Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1049 ATGACGCCTTATAACTCCAAAACTCCATTCATATTTAACGTCACTTCTTCCTCTTCTTCCTCCCTTCACTCGATACGACTCTGCACTTCCTCTCAAAGCTTTAACCTTTTACACCATTTTCCCCATTTGGGTCTACCAAAAAGGTCCAACTTTTCGCTTGTGATAAGGGTTGTATGGAAGCTTGAAGCGAAGGGTCTGAATTGTCATATCTCTTTGAGAGACAAGAAAGAGGAGGGGAATGGAGGCCATATGGAGTGTGTTCTGTGGAGTCAAGCTCTGACCATCTGTTTTGATTTTCTACTGTTCATCTTGCTTGTATCCAATATTGTGGGGAAGTCAATGAAAAGAGTTCACATGTCGAATCGAATTCGTAACGGTTCAGGTTTGCTGATTTTTTCTGCTATCTTCAATGGCTGTGTTGGATTGGTGTACCTTGGCTTAGGCATTTGGACTTTGGTGGAGAAGTTGAGGAAAGATCACACTGCTTTGCCTTTGCAGCTGTGGTTATCAGCTTCCTTCCATGGCTTCACATGGTTGTTGGTGAGTTCTATTGTCAGCATATGGAGTAAACAGCTTCCAAGAGCCTTGTTGCGCCTATTGTCCATTGCGGCATTTGTGTTTGCTGGGGTTGTTTGTGTTCTTTCACTTTTTGATGCCGTTTCGAGTAAAATAGTATCAGCAAAGATGGTTTTGGATGTTCTATCTGTTCTGGGATCAGTTTTATTATTGCTTTGCTCTTTTGGTTGTTTTAGCTGCCAAGAGAGTGAGGAGAGTATCAACGGGAATGGACTTTACACCCCATTAATTGATGAGGCCAATGAAAGTGGTAAGCTTGATCCTGTAACTCCATTAGCCAAAGCTGGATTGCTGAGTAAAATTTCGTTTTGGTGGATGAATCCTCTAATGAAAAGGGGGAAGAAGAAGACTCTCAACAGTGAAGATATACCGATGATGCGTGAGGAAGATCGAGCAGAAAGTTGTTACTTACAGTTCATAAACCAAATGAACGAGCAGAAAAGAAAAGACCAAAGTTCTCAATCATCAGTCTTCAGAGTCATTCTTTCATGCCATCGGAGGGATATATTATTGTCAGGATTTTTCGCTTTGTTGAAAATACTCTTTCTCTCTGCTGGTCCTCTGCTTCTTAATGCCTTCATTTTGGTTGCTCAGGGACACCAAAGTTTCAAATACGAAGGTCTTGTGCTTGCCATTTCACTTTTCTTTTCAAAAAGCATTGAATCCATATCACAAAGACAATGGTATTTCAGAACCAGGCTTGTTGGTCTTAAAGTCAGGTCTTTGCTCTCAGCAGCCATTTATAAGAAGCAATTGCGATTGTCCAGTGAAGCTAAGTTGATGCACTCGAGTGGTGAAATCATGAACTACGTTACCGTAGACGCGTATAGGATTGGAGAATTCTCATTCTGGTTCCACCAAACTTGGACCACGAGTGTTCAGCTTTGTATTGCACTTTTGATCCTCTACAAAGCAGTGGGAATAGCAACCATAGCCTCCTTATTAGTGATAATTCTATGTGTAGTTGGGAATACTCCAATTGCCAAGCTACAACATAAGTATCAGAGTAAATTGATGGCGGCACAAGATGAGAGATTGAAGACGTTTACAGAGGCCCTTGTAAACATGAAAGTGTTGAAGTTATATGCGTGGGAAACTCATTTCAAGAATGTAATTGAGAAGTTAAGAAAGGAGGAGCAGAGGTGGCTGTCAGCCGTGCAATTTCGAAAGGGATACAATGGCATTCTCTTTTGGTCGTCTCCTGTTATCGTCTCTGTTGCAACCTTCGGGGCATGTAGTTTTTTGAACATTCCCCTACATGCCAATAATGTCTTCACTTTCGTATCTGCATTGCGTCTTGTTCAAGAACCTGTCAGATCTATGGGTGATGTCGTTGCGGTGATCATTCAAGCAAGGGTCTCATTTACACGTATTATTAACTTTCTGGAGGCACCTGAGCTGCAAACTTCAAGTGTTCCTAGAAAGTGTGTGAAGATGAATAATGACTGCACCATTCGGATCAGTTCAGCATCTTTCTCGTGGGAAGAGAATTCGACAAGGCCTACTCTTCGTGATATAAATCTAGAGGTCAAGCCAGGTTCAAAGGTTGCAATATGTGGAGAAGTTGGCTCAGGAAAATCTACTCTTCTAGCAGCCGTTCTTGGTGAAATTCCAAATGTTGAGGGAAATATTCAAGTTTATGGAAGGATTGCTTATGTGTCTCAAACGGCATGGATCCAAACAGGGTCCATACGAGATAACATTTTATTTGGCTCTGAAATGGACAATTGGAGATATCGAGAAACACTCGAGAAGTGTTCATTGGTGAAGGACCTCGAGTTACTTCCTTATGGTGATCTCACTGAGATTGGTGAAAGAGGAGTAAATCTCAGTGGTGGACAAAAGCAGAGGATTCAACTTGCTCGTGCGCTATATCAAAATGCCGACATATATCTTTTGGACGATCCATTTAGCGCTGTCGATGCTCATACTGCCACAAGTTTGTTCAATGGATATGTTATGGAAGCACTCTCGGGAAAAACGGTTCTTCTTGTGACTCATCAAGTCGATTTCCTGCCAGCTTTTGATTCTGTCCTGCTGATGTCTGATGGGGAAATTCTAAAAGCAGCTCCTTATGATCAGCTGTTGGCACATAGTAAAGAATTTCAGGAACTTGTCAATGCACACAAAGAGACTGCTGGAACTGAAAGGCTTGCAGATATATCTGCTACCAAGAGTTTGAGAACATCTAGTAAAGAAATTAAGAAATCTTTTACAGAGAAACTGTCTGTAGCTTCTGATGCTAATCAGATAATTAAGCAGGAGGAGCGAGAAGTTGGAGACTCAGGATTCAAGCCTTATATTCAGTATCTGAATCAGAACAAAGGGTTCTTCTTCTTCTCCTTAGATGTTTTCTCCCAATTAGCATTTGTGGCATGTGGAATAACTCAAAACTCTTGGATGGCTTCGAACGTCGATAATCCCAACGTCAGCAACTCGCGCTTGATCATAGTTTACTTGTTGATTGGAGTTACTTCAACATTATTTTTGGCTTCAAGATCTCTTTTAACAGCTGTTTTAGGTCTGCAATCATCAAAATCATTGTTTTCTCAGCTACTAACATCTCTTTTTCGTGCACCGATGTCCTTCTATGACTCCACACCTCTTGGAAGGATACTTAGTCGGGTCTCAATGGATCTTAGTATTGTGGATCTTGATGTCCCGTTTAGTTTGATATTTGCTGTGGGGGCAACCTCCAATGCCTATGCTGCTCTCGGAGTTTTAGCTGTAATCACGTGGCAAGTTCTATTCATCTCCATACCGACAATCATTTTGGCAGTTTGCTTGCAGAGATACTATTTCGCTTCTGCTAAAGAACTCATGCGTCTTAATGGGACAACAAAGTCAATGGTAGCGAACCATTTGTCCGAATCCATAGCTGGAGCAATGACAATTCGAGCTTTTGAAGAGGAAGAGCGATTCTTTAAGAAAAATCTTGAGTTTGTTGATGGAAATGCTAGTCCTTTCTTTCACAACTTTTCAGCCAATGAGTGGCTGATACAGCGGTTAGAAATGCTCAGCGCGGTTGTCCTTGCCTCCGCTGCATTTTGCATAGTATTGCTACCAACTGGAAGCTTCAGCCCTGGTTTCATTGGAATGGCACTCTCTTATGGCCTTTCTTTAAATGTGTCCCTGGTCTTCTCCATCCAGAATCAATGTAATATAGCCAATCACATTATTTCTGTAGAAAGATTAAACCAATACATGCATTTATCAAGTGAGGCTCCCGAAATCATCGAAGCTAACCGTCCCCCGACCAACTGGCCCTCTATTGGCAAAGTGGAGATAATTGACTTGAAGATTCGGTATAGACCAAATACACCCCTTGTTCTTCATGGTATTAGCTGCACATTTGAAGGAGGACATAAGATTGGTATTGTTGGTCGGACTGGCAGTGGGAAATCTACTCTTTTAAGTGCCATATTCCGCTTGGTTGAGCCAGCAGGAGGAATGATTTTAGTTGATGATATCGACATCTGCTCGATTGGACTTCATGACCTGCGTTCACGTTTTGGAATTATACCTCAAGATCCAACCCTTTTTAAAGGGTCTGTTCGATACAATTTGGATCCCTTAGTCCAGCATACCGATGATGAAATATGGGAGGTACTCGGAAAGTGTCAACTTAGAGAGGTTGTCGAAGAGAGAGAGGCGGGATTGGATTCCTTGGTTGTGGAAGATGGTTCAAACTGGAGCATGGGACAGCGACAACTTTTCTGTTTAGGTCGTGCACTTTTGAGGAGAAGTCGAATATTGGTGCTTGACGAAGCAACTGCATCAATCGACAATGCCACCGATATGATTCTGCAGAAAACTATTCGATCTGAATTCGCAGACTGTACTGTAATTACAGTTGCTCACAGAATACCAACTGTTATGGATTGCACAATGGTGCTTGCTATAAGTGATGGGAGAATAGCAGAATACGACGAACCGACCACATTGATCAAGAGAGAAGGCTCCCTATTTGGACAGTTAGTCAAAGAATACTGGTCTCACTCACCATCTGCAGGATTATTTTGA 4599 