATCAACATTGGAGGCAGCCCAGAATTTTGGGGGAGCTGAAGAGGGATGTGGTGGAGAGAGTAATTACTTGTTCTGTGTGGTTGAAAATAGTATGTTGGTGGATAATTTGGACTTTAGAATCGAAAATGGGGTTGATGTGAAAATTGGGATGGTTGCCATGGAGATATCAACTGGGGATGTTATTTATAGGGAATACGATGATAACTTTATGAGAAGTGGGCTTGAGGCAATGCTCTTGAGCTTGTCTCCTGCTGAGTTACTTCTTGGGGATCCCATATCAAAGCCAACAGAGAAGTTATTACTAGGTTATGCTGGACCTGCTTCAAATGTCCGTGTGGAGCATGTTTCACGAGATTGCTTTAAAGATGGCAGTGCACTTGCTGAAGTGATGTCTTTATATGAAAACATTGACAAAGATAACTTAGCCGAACATAACAACCCTGAAACGGTGTTGGTTGGACAAAAAAGTGATCGCACAGCAATTAAGGAAATAGTGAACATGCCAAATTTAGCTCTTCAAGCATTGGCCTTAACCATTCGTCACTTGAAGCAGTTTGGTTTAGAAAGGATTGTGTCTTTGGGATCCTCTTTTAGGCCATTCTCATGCAAAATGGAGATGACCCTCTCAGGCAATACACTTACACAACTCGAGGTTTTGAAGAATAATGATGACGGTTCACAAACTGGATCTTTATTACAGTGCATGAATCATACTCTTACAATATTTGGTTCAAGGCTTCTTCGCCAATGGATAACACATCCTTTATGTGATAGAGACATGATAATTGCTCGTCAAGAGGCTGTTTCCGAGATTGCTGCATCTATGGTATCTTCAAAAGTATCTCAAAATAACAGAGTGTTGGATGAAGAAGATTCGGATGTAATGGTCATTGAACCAGAATTGAATTATATACTTTCTTCGGTGTTGACAACCTTGGGAAGGGCACCAGATATTCAGCGTGGAATAACAAGAATCTTTCACCGAACAGCAGCCCCATCAGAGTTCATTGCAGTTATTCAAGCTATTCTATTTGCGGGAAAACAGCTTCAGCAGTTTCACATTCATGAAGAGGATGACAATTATTCCAGTGAAAGTATGATTGGCTCCAAGCTCCTCAGAAAGCTGATTTTATCTGCTTCTTCCTCCAGTTTAATAAACATTGCTGCAAAGCTTTTGTCAATGATCAGCAAAGAAGCTGCAGATCAAGGGGACTTTCCTAACCTAATGATCATCTATGGTGACCAATTTCCAAAGGTTGCTAGAGCTCGGAAGGAGGCTCAATCTGCAAGAGAGAAATTGGATTCTCTGATCACCTTATACCGCAAGCACCTTGGAATGCGGAAGTTGGAGTTCACTAGTGTGTCTGGAACTACACATTTGATTGAGTTAGCCTTAGATGTAAAGGTGCCTTCAAATTGGGTTAAGGTCAATAGTACCAAGAAAACCGTAAGGTATCACCCACCTGAAATATTGGCTGCGTTAGACGAGCTATCGCTGGCAAATGAGGAGCTCATGGTGGCATCTCGTGATGCTTGGGATGGCTTTCTAAGTGGATTCAGCAGATATTATGCAGAGTTCCAAGCTGCTGTTCAAGCATTGGCTTCCATCGATTGTCTGTATTCGTTAGCAATTCTCTCAAGAAATAAGAACTATGCTCGCCCAGAGTTTGTGCATGATGATGAACCTGCTCAGATACTTATATGCTCCGGACGCCATCCGGTTTTGGAAGGTACATTGCAAGGCAATTTTGTCCCGAATGACACAAATTTGGACGTGAATGGAGAGCATTGTCAAATTGTAACAGGACCAAACATGGGGGGGAAAAGTTGCTACATTCGACAAGTTGCTCTCATTGCTCTAATGGCTCAGGTTGGTTCCTTTGTACCGGCACTCTCTGCCAAACTTCATGTCCTGGATGGCATATACACTCGAATGGGTGCTTCTGACAGTATTCAACAAGGTAGAAGCACTTTCTTAGAAGAAATGACTGAGACTTCACATATACTCCATCATTCCACATCGCGTTCCTTGGTCATAATTGACGAACTTGGGAGAGGTACAAGCACCCACGATGGTGTGGCCATTGCATATGCAGCTTTGCATAATCTTCTCCAGCAGAAGAAATGTTTGGTCCTTTTTGTCACCCACTATCCTAAAGTTGCTGAGATTGCAAAGGAGTTCCCAGCATCTGCGGGGGTATACCATGTTTCATATCTTACTTCACACAAAAATCCAAGCTTGTCGGGCCCAAAATCGACTGAGGAGGATGTGACTTACCTATATAAACTTGTTCCTGGTGTTGCGGAGAGTAGTTTTGGTTTCAAGGTTGCCCAACTTGCACAGATACCTTTATCATGTATTGCACGGGCCACAGAGATGGGGGTCTGGTTAGAAGAAATAGTAACAAGAAGAGCACAGCGTAAATCCACAGAACAGCATTCGCAAGAAGCATCAGCCAAGGGGTGGGAATGGGAAAGCTCCCAGTGCTTCCTCGAAGATGTTGATGCGTCAGAAGAAAGAATTGATGATTACGAGAAATTCTTTCTGTTCTTGAAAGCTACAATATGTTCTGCTGATGACATGGGAAAAAGGTGCCATCAAATTTACCAAGCGAGAAGCATGGCCATGGACTTGTTAGGAAGGTGA 