Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1050 ATGGCTGCAACCACTCTTCACATGGAAGTTCCTGTCAATGCCGCTTCTCTAAGGAAACGATTCCTTCTGAACTTCCATCGCCATCATTGCCAACGACCCACATTCATCTGGCCGGGGGTTTTCACTGAGCCAGTTGAAGACAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAACTGGAATGAGAGTAGTTCTGTGTGCAAATCCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCCAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGTGGCCCGATCCCTGCGAATACTCTTAGCCGCCTAACTGCGCTTGAGATTCTAAGCCTTAGGTTGAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCAAAGCTGGAAAGTTTGAATTCCTTGTATCTGCAATACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAGTTTGGAATAACCTCAGTGTCATTGATCTATCGAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAAGTTGAGTCATTTGACAGTTTTGAATCTTGCAAACAACTCATTTTCAGGCGAAATTCCGAACCTTGATATTCCAAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCCGGTAACAATGTTACTCAAGAACATAGTGCAATTCCCCCATCTTTTCCTCTCCAGCCTCCCACTGCTCAACCGACAGGAAAAGGCAAAGGACTGAGTCAATCTGCAATACTTGGTATTGCAATTGGTAGTTCAGTTATTGGGTTTATTTTGCTAGCTGTTTTGTTGACTGCTTGCTGGTTGAAAAAACGAAAGGAAAATATGAGTTCCCCCATGGAGCCCAAAAAGAAGGAAGCGTCTGTGAAGAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAATTTCTTTCAGGATTCTAATCTTGCATTTGACTTGGAAGACCTGTTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGCTACAAAGCAGCTTTGGAAGACTCAATGACTGTCGTAGTGAAGAGGCTGAATCAAGTGGCGACGGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAACGTTGTTTCCTTAAGAGCATACTATTATTCAAAGGACGAGAAACTCATGGTCTATGACTACTATGAACAAGGGAGTGTGTCTGCAATGTTACATGGTAAGGAAGGAGATGGTTTACATGTGTTAGATTGGGATACTCGGATGAAAATTGCTATTGGAGCAGCTCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCCCATGGAAACGTCAGAGCTTCAAACATTTTCCTCAACTCTAAAGGATATGGTTGTGTATCCGACGTTGGCTTGGCTGCGTTGATGAATTCAATTCTACTACCAGCCACAAGAACCCCAGGTTACCGAGCGCCTGAATTGACCGACACTCGAAGAGTATCACACGCAGCTGATGTCTACAGTTTTGGGGTGGTGTTGCTGGAGCTTCTGACTGGAAAATCTCCCATACATGTAGAAGGTTGTAATGAAGTTGTTAATTTGGTGAAGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTCAGGTATCCAAACATAGAAGAAGAGATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCCGAGCAAAGGCCAAAAATGACAGATATAATGTCGAGAATCGAGCAAGTTCGACAACACAGTACAGGAACCCAACCGTCATCGGGGTCAAAATCAGCGTATTCAACTCCCGTTCATGGTCCCACAAGCAGAAACGGTTCTATAAAATTCATTCCGCACCGAATCACCATTAGTTTTCCATCTCCTTCGTCGTTTCTCATCCTCATCCTCTCTTCGTCTTCTTCACAACAAACCCTCACACCAGACCTAAAGCGCCTTCACGAGAACCTCTCTCTTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTTTTCCTTGTCACCATTCATTTTCCTCCGGATTATCCTTTTAAGCCTCCTAAGGTGGCATTCAGAACTAAGGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCCCTAACTATTTCCAAGGTCTTACTTTCGATCTGTTCACTGTTGACGGATCCAAATCCGGATGACCCACTCGTGCCTGAGATCGCTCATATGTACAAGACTGACAGGAACAAATATGAGACAACCGCTAGGAGCTGGACGCAGAAGTATGCGATGGGCTAA 2454 44.42 MAATTLHMEVPVNAASLRKRFLLNFHRHHCQRPTFIWPGVFTEPVEDKQALLDFFHNIPHSPSLNWNESSSVCKSWTGVFCNSDESRVVALRLPGTGLRGPIPANTLSRLTALEILSLRLNRISGPFPFDFSKLESLNSLYLQYNKFSGPLPLDFSVWNNLSVIDLSNNLFNGSIPSSISKLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTQEHSAIPPSFPLQPPTAQPTGKGKGLSQSAILGIAIGSSVIGFILLAVLLTACWLKKRKENMSSPMEPKKKEASVKKRGFESQEQKNNLNFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSMTVVVKRLNQVATVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYEQGSVSAMLHGKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKCSHGNVRASNIFLNSKGYGCVSDVGLAALMNSILLPATRTPGYRAPELTDTRRVSHAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVKWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMTDIMSRIEQVRQHSTGTQPSSGSKSAYSTPVHGPTSRNGSIKFIPHRITISFPSPSSFLILILSSSSSQQTLTPDLKRLHENLSLGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9722473 9730577 + CrPI670011_05g010500.1 Cre05g1050 497563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1050 817 SMART ubc_7 673 816 - -
Cre05g1050 817 CDD UBCc 682 811 IPR000608 -
Cre05g1050 817 Gene3D Ubiquitin Conjugating Enzyme 669 817 IPR016135 -
Cre05g1050 817 PANTHER OS05G0588300 PROTEIN 45 631 IPR050994 -
Cre05g1050 817 SUPERFAMILY UBC-like 676 816 IPR016135 -
Cre05g1050 817 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 421 628 - -
Cre05g1050 817 Gene3D Phosphorylase Kinase; domain 1 310 420 - -
Cre05g1050 817 SUPERFAMILY Protein kinase-like (PK-like) 349 614 IPR011009 -
Cre05g1050 817 ProSiteProfiles Protein kinase domain profile. 345 623 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1050 817 Pfam Leucine Rich Repeat 184 201 IPR001611 GO:0005515(InterPro)
Cre05g1050 817 Pfam Leucine Rich Repeat 136 156 IPR001611 GO:0005515(InterPro)
Cre05g1050 817 Pfam Leucine Rich Repeat 206 227 IPR001611 GO:0005515(InterPro)
Cre05g1050 817 Pfam Leucine Rich Repeat 160 182 IPR001611 GO:0005515(InterPro)
Cre05g1050 817 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 674 816 IPR000608 -
Cre05g1050 817 Pfam Ubiquitin-conjugating enzyme 686 810 IPR000608 -
Cre05g1050 817 FunFam pollen receptor-like kinase 1 314 420 - -
Cre05g1050 817 Pfam Protein tyrosine and serine/threonine kinase 349 613 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1050 817 MobiDBLite consensus disorder prediction 617 643 - -
Cre05g1050 817 Gene3D Transferase(Phosphotransferase) domain 1 421 635 - -
Cre05g1050 817 FunFam Probable inactive receptor kinase RLK902 44 203 - -
Cre05g1050 817 Pfam Leucine rich repeat N-terminal domain 46 82 IPR013210 -
Cre05g1050 817 SUPERFAMILY L domain-like 56 230 - -
Cre05g1050 817 FunFam Ubiquitin-conjugating enzyme E2 D2 672 816 - -
Cre05g1050 817 Gene3D Ribonuclease Inhibitor 45 252 IPR032675 -
Cre05g1050 817 MobiDBLite consensus disorder prediction 617 646 - -
Cre05g1050 817 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 743 758 IPR023313 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0728 Cre-Chr4:25481720 Cre05g1050 Cre-Chr5:9722473 6.10E-183 dispersed
Cre05g1050 Cre-Chr5:9722473 Cre09g2306 Cre-Chr9:42322828 3.30E-240 dispersed
Cre07g1397 Cre-Chr7:28867471 Cre05g1050 Cre-Chr5:9722473 3.80E-33 dispersed
Cre05g1050 Cre-Chr5:9722473 Cre07g1833 Cre-Chr7:33691522 1.30E-50 wgd
Cre05g1050 Cre-Chr5:9722473 Cre09g2442 Cre-Chr9:43779032 3.60E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64140 PF07714 PK_Tyr_Ser-Thr 1.90E-34 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1050 - - - 0.0