Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1031 ATGGGCAGTCACATTTCCTTCGAACAATTGGAATCAGAATCCTTTTCATTTTATAACATGGAAGAGGAAGCCATCAGCGTCACAGCTTTGGAGGAACTGCTGCAGGAAATTATAGTTGAGGAAACATATCACTATATTGATCTCCATTCTAAGTGTATCGGTCAGGTGGCCCTCTCAGTTTCTGTTCTATTTGATCACTTCATTGTGTTCTTAGCCAGTTCTATTAGTAGCTACAATTCTCTTGCCTGTTTACCTCAAATCTCTTTTGTTTCAGGCCATTTGAAGCAAAAGTTTTCAACTCCCAAGAGCTTTGTATTAACAAATAAAGAGATGGCTGCAAATGATGTTCCATGCTGTGAGCCAAGGTTCTGGATGTATCTTTTGATATGTGTAGGTTTGGTTGCTTTTGCTGGTCTTATGTCGGGCCTTACGCTAGGACTTATGTCCCTCAGCTTGGTTGATCTCGAGGTTCTTGCAAAATCTGGCAGGCCTGACGACCGCAAAAATGCCGCTAAAATTCTGCCTATAGTAAAGAACCAGCATTTGCTTCTTTGCACACTCCTCATAAGCAATGCTATGGCAATGGAGGCTCTGCCTATCTTCATTGATGCACTTCTCCCAGCTTGGGGTGCAATTGTGATATCAGTGACTCTCATACTAACTTTTGGAGAGATTATTCCTCAAGCTATATGTTCAAGGTATGGACTGAGTGTCGGCGCAAAGCTATCCGTCGTTGTTCGGGTGCTTCTCTTAGTCCTCTTTCCTTTGTCTTACCCCATCAGTAAGTTATTAGATTTGCTTCTAGGCAAGGAGCATTCTGCACTTCTAAGAAGGGCAGAGCTCAAGACATTTGTGGATATGCATGGGAACAAGGCAGGCAAAGGTGGAGAATTGACTCAAGAAGAAACTACCATAATCACTGGAGCTTTGGACATGACTCTCAAAACTGCCAAAGATGCTATGACTCCTTTATCCAAATTGTTTTCACTTGATATAAATTCCAAACTTGATGAGAAAACCATGGAGCTGATTTTAAGAAAAGGACATAGTCGAGTGCCGATATACTCGGGACATCCAACTAATATCGTTGGTATTATTTTGGTTAAAAATCTGATCAAATTTCATCCACAGGATGAAACTCCCATCAGAAATCTCAGCATCAGAAAAGTTCCAAGGGTACATGAGAACTTACCTTTGTATGACATTTTGAACCAGTTCCAGCAAGGACATAGTCATATGGCTGTTGTCATAAAGAATCATAAGGAAGCCAGAGAGCCTGCAGATTCAACAACTGCAGATTCTAACAAATCAGAACTCGAAACCGCGACACCGGTAACTGAGACGGAGTTAGGACATATTAAGCTGCAGATAAGGAATATTTACTCTAATGGTAGTAGCGATACTGATGGAAAATCAATGCCAGATTTTGATGAAGATGTTATTGGTATCATAACACTAGAGGATGTCATGGAAGAACTTTTACAGGAAGAGATATTGGATGAGACTGATGAATATGTTGCTGTTCACCACAAGCTGAAAGTGAATATGAAAGTAAGGAGATCAACATCAGAATCACCAGGAGCAGCCCATCTACAGTGGATATCGCCAGTGGCATCCCCACTATCTTCATACCATCATTCTCCACTTTCTTCTTCATACAATCACTCACCAATTCTTCATTCTCCAATTCCTCCAAATATTCACTCCCCATTTACTCCACTACCTCTCTCTTCTTCGCCTGCAAATTACTTGCACTCTTCTCCAACTCCATGTTCTGTTCCTTCTCTTTGTGCTTCACCTTCTTCTCATAAGATTTCAAGGAAATCATATGAGAAGCTGAAGCAGCCAGATGGATCATAG 1860 41.13 MGSHISFEQLESESFSFYNMEEEAISVTALEELLQEIIVEETYHYIDLHSKCIGQVALSVSVLFDHFIVFLASSISSYNSLACLPQISFVSGHLKQKFSTPKSFVLTNKEMAANDVPCCEPRFWMYLLICVGLVAFAGLMSGLTLGLMSLSLVDLEVLAKSGRPDDRKNAAKILPIVKNQHLLLCTLLISNAMAMEALPIFIDALLPAWGAIVISVTLILTFGEIIPQAICSRYGLSVGAKLSVVVRVLLLVLFPLSYPISKLLDLLLGKEHSALLRRAELKTFVDMHGNKAGKGGELTQEETTIITGALDMTLKTAKDAMTPLSKLFSLDINSKLDEKTMELILRKGHSRVPIYSGHPTNIVGIILVKNLIKFHPQDETPIRNLSIRKVPRVHENLPLYDILNQFQQGHSHMAVVIKNHKEAREPADSTTADSNKSELETATPVTETELGHIKLQIRNIYSNGSSDTDGKSMPDFDEDVIGIITLEDVMEELLQEEILDETDEYVAVHHKLKVNMKVRRSTSESPGAAHLQWISPVASPLSSYHHSPLSSSYNHSPILHSPIPPNIHSPFTPLPLSSSPANYLHSSPTPCSVPSLCASPSSHKISRKSYEKLKQPDGS 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9535790 9546720 - CrPI670011_05g010310.1 Cre05g1031 497544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1031 619 CDD CBS_pair_CorC_HlyC_assoc 316 417 IPR044751 -
Cre05g1031 619 Gene3D - 302 434 IPR046342 -
Cre05g1031 619 ProSiteProfiles CBS domain profile. 321 382 IPR000644 -
Cre05g1031 619 PANTHER METAL TRANSPORTER CNNM 117 529 IPR045095 GO:0005737(PANTHER)|GO:0010960(InterPro)|GO:0030026(PANTHER)
Cre05g1031 619 MobiDBLite consensus disorder prediction 595 619 - -
Cre05g1031 619 Gene3D - 452 501 IPR046342 -
Cre05g1031 619 Pfam Cyclin M transmembrane N-terminal domain 128 299 IPR002550 -
Cre05g1031 619 MobiDBLite consensus disorder prediction 422 444 - -
Cre05g1031 619 FunFam DUF21 domain-containing protein 300 436 - -
Cre05g1031 619 MobiDBLite consensus disorder prediction 605 619 - -
Cre05g1031 619 ProSiteProfiles CNNM transmembrane domain profile. 119 302 IPR002550 -
Cre05g1031 619 SUPERFAMILY CBS-domain pair 306 495 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1031 K16302 - - csv:101210102 829.706
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1405 Cre-Chr4:32841629 Cre05g1031 Cre-Chr5:9535790 1.40E-115 dispersed
Cre05g1031 Cre-Chr5:9535790 Cre06g1333 Cre-Chr6:7330738 2.10E-106 dispersed
Cre05g1031 Cre-Chr5:9535790 Cre05g2075 Cre-Chr5:32680713 8.50E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37