Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1007 ATGCCTTCATGGTGGGGGAAGTCGTCATCCAAAGAAGTGAAGAAGAAAACAAGCAAGGAAAGTTTCATCGACTCATTACACCGAAAGTTTAAGAATTCACCTGAAGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAATGTGATGGTGACACTATATCTGAGAAAGGGTCCAAATCACCAATATCAAGATCGCCATCACCTTCCAAAGAAGTTGCTAGATGTCAAAGTTTTGCAGAAAGATCGTGTTCTCACAAACTTCCACTTCCAGATTTGCACCCTGTAGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGACAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCTTTATTCCTACCCCTCCCTAGACCTGCTTGTATTCGAAGTAGGCCAGATCCTGCAGATTTGGATGGAGATTTGGTCACTGGTTCAGTCTTTGGTGAGTCCTCAAGTGATAGCGATGATCCCAGTGATTCACGTCAACGTAGTCCTCAGGCAACTGACTATGACATTGGGGCTAGAACTGTGATAGGTTCTACTGAAGCTAGTGAAACTCTCAAGGATCAGTCTCCTACTGTCGTGCAAATAAATCTAAGAGAGGGCAAGAAATCGGAAAGCCTTCCATTTCCTCACAAGAATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCCATGAGGATATTTAGCACTGAGCAAGTCATGAACACTGCTGTTTGGGCTGGAAAATCTCACCCAGATGTCATTTTAGCTGGATCTGGCCCTTGTTCCAGTCCTGGCTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATATGGCAGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCTGAATATTCTCCTGTACCTAGTTCTAGAATGACTAGCCCCGGTCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCGAGAGCAGGAGCTCCACCTGCTGAGTCACAATCATGCTGGCCTGATGAGAAACAAACTCATCGTTTGCCTCTTCCTCCCATAGCAATCTCAAACTCCTCTCCATTTTCGCATTCGAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGGGGCACATTTGGGCACGTATATGTTGGTTTTAATAGTGAAAGTGGAGAGATGTGTGCAATGAAGGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGAAATTGCTTTACTGAGTCGTTTGAGGCATCCCAACATTGTGCAGTATTATGGTTCGGAAGCAGTGGGTGATAAATTCTATATATATCTGGAATATGTATCTGGTGGTTCCATTTATAAATTACTTCAAGAGTATGGGCAATTTGGGGAACTAGCAATTCGTAACTATACTCAACAAATACTATCAGGACTTGCGTATTTGCATGCTAAAGCTACGGTGCACAGGGATATCAAAGGAGCAAACATACTTGTTGACCCAAATGGTAAAGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACCGGCCAATCATGTCCACTATCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGTTGCAACCTTGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCCTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAGAGAACTCCCAGTAATTCCAGAGAACCTCTCAGATGATGGGAAGGATTTTGTGAAACTATGTCTGCAACGAAACCCACATCATCGGCCTACAGCTGCTCAACTCTTGGAGCATCCTTTTGTCAAAAACGCTGCACCTATAGAGAGGCCTATTTTGAGCTCTGAGCCTTCGGATACAACTCCAGGAGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTCTATGGACTCGGATAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGCTCTTCATGCCAGTGAAATCAATATTCCCAGAAACATATCATGTCCTGTTTCACCAATCGGAAGCCCTCTTTTGCATTCACGATCCCCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATTTCAAGTCCTCGAACCACTTCGGGCTCGTCCACACCTTTGACAGCATGTGGTGGTGCAATTCCTTACAACCACCTGAAACAAGCTATATTCTTGCAAGATGGATTCGGAAGCATGCCAAAGTCCATAAATAGTAGTCCATACAGCAGCGGTATCTCATTCCATGACTCAAATCCCGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATCTTCTCTGAAATGATACCAGAAAACGATATCTTGGGAAAGCAGGTTGGACGGCCTGCTTATGGTGAGTTGTATGATGGCCAGCAGGTCCTGGCTGACCGAGTATCTCGAAAGCTCTTACGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTAGCGCTACATTGTCTGGCCGCATGAATGGGATCTGA 2694 45.17 MPSWWGKSSSKEVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSRKCDGDTISEKGSKSPISRSPSPSKEVARCQSFAERSCSHKLPLPDLHPVGVGRTDSGISVTAKSKLERSSKTSLFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPSDSRQRSPQATDYDIGARTVIGSTEASETLKDQSPTVVQINLREGKKSESLPFPHKNSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNTAVWAGKSHPDVILAGSGPCSSPGSGHNSGHNSMGGDMAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQSCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQEIALLSRLRHPNIVQYYGSEAVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRNYTQQILSGLAYLHAKATVHRDIKGANILVDPNGKVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSRELPVIPENLSDDGKDFVKLCLQRNPHHRPTAAQLLEHPFVKNAAPIERPILSSEPSDTTPGVTNGVKILGIGQSRTTSMDSDSRLAVHSSRVSKAALHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTACGGAIPYNHLKQAIFLQDGFGSMPKSINSSPYSSGISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRKLLRDHVKTNPSLDLSPSATLSGRMNGI 897
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9296725 9302399 - CrPI670011_05g010070.1 Cre05g1007 497520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1007 897 Gene3D Transferase(Phosphotransferase) domain 1 408 685 - -
Cre05g1007 897 MobiDBLite consensus disorder prediction 371 403 - -
Cre05g1007 897 MobiDBLite consensus disorder prediction 285 412 - -
Cre05g1007 897 FunFam Mitogen-activated protein kinase kinase kinase 408 691 - -
Cre05g1007 897 MobiDBLite consensus disorder prediction 313 340 - -
Cre05g1007 897 MobiDBLite consensus disorder prediction 103 117 - -
Cre05g1007 897 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 43 671 IPR050538 -
Cre05g1007 897 MobiDBLite consensus disorder prediction 9 35 - -
Cre05g1007 897 MobiDBLite consensus disorder prediction 204 225 - -
Cre05g1007 897 CDD STKc_MEKK1_plant 409 666 - -
Cre05g1007 897 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524(InterPro)
Cre05g1007 897 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1007 897 MobiDBLite consensus disorder prediction 745 776 - -
Cre05g1007 897 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1007 897 MobiDBLite consensus disorder prediction 56 72 - -
Cre05g1007 897 MobiDBLite consensus disorder prediction 741 776 - -
Cre05g1007 897 SMART serkin_6 410 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1007 897 MobiDBLite consensus disorder prediction 1 175 - -
Cre05g1007 897 SUPERFAMILY Protein kinase-like (PK-like) 408 755 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1172 Cre-Chr4:30282237 Cre05g1007 Cre-Chr5:9296725 5.80E-117 dispersed
Cre05g1007 Cre-Chr5:9296725 Cre08g1501 Cre-Chr8:27766371 5.80E-89 dispersed
Cre03g1217 Cre-Chr3:13383490 Cre05g1007 Cre-Chr5:9296725 4.70E-65 transposed
Cre11g2191 Cre-Chr11:33593124 Cre05g1007 Cre-Chr5:9296725 2.20E-52 transposed
Cre05g1007 Cre-Chr5:9296725 Cre09g2066 Cre-Chr9:39714244 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64136 PF00069 Pkinase 1.00E-71 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1007 K20717 - csv:101214961 1580.07