Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1005 ATGTTTGACTTCGGAGTGGCTAAGAGGGAGGGTCCTGAGTTCGAAGAGCTTCAAAGTCCAAGGTCCCGTCGACCTCTTGTCTGGCTACTGAGGAAACCCGGGGATTGTCTCGAGAAATTAGTATTTGAAGCCTTACGACGGTTGCATGAATTTCTCTGGTCAAGCTTACATCAGAGAAAGAATGCAACTTTGGTTATTATGGAATCTTTATGGAAACTTCTATATTTGCTGGAACCTGCACCTGCCACTCTCATTGTGACTGCAGTGGCTGTTACATTTGGATCTGCTTTCCGGGCCCTAAATTATGGGAAGGAAATGGAGCGAAACCGTGACTTTTCAGAAGCATCCATTACCTTAGACAGATCCCAAGCGCTAATGATCCCAGTTATGAGTTCTTGCAGTTTGCTTTTGATGTTCTACCTGTTTTCTTCTGTGTCCCAACTTCTTACTGCATTCACAGCAGTTGCTTCTGTCTCATCCCTCTTCTTCTGTTTATCTCCTTACATGGCCTATTTAAAATCCCAGTTTGGATTGGCTGATCCTTATGTATCAAGATTCTTTGGGGCAAATGTAATGGTATCTGTAGCAACTCAGCAAGCATCAAATCCTGTTCACACAGTTGCTAATAGTCTGAGTCTTCCTGGGCTGCAATTGATAACTAAGAAGCTGGAGTTACCTGTCAAGATAGTTTTTCCAAGGAACTTACTTGGTGGAGTAATTCCAGGAAAAAATGCCACTGATTTCATGATGCTTGGTCTTGGTGATATGGCAATTCCTGCCATGTTTCTAGCTCTAGTTCTTTGTTTTGACCACCGGAAAAGTAGGGATACAGTCAATCTCTTGGATTTCCACACAAGGGGCCACAAGTACATTTGGTATGCCCTGCCCGGATATGCCATTGGACTGGTGACCGCTCTAGCAGCTGGCGTTTTGACTCGCTCCCCTCAACCTGCTCTATTGTATCTGGTGCCTTCTACATTAGGACCTGTTATTGCAATATCTTGGATAAGGAAGGATTTTTTGGAGTTATGGGAAGGTCCCTCGCCGAACCCCAATGATAAAGTAGTAGAAGTGACACCTCTTTGCGGGGTGTTCAATGAAAACCCTTTATCGTATTTGGTCTCGGTTGACGGTTTCAACTTCCTTATCGACTGTGGTTGGAACGACCACTTCGATCCTGCTCTTCTTCAACCTTTATCCAGGGTGGCATCCACGATTGATGCAGTTTTGATATCACATCCTGATACACTTCACCTCGGTGCTCTTCCTTATGCCATGAAACAACTTGGACTTTCTGCTCCAGTTTATTCCACTGAACCCGTTTACCGATTGGGTCTTCTTACAATGTATGATCAGTTTATCGCGAGGAAGCAAGTATCAGAGTTTGATCTATTTACGCTGGATGATATCGATTCTGCTTTCCAAGTTGTAACCAGACTAACATACTCCCAGAATCATCATCTTTCAGGCAAAGGAGAGGGAATAGTTATTGCCCCTCATGTGGCTGGGCATCTATTGGGTGGAACTCTATGGAAGATAACTAAGGATGGAGAAGATGTTATATATGCTGTTGACTTCAACCACCGCAAGGAAAGGCATCTGAATGGAACCATTCTAGAGTCATTTGTTCGACCTGCTGTATTGATCACTGATGCTTATAATGCTCTAAATAATCAGCCATACAGACGGCAAAAGGACAAAGAATTTGGAGATACTATTCAGAAGACCTTAAGAGCTAATGGAAATGTCTTACTTCCTGTTGATACTGCTGGGCGAGTGTTGGAGCTTATTCAAATTTTGGAATGGTACTGGGAAGAGGAAAGTTTAAACTATCCCATTTTCTTTTTAACTTACGTTGCATCCAGCACAATTGATTATATCAAGAGTTTCCTAGAGTGGATGAGTGATACAATAGCAAAGTCTTTTGAACACACACGGAGCAACGCTTTTCTTCTCAAGCATGTTACCCTTCTAATCAACAAAAGTGAACTTGATAATGCTCCAGATGGTCCAAAGGTTGTTTTAGCATCAATGGCGAGTTTGGAAGCTGGTTACTCACATGACATTTTTGTTGACTGGGCAATGGATGCCAAAAACCTCGTCCTTTTTTCTGAAAGAGGCCAGTTTGGCACTTTGGCCCGCATGCTTCAAGCAGATCCACCTCCCAAAGCTGTTAAGGTAACTGTGTCTAAGAGAGTCCCTTTGACTGGAGATGAGCTTATTGCTTATGAAGAAGAGCAAAACAGGAAAAAGGAAGAAGCTCTTAAGGCTAGTTTGCTTAAGAAGGAACAATCTAAAGCATCTCATGGAACTGAGAATGATACCAGCGATCCAATGATCATTGATGCTAGCAGTAATGTAGCACCAGATGTAGGGGGTTCACATGGAGGTGCATACAGAGACATACTAATTGATGGCTTTGTTCCTCCTTCAACCAGCATTGCTCCAATGTTTCCCTTTTATGAAAACACCTCCGTGTGGGATGATTTTGGTGAAGTAATCAATCCTGATGATTATGTAATTAAGGATGAAGATATGGACCAATCAGCGATGCATGCTGGTGGGGATGTGGATGGAAAACTAGATGAAACTGCTGCTAACTTGATTCTGGATATGAAGCCTTCGAAAGTTGTATCTAATGAATTGACAGTCCAAGTTAAATGCTCGTTGCGTTACATGGATTTTGAAGGTCGTTCAGATGGGAGATCAATTAAATCAATACTCTCCCACGTTGCTCCCTTGAAGCTTGTTTTGGTGCATGGAACCGCAGAGGCCACTGAGCATCTTAAGCAACATTGTCTTAAAAATGTCTGTCCCCATGTCTATGCCCCCCAAATTGAAGAAACGATTGATGTTACTTCTGATTTGTGTGCATATAAGGTACAACTTTCAGAGAAGCTGATGAGTAATGTGCTGTTTAAGAAGCTAGGAGATTACGAAATCGCTTGGCTTGATGCTGAAATAGGGAAGACCGAGAATGGAACATTGTCTTTACTTCCCCTCTCAAAGGCTGCTTCGCCTCATAAATCTGTTCTTGTTGGTGATTTGAAAATGGCCGACTTCAAACAATTTCTGGCCAGCAAGGGAATACAGGTTGAATTTGCTGGGGGTGCTTTGAGATGTGGCGAGTATGTCACCCTACGCAAGGTTACAGATGCAAGTCAAAAGGGTGGTGGTTCTGGTACACAGCAAGTTGTCATTGAAGGGCCCTTATGTGAGGATTATTATAAAATTCGGGAACTTTTGTATTCACAATTTTATTTGCTATATTCAACCTCAAATTTTCTTTTTTGCAATTTCAAGTTTGAATTATCCGCAAGAGGATCTTTCATGGCTTCCACTCCCCCCACGTGTTCACCCAGCTCTCTTCAGCTTCGTCTCGCTCTCAATTGCAAGAATTGCGGCAAATTCCCTTCAGTTCTTGTTCGGGCGGGAGTGAGGAAATTGGATCCTCGCCTCCGCGTAATTTGTCACCCTATTGTTCATAATGGCGCCAAAATCGAGAGAGGAAATGGACTTCGTCGTATTGGAGTTTGTTTTGCTGGATCGGAGTCGACGGCTGATGGATTCTCTGGGTGGTCGGAATCGGATTCCCAGGGAGAGGCTTTGGACTTGCGGAGAAAGAAGTGGTTTGGAGGATTGGTGGGGATTGGAATTACTGGATTCATCCTTTTCTCCGGAATCACCTTTGCAGCATGGTCAATAAACAAGCAGAATAGTTCCAGACAAAAACCGCTGATGGAGGCCTTAAGTACGCAGCAAGAATTATTGTTGGACTCTGATACTGTTAATGATAAGCTTGGTGAAGATGAAAAGGAAGATAACAGTTTGAAGGCAGATGATGAAACTCTCGCTGGTGAAACAGGTAACCAAGAGGACTCTTGTTCATGTACAGAAAATGAAGAAACTCTCAACAAAAATAGAGTTGGTGACAGTGTTGATGTTGAGGAGTTAGCAGAAAATGATGTTGAATCTTCATCCAGCAATAATGATGTCAATAATGTTGCTTCCTTGCAAGAAGATTTCCAATTTGATTCCTCACTAACTGTTACATCAGTTGCTGCCGGAAGTTTGAGTACACTTATCTCACCTGAATCTGAGTTTGATTCTAACGTAGCTTCTTGTTTTAAAGATGTAAACAACTGTCATTCTGGTGTAGAAGTCTTAACTTCTGAACCTGAAATGAATATATTGAAAGATGAACCAGACAACTTGCCTAACTCTAATACTAATTCATTAAACCTTAAAACTGATATTCGGGATGAAAGACCTGACACTGGTGAAAATTATGATTTCAGCTCTAATAAGTTACCAGTGTATGATGATAGTTCATCAAACTATAATTCTGGCAACCAGGATGAGACACTTGGTCCTGTAAATGAAATTACAGATTCTTCATTGGAAGGATTTTCTAGCATATCTGGCGACACAACCAAGGAATCAGGATTTTTTGACAGGGAGACTGTGGCTGAATCATCTGAAGGAGTTCTGAGCCCCAGCAAAACTGAACAGCTTTTATCTGAGGATACTGCATCAACCATAGACCAGCAAATAGAAAGAGGATTATCTGAAGCAGTATTAGTCTCTATCACAGATTATCCATCGGCAGATGATCAAGAGAAAAATCATGAAACTATCACGAATACTACTGCTGCCAAACCGGAACTACAAGAGATTTTATTTTCTTCTGCAGGTGTTCCTGCTCCTTTGGTTTCTGCAGCTGTTAAAACACTTCCCGGCAAGGTCCTAGTTCCTGCAGTAGTAGATCAGGTTCAGGGGCAGGCATTGGCAGCACTGCAAGTTTTAAAGGTGATAGAGGCTGAGGTTGAACCTAGTGATCTATGTACTCGTCGGGAATATGCTCGTTGGCTGGTGTCTGCAAGCAGTGCTCTTTCGAGGAACACAACATCCAAAGTATACCCAGCAATGTATATAGAGAATGTTACCGAGCTTGCTTTTGATGATATAACCCCCCAAGACCCTGATTTTGCATCTATTCAAGGTTTGGCAGAAGCTGGACTGATTTCAAGCAAGCTTTCGAGACATGATATTTGTTCTTCATTGGACGAAGACCAGGGTCCTTTATATTTCTCTCCCGAAAGCCCCCTATCACGTCAAGATCTTGTGAGTTGGAAGATGGCCCTTGAAAAAAGACAGCTTCCAGAGGCAGATAGAAAGATGCTCCACCAAGTTTCTGGATTTATTGATACTGATAAGATCCATCCAGATGCTTGTCCTGCACTTGTTGCTGATCTTTCTGTAGGAGAACAGGGAATAGTAGCTCTTGCATTTGGATATACAAGGCTTTTCCAGCCAGATAAGCCTGTAACAAAAGCACAAGCTGCCATTGCTCTTGCAACTGGGGAGGCTTCTGATATAGTAAGTGAGGAACTTGCAAGGATTGAAGCTGAATCAATGGCAGAAAATGCTGTTGCTGCGCATAGTGCTTTGGTAGCTCAAGTTGAGAAAGATATTAATGCTAGCTTTGAGAAAGAACTTTCCATTGAAAGAGAAAAGGTTGCGGCTGTGGAGAAAATGGCAGAAGAGGCAAAGCAAGAATTGGAAAGATTAAGATCCGAAAGAGAGAGAGATAGTATCACCTTGATGAGGGAACGCGCTTCTATTGAATCTGAAATGGAAGTTCTTTCAAGATTAAGGAATGAGTTGGAGGAGCAGTTGCAAGGCCTGCTGAGTAATAAAGTAGAGGTATCCTTTGAAAAGGAAAGAATCAACAAACTCAGGAAAGAAGCTGAAATTGAAAATCAGGAGATTTCCCGCCTGCAGTATGAGCTTGAAGTTGAGAGAAAGGCGTTGTCTATGGCCAGAGCTTGGGCCGAGGACGAAGCAAAAAGAGCAAGAGAACAAGCAAAAGCACTCGAAGAGGCTAGGGATCGCTGGGAAAAGCATGGCATCAGAGTAGTTGTCGACAGCGATCTCCGTGAACAAGAATCTGCTGGCGATACCTGGCTTGATTCTAGCAAACAGTTTGCAGTCGAAGAAACCACAGACAGGGCTGAGAACTTAATGGAGAAGCTGAAAAGAATGGCTACAGAAGTAAGAGGGAAATCGAGAGACGTAATCGAGAAGATCATCGAGAAGATAGCTTTACTAGTATCAAACTTGAGACAATGGATTTCAAAAACTGGAGAACAGGCTGAAGATCTAAAGAATGTGGCGATTTCAAAGGCAAGTAGATCAGCAACAGAATTTCAACAGAGCACTGCAGAGTTGAGCTTGGCCCTGAAGGAGGGAGCAAAGCGTGTTGTGGGAGATTGTAGGGAAGGAGTAGAGAAAATTACCCAAAAATTTAGAACATCTTATGGTTAA 6327 42.56 