Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1025 ATGGCGGCTGGATCCTTGAGGAGGAGGCAGTCTAAGCGATCGACCTCCAAGCCCTCTGTAGCCATGACTTCTCGGCCTTCTTATCAACGTTTCCTTACCCCTAGAAATACCGCCCTGCTAGTTTCGATTTCTTTGATTTTCTTTGTTGTTCTGGTCTCCGGCATTTCTTTGAATGTATTGCGTAGATCGCCCAAATATGAAGTTCAATCGCCAATTGTTTACTCTATTGAGGTGGTCAACGAATTTCCTCACGATCCTACAGCCTTTATTCAGGGACTGGCTTATGTAGAAAATGACACCCTATTTGAGTCAACTGGTCTGTATGGACAGTCATCAGTTCGAAAAGTAGCTCTCTCTACTGGGAAGGCTGAGGTTTTTCACAAGATGGATGACTCTTACTTTGGGGAAGGCTTAACACTTCTTGGGGAAAGGCTGTTCCAAGTAACTTGGTTGAAGAAAACTGGTTTCATATATGACCGAGACAATTTAAGCAAAGTTAAGGAATTCACTCATCAAATGACTGATGGTTGGGGATTGGCAACAGACGGAAAAGTTTTGTATGGAAGTGATGGAACATCAACATTATACCAAATTGATCCAGAGACATTTATAGTTACTAATAAATGGGTTGTGAGATATCAAGGAGATGAGGTGCATAACCTCAATGAGCTGGAATTTATCAATGGAGAAGTCTGGGCAAATGTTTGGATGACTGATTGCATCGTCAGAATCTCAATACGTGATGGAAGTGTGCTTGGATGGGTTCTCCTCCCGTCTTTGAGACGGAAATTGTTGGGAGAAGGGAAACAAATTGATGTTTTAAATGGCATTGCATGGGATAGCGGCAAGAATCGCCTTTTTGGTAAGAAACCTAGATTATTTGAGTTTGCCGCTACTCAAGCTAGTCAGTTATTGGTGACCAAAAGATTCGAACTCCGCGAAGAGATCGGAATTGTGAAGATCTTAACTTCCTTCCCTAATCCTTCTGCTTCAAAAACTCCATTGCCTTCTTCCTTCAAAGCTTCCAGACTCCATACTTCCATCTCTCTCATTCTCTTAAACACCATGACATTCAACTCATCTTCCATTCCGTTATGGCTGTCCAGCCGAACCGCATTCGGAGTGAAACGATGGGTTCTGATTGTTACTTCTGTTCTCGTTTTTCTTTTTTTCGTTGTCATTCTTGCCTTCATTTTTCACATCTATTGTCGTCGGCGGAGGCGGATTCGGAACCGTCGAAACGATGATCGTGAAGCTGTTCTCCCGGTGACGGAGATGAAGGTAAAGAAGGGTTCCGATCATCAATTTTCACGGCAGGGTAGTCTGACTACTCAGCATAGTATTGTCACAGATTGGGAGTATTCGACCGGCCGATACTCCCCGGCGGCGTTTAAGGATCGGCGGATAAGGAGTACATTTGCGCTGGAAGAGATTGCTTTGGCGACCGATGGATTCAGCGAAGAGAATGTCATTAGCATCGAAGATTTCGGTGTCGATTACTGTGGAAAGTTGGCGGATGATACACAAGTGATTGTTAAGATATTCAATGCAGATAACAGTTTTGGAGACAACGAGCTCATCAGAGAAGCAGAGAGAATTCGGCATATTAGCCATAAAAATTTGATCAAGTTGCTTGGACACTGCACCCAGGGAATTGCTAATAATAGGATGTTTGTTTATGAAAATGTGGATAATGGGAATTTGCATCAGTGGCTTCATGGATGTCCACAGAATCCTTTTAGCCATCTGACATGGTCCATTAGGATGAACATTATTCAAGGAATTGCAAAAGGATTAGCATATCTTCATGAAGATGTGGAACCACAAATTCTTCATGGCAGGCTTAGATCCAGCTGCATATTACTTGATCAGCATTGGAATCCCAAGATTGCCAATTTCGGTCTAGTTGAGCTTTTGCCTTTGGAGTACTCGCCTGGACCTTTGGGTGGAGAAATGTATGAATCCCTTGAGAATGGATCAACTAGTCCATTCACAGAGAAGAATGATGTTTATAGCTTTGGTATACTTCTCATGGAGATGATAACAGGAAGAGCTCCTGTGGACTGCAATCAATCCCAAACAGATTTGACAGAGTGGGTGAAATCAATGATTGGGAATCAACATGCATTTGAAATAGTTGATTCCAAATTGGAAGAAAAACCATCCTCAAAGCAACTTAAACGGATGCTTTTAATTGCCCTTCGCTGTGTTGATCCAGACATTCAGCACAGGCCCACTATGGGCCAAATCCTTCTCATGCTTCAGCCTCACGACCTTTTACTCACTGATGGCTGTCAAATCGGAATGAGTGAGTTCTTTTGA 2322 42.85 