41.94 MTPYNSKTPFIFNVTSSSSSSLHSIRLCTSSQSFNLLHHFPHLGLPKRSNFSLVIRVVWKLEAKGLNCHISLRDKKEEGNGGHMECVLWSQALTICFDFLLFILLVSNIVGKSMKRVHMSNRIRNGSGLLIFSAIFNGCVGLVYLGLGIWTLVEKLRKDHTALPLQLWLSASFHGFTWLLVSSIVSIWSKQLPRALLRLLSIAAFVFAGVVCVLSLFDAVSSKIVSAKMVLDVLSVLGSVLLLLCSFGCFSCQESEESINGNGLYTPLIDEANESGKLDPVTPLAKAGLLSKISFWWMNPLMKRGKKKTLNSEDIPMMREEDRAESCYLQFINQMNEQKRKDQSSQSSVFRVILSCHRRDILLSGFFALLKILFLSAGPLLLNAFILVAQGHQSFKYEGLVLAISLFFSKSIESISQRQWYFRTRLVGLKVRSLLSAAIYKKQLRLSSEAKLMHSSGEIMNYVTVDAYRIGEFSFWFHQTWTTSVQLCIALLILYKAVGIATIASLLVIILCVVGNTPIAKLQHKYQSKLMAAQDERLKTFTEALVNMKVLKLYAWETHFKNVIEKLRKEEQRWLSAVQFRKGYNGILFWSSPVIVSVATFGACSFLNIPLHANNVFTFVSALRLVQEPVRSMGDVVAVIIQARVSFTRIINFLEAPELQTSSVPRKCVKMNNDCTIRISSASFSWEENSTRPTLRDINLEVKPGSKVAICGEVGSGKSTLLAAVLGEIPNVEGNIQVYGRIAYVSQTAWIQTGSIRDNILFGSEMDNWRYRETLEKCSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATSLFNGYVMEALSGKTVLLVTHQVDFLPAFDSVLLMSDGEILKAAPYDQLLAHSKEFQELVNAHKETAGTERLADISATKSLRTSSKEIKKSFTEKLSVASDANQIIKQEEREVGDSGFKPYIQYLNQNKGFFFFSLDVFSQLAFVACGITQNSWMASNVDNPNVSNSRLIIVYLLIGVTSTLFLASRSLLTAVLGLQSSKSLFSQLLTSLFRAPMSFYDSTPLGRILSRVSMDLSIVDLDVPFSLIFAVGATSNAYAALGVLAVITWQVLFISIPTIILAVCLQRYYFASAKELMRLNGTTKSMVANHLSESIAGAMTIRAFEEEERFFKKNLEFVDGNASPFFHNFSANEWLIQRLEMLSAVVLASAAFCIVLLPTGSFSPGFIGMALSYGLSLNVSLVFSIQNQCNIANHIISVERLNQYMHLSSEAPEIIEANRPPTNWPSIGKVEIIDLKIRYRPNTPLVLHGISCTFEGGHKIGIVGRTGSGKSTLLSAIFRLVEPAGGMILVDDIDICSIGLHDLRSRFGIIPQDPTLFKGSVRYNLDPLVQHTDDEIWEVLGKCQLREVVEEREAGLDSLVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDMILQKTIRSEFADCTVITVAHRIPTVMDCTMVLAISDGRIAEYDEPTTLIKREGSLFGQLVKEYWSHSPSAGLF 1532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9688930 9696017 - CrPI670011_05g010490.1 Cre05g1049 497562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1049 1532 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1286 1520 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g1049 1532 SUPERFAMILY ABC transporter transmembrane region 974 1269 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre05g1049 1532 Gene3D ABC transporter type 1, transmembrane domain 332 655 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre05g1049 1532 Gene3D ABC transporter type 1, transmembrane domain 936 1267 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre05g1049 1532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1007 1249 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre05g1049 1532 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 677 900 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g1049 1532 Pfam ABC transporter 1303 1451 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g1049 1532 Gene3D - 1270 1521 IPR027417 -