3480 43.39 MSYSHNSSFHSIENGKARQSYGHCLCTNANAFVCVRRSNNSLCSANFMGKQKQQVISRFFAPKPKSPSLSSSSSAAALTSPTQPFSPPKISATVTFSPSKRLISSALASQSTPPKSSKRPKLSPHTQNPLPSVPNASLHKRFLHKFLEPTDDSFEPSNQNPRISTVADVKYTPLELQVVDLKKRYPDVLLMVEVGYRYRFFGQDAEIAARVLGIYAHLDHNFMTASIPTFRLNVHVRRLVSAGYKVGVVKQTETAAIKAHGSNKLGPFCRGLSALYTKSTLEAAQNFGGAEEGCGGESNYLFCVVENSMLVDNLDFRIENGVDVKIGMVAMEISTGDVIYREYDDNFMRSGLEAMLLSLSPAELLLGDPISKPTEKLLLGYAGPASNVRVEHVSRDCFKDGSALAEVMSLYENIDKDNLAEHNNPETVLVGQKSDRTAIKEIVNMPNLALQALALTIRHLKQFGLERIVSLGSSFRPFSCKMEMTLSGNTLTQLEVLKNNDDGSQTGSLLQCMNHTLTIFGSRLLRQWITHPLCDRDMIIARQEAVSEIAASMVSSKVSQNNRVLDEEDSDVMVIEPELNYILSSVLTTLGRAPDIQRGITRIFHRTAAPSEFIAVIQAILFAGKQLQQFHIHEEDDNYSSESMIGSKLLRKLILSASSSSLINIAAKLLSMISKEAADQGDFPNLMIIYGDQFPKVARARKEAQSAREKLDSLITLYRKHLGMRKLEFTSVSGTTHLIELALDVKVPSNWVKVNSTKKTVRYHPPEILAALDELSLANEELMVASRDAWDGFLSGFSRYYAEFQAAVQALASIDCLYSLAILSRNKNYARPEFVHDDEPAQILICSGRHPVLEGTLQGNFVPNDTNLDVNGEHCQIVTGPNMGGKSCYIRQVALIALMAQVGSFVPALSAKLHVLDGIYTRMGASDSIQQGRSTFLEEMTETSHILHHSTSRSLVIIDELGRGTSTHDGVAIAYAALHNLLQQKKCLVLFVTHYPKVAEIAKEFPASAGVYHVSYLTSHKNPSLSGPKSTEEDVTYLYKLVPGVAESSFGFKVAQLAQIPLSCIARATEMGVWLEEIVTRRAQRKSTEQHSQEASAKGWEWESSQCFLEDVDASEERIDDYEKFFLFLKATICSADDMGKRCHQIYQARSMAMDLLGR 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9093503 9101190 - CrPI670011_05g009870.1 Cre05g0987 497500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g0987 1159 FunFam DNA mismatch repair protein 162 292 - -
Cre05g0987 1159 SUPERFAMILY DNA repair protein MutS, domain III 489 827 IPR036187 -
Cre05g0987 1159 Pfam MutS domain I 172 282 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 Pfam MutS domain V 876 1071 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 175 1094 IPR045076 GO:0003690(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006298(InterPro)|GO:0006298(PANTHER)|GO:0006312(PANTHER)|GO:0030983(InterPro)|GO:0140664(InterPro)