MAAGSLRRRQSKRSTSKPSVAMTSRPSYQRFLTPRNTALLVSISLIFFVVLVSGISLNVLRRSPKYEVQSPIVYSIEVVNEFPHDPTAFIQGLAYVENDTLFESTGLYGQSSVRKVALSTGKAEVFHKMDDSYFGEGLTLLGERLFQVTWLKKTGFIYDRDNLSKVKEFTHQMTDGWGLATDGKVLYGSDGTSTLYQIDPETFIVTNKWVVRYQGDEVHNLNELEFINGEVWANVWMTDCIVRISIRDGSVLGWVLLPSLRRKLLGEGKQIDVLNGIAWDSGKNRLFGKKPRLFEFAATQASQLLVTKRFELREEIGIVKILTSFPNPSASKTPLPSSFKASRLHTSISLILLNTMTFNSSSIPLWLSSRTAFGVKRWVLIVTSVLVFLFFVVILAFIFHIYCRRRRRIRNRRNDDREAVLPVTEMKVKKGSDHQFSRQGSLTTQHSIVTDWEYSTGRYSPAAFKDRRIRSTFALEEIALATDGFSEENVISIEDFGVDYCGKLADDTQVIVKIFNADNSFGDNELIREAERIRHISHKNLIKLLGHCTQGIANNRMFVYENVDNGNLHQWLHGCPQNPFSHLTWSIRMNIIQGIAKGLAYLHEDVEPQILHGRLRSSCILLDQHWNPKIANFGLVELLPLEYSPGPLGGEMYESLENGSTSPFTEKNDVYSFGILLMEMITGRAPVDCNQSQTDLTEWVKSMIGNQHAFEIVDSKLEEKPSSKQLKRMLLIALRCVDPDIQHRPTMGQILLMLQPHDLLLTDGCQIGMSEFF 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9502154 9512368 - CrPI670011_05g010250.1 Cre05g1025 497538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1025 773 SUPERFAMILY Protein kinase-like (PK-like) 470 754 IPR011009 -
Cre05g1025 773 Pfam Protein tyrosine and serine/threonine kinase 502 751 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1025 773 Pfam Glutamine cyclotransferase 64 289 IPR007788 GO:0016603(InterPro)|GO:0017186(InterPro)
Cre05g1025 773 ProSiteProfiles Protein kinase domain profile. 485 760 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1025 773 PANTHER OS01G0323000 PROTEIN 366 762 IPR052232 -
Cre05g1025 773 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 75 287 IPR011044 -
Cre05g1025 773 Gene3D Transferase(Phosphotransferase) domain 1 563 760 - -
Cre05g1025 773 Gene3D Phosphorylase Kinase; domain 1 452 561 - -
Cre05g1025 773 FunFam Putative receptor-like serine/threonine-protein kinase 563 766 - -
Cre05g1025 773 MobiDBLite consensus disorder prediction 1 22 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1025 K22757 - - csv:101210355 649.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1025 Cre-Chr5:9502154 Cre08g1550 Cre-Chr8:28157548 6.50E-73 dispersed
Cre05g0215 Cre-Chr5:2097555 Cre05g1025 Cre-Chr5:9502154 1.30E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g761 . . . . Bpe03g00154 . Bma10g01253 Bma14g02043 Cmo16g00106 Cmo18g01300 . . . . . . Cpe14g00084 . . . . . . . . . . . . . . . Cone5ag0891 Cone14ag0056 . Lsi05g01194 . . Cme06g01030 . Blo09g00064 . . . . . . . . . Cma16g00099 . Car16g00089 Car18g01180 Cpe09g00067 . . . . . . . . Cla05g00914 Cam05g1000 Cec05g1003 Cco05g0998 Clacu05g0988 Cmu05g0944 Cre05g1025 . Csa03g01747 Chy06g00976 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013667 0 0 0 0 0 1 2 0 1 1 1 1 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64138 PF07714 PK_Tyr_Ser-Thr 1.10E-29 CL0016 Cre PK