Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1057 ATGAATGTTTTCAAATATCGTCACCGCTCTCGTCCACAGATTCTCAGAACCCTTCTCCTAAATCATTTCGTTGGTGAATTCCGTTCCCGAATAGGGTCCAAACAATGCTTCCGCACTCACTCAGAAGATCAACACATGGCCGAATTCATGGAATATTTAGATTCCCTGAAGAACTACGAGAAATTGGGTGTGCCCAGAGGCGCAGGCACTGATTCTGATGATGGGTTCGATCTCGGAAGGATGAGAAGGCTGATGGAGCGCCTGGGTAATCCACAATCCAAGTTTAAGGCAATTCACATTGCAGGAACGAAGGGAAAAGGGTCGACTGCGGCCTTCCTTTCTAACATTTTACGAGCAGAGGGATACTCCGTTGGTTGTTATACTAGTCCTCATATTGAAACTATAAGGGAACGTATTTGTCTCGGAAGATCTGGAGAGATGGTCTCTGGGAAGGCATTAAACTCTCTTTTCATAAGGAATAAAGAGTTTTTTGACCAGTCAGTAGAGCTTGAAAATGGGCGAATAAGTCACTTTGAGGTCCTTACTGCTATGGCATTCTCGCTCTTTGCTGAAGAGAATGTTGATGTTGCAGTCATTGAGGCTGGACTTGGTGGTGCACGAGATGCAACAAACATAATTTGCAGCTCTAGACTTGCTGCTGCAGTCATAACTTCAATTGGAGAGGAACACATGGCTGCCCTGGGTGGCTCTTTGGAAAGCATTGCAACGGCAAAGGCTGGAATAATTAAACGTGGTTGTCCAACCATTCTGGGTGGTCCATTCCTTCCAAGTATTGAGCGCATTCTTCGTGATAAAGCATTGTCCATGTCTTCGCCTGTAATTTCAGCCTCAGATCCTGGAAATAAAAGTACCACAAAAGGTGTAAGCCTGCTCAATGGAGGACTTTGCCAATGCTGCGACATAGTAATTCAAATAGACAATGAATTCATCGAGTTATTGGATGTCAACCTCCGCATGCTTGGGCGTCATCAACTTCAGAATGCAGCAACTGCAACTTGTGTTATTCTTACTCTCCGCAATTTAGGTTGGAGAATTTCAGATGCATCTGTCAGGAGTGGACTAGAGCAAACGTTCCTGGTCGGTAGGAGTCATTTCTTACCGGCCAAGGAAGCTGGGATTCTTGGACTACCTGGAGCAACAATATTGCTGGACGGAGCCCACACCAAAGACTCTGCTAAAGCATTAGTGGATACCATTCAAATGGCTTTTCCTGACGCTCGATTGGCTCTTGTGGTTGCAATGGCTAGTGATAAGGATCACATTGGTTTTGCCAGAGAATTCCTTCAAGGTGGAAAATTGGAGTCCATTGTCTTAACTGAAGCCCATATTGGTGGAGGCAAAGCAAGGACAACTTCAGCTGCTTTTCTAAGAGACTGCTGGATCCAAGCATCCGATGAATTGGGGATCCCTATTTCTTTAGAAACTAAAGATGCTCTGGTTTCCTTCACAAGCAAACTGGAAAACAGACCAGTATTGACTACCGAGACCTCGTTATTACATGCCATAATAATCGCTGCTGAGATTCTCAAGCAGAGAACGGAAGGCCGGCAAGGTCTTGTCATAGTAACCGGCTCTCTGCATGCTGTCTCAATGGTGTTATCTTCTCTTCATTCTTGA 1638 45.05 MNVFKYRHRSRPQILRTLLLNHFVGEFRSRIGSKQCFRTHSEDQHMAEFMEYLDSLKNYEKLGVPRGAGTDSDDGFDLGRMRRLMERLGNPQSKFKAIHIAGTKGKGSTAAFLSNILRAEGYSVGCYTSPHIETIRERICLGRSGEMVSGKALNSLFIRNKEFFDQSVELENGRISHFEVLTAMAFSLFAEENVDVAVIEAGLGGARDATNIICSSRLAAAVITSIGEEHMAALGGSLESIATAKAGIIKRGCPTILGGPFLPSIERILRDKALSMSSPVISASDPGNKSTTKGVSLLNGGLCQCCDIVIQIDNEFIELLDVNLRMLGRHQLQNAATATCVILTLRNLGWRISDASVRSGLEQTFLVGRSHFLPAKEAGILGLPGATILLDGAHTKDSAKALVDTIQMAFPDARLALVVAMASDKDHIGFAREFLQGGKLESIVLTEAHIGGGKARTTSAAFLRDCWIQASDELGIPISLETKDALVSFTSKLENRPVLTTETSLLHAIIIAAEILKQRTEGRQGLVIVTGSLHAVSMVLSSLHS 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9816334 9821418 + CrPI670011_05g010570.1 Cre05g1057 497570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1057 545 Pfam Mur ligase middle domain 100 341 IPR013221 GO:0005524(InterPro)|GO:0009058(InterPro)|GO:0016881(InterPro)
Cre05g1057 545 Pfam Mur ligase, glutamate ligase domain 385 461 IPR004101 GO:0009058(InterPro)|GO:0016881(InterPro)
Cre05g1057 545 ProSitePatterns Folylpolyglutamate synthase signature 2. 198 213 IPR018109 GO:0004326(InterPro)|GO:0005524(InterPro)|GO:0009396(InterPro)
Cre05g1057 545 Gene3D - 34 365 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Cre05g1057 545 FunFam Dihydrofolate synthetase 64 366 - -
Cre05g1057 545 Gene3D - 379 545 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Cre05g1057 545 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 382 543 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Cre05g1057 545 SUPERFAMILY MurD-like peptide ligases, catalytic domain 75 365 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Cre05g1057 545 ProSitePatterns Folylpolyglutamate synthase signature 1. 98 121 IPR018109 GO:0004326(InterPro)|GO:0005524(InterPro)|GO:0009396(InterPro)
Cre05g1057 545 PANTHER FOLYLPOLYGLUTAMATE SYNTHASE-RELATED 34 543 IPR001645 GO:0004326(InterPro)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0008841(PANTHER)|GO:0009396(InterPro)|GO:0009396(PANTHER)
Cre05g1057 545 NCBIfam bifunctional protein FolC 78 541 IPR001645 GO:0004326(InterPro)|GO:0005524(InterPro)|GO:0009396(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1057 K20457 - - csv:101208344 946.421
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1057 Cre-Chr5:9816334 Cre10g1694 Cre-Chr10:31132135 9.10E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g865 Blo06g01075 . . . . . . . Cmo16g00075 . . . . . Sed02g0861 . Cpe14g00058 Bhi01g01449 Tan01g0150 Cmetu09g1713 . . Mch10g0089 . . . . . . . . . . . . . . . . . . . Bda15g00774 . Bpe12g00371 . . . . . Cma16g00073 . Car16g00064 . . . . . . . . . . Cla05g00947 Cam05g1037 Cec05g1042 Cco05g1036 Clacu05g1028 Cmu05g0978 Cre05g1057 . Csa03g02195 Chy06g01258 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010225 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 32