Cre05g1049 1532 FunFam ABC transporter C family member 3 1269 1521 - -
Cre05g1049 1532 Pfam ABC transporter 695 829 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g1049 1532 SUPERFAMILY ABC transporter transmembrane region 354 658 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre05g1049 1532 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 282 1521 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cre05g1049 1532 SMART AAA_5 1312 1504 IPR003593 GO:0016887(InterPro)
Cre05g1049 1532 SMART AAA_5 704 877 IPR003593 GO:0016887(InterPro)
Cre05g1049 1532 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 362 642 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre05g1049 1532 Gene3D - 656 922 IPR027417 -
Cre05g1049 1532 ProSitePatterns ABC transporters family signature. 802 816 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g1049 1532 FunFam ABC transporter C family member 10 661 913 - -
Cre05g1049 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 900 IPR027417 -
Cre05g1049 1532 CDD ABCC_MRP_domain1 677 877 - -
Cre05g1049 1532 FunFam ABC transporter C family member 5 936 1267 - -
Cre05g1049 1532 CDD ABCC_MRP_domain2 1284 1504 - -
Cre05g1049 1532 Pfam ABC transporter transmembrane region 362 629 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre05g1049 1532 Pfam ABC transporter transmembrane region 973 1229 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre05g1049 1532 CDD ABC_6TM_ABCC_D1 363 650 IPR044746 GO:0140359(InterPro)
Cre05g1049 1532 FunFam ABC transporter C family member 10 345 658 - -
Cre05g1049 1532 CDD ABC_6TM_ABCC_D2 968 1261 IPR044726 GO:0140359(InterPro)
Cre05g1049 1532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1277 1513 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1049 K05666 - - csv:101210136 2608.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1049 Cre-Chr5:9688930 Cre09g0050 Cre-Chr9:791916 0.00E+00 dispersed
Cre05g1049 Cre-Chr5:9688930 Cre05g0358 Cre-Chr5:3268146 1.70E-298 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48