Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1004 ATGAGTCCGCCCGCTGTCGAACCTCCGTTACTTCTTCTTTTCCTGCTTGCTGCAGCGCTGCGGTGCCCTCTCGCCGGAGCGCGCCTTCTGGTGGAGATGACGGTGGTCCGAGACGCCTCTTCCATCGGAGCCTTTTGTTTGGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGAGCGGGAAACTGGCTTTTACAGTTCGAGGGTGGTGGGTGGTGCAATGATGTAAAGTCTTGTTTGGAGAGAGCGAATAGTCGAAGAGGATCAACGCGTTTGATGACCAAATGGGAAGACTTCTCTGGCATTCTTAGCAACAATGCTTCTCTTAATCCAGGCCCTCCTCCAAAATGCCGCTCTCTTTGCCGGCCACCCACTCGGCCTTCCCACCCACAAGACCATCTCCACCAAACCATGCTTCTGCTTCTTACGGCCCACTCTAACACCTCTTCTGCTGCAGTCTTACTTCCCAAATCCTCCATCCTTCCCGTTTCAAATTTTTATAACTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCATTTGCTGGAGATGCCTTGTTTGACAATGGGACATCGCTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCATTCTTGACCTTCTACCAAAAGGGTTGGGGACAGCAAGGAAGGCTCTGCTTTCTGGTTGCTCTGCTGGAGGTTTAGCAACTTTTCTTCATTGTGAAAATTTCACCAAGTATTTGCCAAGGAATGCTAGTGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGAGACATTGGTCTGAACCACACAATGAGGAACTTTTATAGGGATCTTGTGGCTCTTCAGGGGATGGAGCAAAATTTGAATGAAAACTGCACAGCCTCCTCTTACTTTCCAGAATTGTGCATATTCCCTCAGTATTCATTGAAGTACATAACAACACCATTTTTCATTCTGAATTCAGCATATGATGTTTACCAATTTCATCATGGGTTGGTGCCACCATCTACTGATTTACATGGACATTGGAACCATTGCAAATTTAATCCAGCAGAGTGTAGTGAACTACAGATTCAGGTATTGCAAGGTCTAAGAATGAGTATGCTTTCTGCATTAAGATTATTCTATGAATATTCAAGCAGAGGAGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAGTCACAAGACACATGGTTTGCTGACGACTCCCCAACAATAAACAACAAGACTATAGCAGAAGCAGTTGGAGATTGGTATTTTAGCAGGAGAAACACAAAGGAAATTGATTGTGCTTATCCATGTGACTCTACTTGCCATAATATTATACCATAA 1353 45.16 MSPPAVEPPLLLLFLLAAALRCPLAGARLLVEMTVVRDASSIGAFCLDGSLPAYHLDRGFGAGAGNWLLQFEGGGWCNDVKSCLERANSRRGSTRLMTKWEDFSGILSNNASLNPGPPPKCRSLCRPPTRPSHPQDHLHQTMLLLLTAHSNTSSAAVLLPKSSILPVSNFYNWNRVKLRYCDGASFAGDALFDNGTSLLYFKGQKIWESIILDLLPKGLGTARKALLSGCSAGGLATFLHCENFTKYLPRNASVKCLSDAGFFLDLRDIGLNHTMRNFYRDLVALQGMEQNLNENCTASSYFPELCIFPQYSLKYITTPFFILNSAYDVYQFHHGLVPPSTDLHGHWNHCKFNPAECSELQIQVLQGLRMSMLSALRLFYEYSSRGGMFINSCFAHCQSESQDTWFADDSPTINNKTIAEAVGDWYFSRRNTKEIDCAYPCDSTCHNIIP 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9217181 9233375 - CrPI670011_05g010040.1 Cre05g1004 497517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1004 450 PANTHER NOTUM-RELATED 169 447 IPR004963 GO:0009505(PANTHER)|GO:0016787(InterPro)|GO:0052793(PANTHER)|GO:0071555(PANTHER)
Cre05g1004 450 Pfam Pectinacetylesterase 169 430 IPR004963 GO:0016787(InterPro)
Cre05g1004 450 Pfam Pectinacetylesterase 28 115 IPR004963 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1004 Cre-Chr5:9217181 Cre07g1480 Cre-Chr7:30029550 3.30E-101 dispersed
Cre04g0913 Cre-Chr4:27808992 Cre05g1004 Cre-Chr5:9217181 7.50E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1004 K19882 - csv:101216160 732.25