Cre05g0987 1159 SUPERFAMILY DNA repair protein MutS, domain I 165 280 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 SUPERFAMILY DNA repair protein MutS, domain II 297 423 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 SMART mutATP5 873 1073 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 FunFam DNA mismatch repair protein Msh3 671 797 - -
Cre05g0987 1159 Pfam MutS domain III 489 821 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 FunFam DNA mismatch repair protein 295 481 - -
Cre05g0987 1159 Gene3D DNA repair protein MutS, domain I 163 289 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 MobiDBLite consensus disorder prediction 105 135 - -
Cre05g0987 1159 Gene3D - 671 797 - -
Cre05g0987 1159 Gene3D - 829 1112 IPR027417 -
Cre05g0987 1159 SMART DNAend 504 856 IPR007696 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 MobiDBLite consensus disorder prediction 105 134 - -
Cre05g0987 1159 FunFam DNA mismatch repair protein MSH3 829 1104 - -
Cre05g0987 1159 MobiDBLite consensus disorder prediction 70 91 - -
Cre05g0987 1159 Gene3D - 486 821 - -
Cre05g0987 1159 Pfam MutS family domain IV 699 778 IPR007861 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 Gene3D MutS, connector domain 295 483 IPR036678 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 ProSitePatterns DNA mismatch repair proteins mutS family signature. 954 970 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cre05g0987 1159 Coils Coil 697 717 - -
Cre05g0987 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 829 1072 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g0987 K08736 - - csv:101214720 1882.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0987 Cre-Chr5:9093503 Cre09g0494 Cre-Chr9:4680218 2.60E-81 dispersed
Cre10g0702 Cre-Chr10:6740484 Cre05g0987 Cre-Chr5:9093503 2.20E-34 transposed
Cre05g0987 Cre-Chr5:9093503 Cre09g2100 Cre-Chr9:40000337 3.50E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g655 . . . . . . . . Cmo16g00135 . . . . . Sed08g0333 . . Bhi01g01330 Tan01g0263 Cmetu06g0071 . Hepe07g0166 Mch10g0163 . Cla01g00411 Cam01g0429 Cec01g0420 Cco01g0442 Clacu01g0430 Cmu01g0412 Cre09g2100 Cone1ag1153 Cone5ag0862 . . Lsi05g01236 . . Cme06g00988 . Blo09g00106 . . . . . . . . . Cma16g00130 . Car16g00115 . . . . . . . . . . Cla05g00871 Cam05g0960 Cec05g0964 Cco05g0964 Clacu05g0946 Cmu05g0903 Cre05g0987 . Csa03g01702 Chy06g00938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007018 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 2 1 36