MFDFGVAKREGPEFEELQSPRSRRPLVWLLRKPGDCLEKLVFEALRRLHEFLWSSLHQRKNATLVIMESLWKLLYLLEPAPATLIVTAVAVTFGSAFRALNYGKEMERNRDFSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLFFCLSPYMAYLKSQFGLADPYVSRFFGANVMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIVFPRNLLGGVIPGKNATDFMMLGLGDMAIPAMFLALVLCFDHRKSRDTVNLLDFHTRGHKYIWYALPGYAIGLVTALAAGVLTRSPQPALLYLVPSTLGPVIAISWIRKDFLELWEGPSPNPNDKVVEVTPLCGVFNENPLSYLVSVDGFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLISHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDIDSAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKERHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAGRVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRSNAFLLKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGTLARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNRKKEEALKASLLKKEQSKASHGTENDTSDPMIIDASSNVAPDVGGSHGGAYRDILIDGFVPPSTSIAPMFPFYENTSVWDDFGEVINPDDYVIKDEDMDQSAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLRYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWLDAEIGKTENGTLSLLPLSKAASPHKSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLLYSTSNFLFCNFKFELSARGSFMASTPPTCSPSSLQLRLALNCKNCGKFPSVLVRAGVRKLDPRLRVICHPIVHNGAKIERGNGLRRIGVCFAGSESTADGFSGWSESDSQGEALDLRRKKWFGGLVGIGITGFILFSGITFAAWSINKQNSSRQKPLMEALSTQQELLLDSDTVNDKLGEDEKEDNSLKADDETLAGETGNQEDSCSCTENEETLNKNRVGDSVDVEELAENDVESSSSNNDVNNVASLQEDFQFDSSLTVTSVAAGSLSTLISPESEFDSNVASCFKDVNNCHSGVEVLTSEPEMNILKDEPDNLPNSNTNSLNLKTDIRDERPDTGENYDFSSNKLPVYDDSSSNYNSGNQDETLGPVNEITDSSLEGFSSISGDTTKESGFFDRETVAESSEGVLSPSKTEQLLSEDTASTIDQQIERGLSEAVLVSITDYPSADDQEKNHETITNTTAAKPELQEILFSSAGVPAPLVSAAVKTLPGKVLVPAVVDQVQGQALAALQVLKVIEAEVEPSDLCTRREYARWLVSASSALSRNTTSKVYPAMYIENVTELAFDDITPQDPDFASIQGLAEAGLISSKLSRHDICSSLDEDQGPLYFSPESPLSRQDLVSWKMALEKRQLPEADRKMLHQVSGFIDTDKIHPDACPALVADLSVGEQGIVALAFGYTRLFQPDKPVTKAQAAIALATGEASDIVSEELARIEAESMAENAVAAHSALVAQVEKDINASFEKELSIEREKVAAVEKMAEEAKQELERLRSERERDSITLMRERASIESEMEVLSRLRNELEEQLQGLLSNKVEVSFEKERINKLRKEAEIENQEISRLQYELEVERKALSMARAWAEDEAKRAREQAKALEEARDRWEKHGIRVVVDSDLREQESAGDTWLDSSKQFAVEETTDRAENLMEKLKRMATEVRGKSRDVIEKIIEKIALLVSNLRQWISKTGEQAEDLKNVAISKASRSATEFQQSTAELSLALKEGAKRVVGDCREGVEKITQKFRTSYG 2108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9241898 9262894 + CrPI670011_05g010050.1 Cre05g1005 497518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1005 2108 MobiDBLite consensus disorder prediction 1493 1508 - -
Cre05g1005 2108 Gene3D - 360 607 IPR036866 -
Cre05g1005 2108 MobiDBLite consensus disorder prediction 1266 1312 - -
Cre05g1005 2108 MobiDBLite consensus disorder prediction 1288 1303 - -
Cre05g1005 2108 SMART Lactamase_B_5a 368 573 IPR001279 -
Cre05g1005 2108 Pfam Cleavage and polyadenylation factor 2 C-terminal 993 1086 IPR025069 -
Cre05g1005 2108 Coils Coil 1872 1899 - -
Cre05g1005 2108 Coils Coil 1998 2025 - -
Cre05g1005 2108 MobiDBLite consensus disorder prediction 1430 1479 - -
Cre05g1005 2108 SMART psh_8 115 337 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Cre05g1005 2108 MobiDBLite consensus disorder prediction 1489 1508 - -
Cre05g1005 2108 MobiDBLite consensus disorder prediction 1397 1482 - -
Cre05g1005 2108 Pfam Metallo-beta-lactamase superfamily domain 373 548 IPR001279 -
Cre05g1005 2108 MobiDBLite consensus disorder prediction 759 779 - -
Cre05g1005 2108 Pfam Beta-Casp domain 593 716 IPR022712 -
Cre05g1005 2108 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1111 2105 - -
Cre05g1005 2108 Coils Coil 1942 1969 - -
Cre05g1005 2108 SUPERFAMILY Metallo-hydrolase/oxidoreductase 356 952 IPR036866 -
Cre05g1005 2108 CDD CPSF2-like_MBL-fold 359 554 IPR035639 -
Cre05g1005 2108 Coils Coil 1903 1930 - -
Cre05g1005 2108 Coils Coil 743 763 - -
Cre05g1005 2108 SMART Beta_Casp_2 593 716 IPR022712 -
Cre05g1005 2108 Pfam Signal peptide peptidase 186 348 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Cre05g1005 2108 Pfam Signal peptide peptidase 115 173 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Cre05g1005 2108 MobiDBLite consensus disorder prediction 1266 1281 - -
Cre05g1005 2108 FunFam Cleavage and polyadenylation specificity factor subunit 2 357 606 - -
Cre05g1005 2108 Coils Coil 1833 1867 - -
Cre05g1005 2108 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 884 935 IPR011108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1005 K14402 - - csv:101215673 1420.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1005 Cre-Chr5:9241898 Cre05g2483 Cre-Chr5:36209600 3.50E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30