Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1062 ATGGGACTCCCAAGGCAACTTTCCGGTGACCGGAAGTCCGTACAAGGTTCCAATTTTGACAATACTGAAGAAGCCAATTACAGTTCATGGCTGAAAAAACATCCTTGTGGTTTGGAATCGTTTGAGAGGATAATGAAAGGGCTAAAAAGGAAGAAGATTGTTGTGTTCTTGGATTATGATGGAACCCTTTCTCCCATTGTTGATGATCCTGATCGAGCTTTCATGTCTCCTGAGATGAGAGCAGCTGTGAGAGAAGTGGCAAAATGCTTTCCAACAGCAATAATAAGTGGAAGAAGCCGAGATAAAGTAAAAGAGTTCGTGAAATTGAGTAATGTCCATTATGCTGGGAGCCATGGAATGGACATTATGGCTCCAACATCCGACAATGAGGTCGATGCGGTTCCTTTTCAACCAGCCAAGAAGTTTCTACCAGCAATTCAACAAATTAGGCAAATATTAGAGGAAGAAACTAGAAAAATTGAAGGTGCAATGGTGGAGGATAATAGATTTTGTGTTTCTGTGCACTTTCGACATGTCCGCGAAAGGGATTTGGAAAAATTGGAAAAGAAGGTAGAGACTATTATTGAAAAATATCCAGATTTTCATATAACTCCGGGCAAAATGGTTATGGAAATAAGACCGACAATAGATTGGAACAAAGGACATGCAATGGAATATTATCTACACACTCTCGGACATACTAACGTTGAGGATGTGATTCCTCTATACATTGGAGATGATCGAACGGATGAAGATGCTTTCAAGGTAATACAAATGAGGGGACAAGGGATTGCAATACTTGTATCATCCATTCCAAAGCACACAAAAGCGTCTTACTCTTTGAAGGATCCATCACAAGTTCTTGCTTTTTTGTTAAGGCTAGCAAGATGGAGGAAGTGCTCATCTTCTTCAATTACAAACCCACTTCCTCAAATTTAG 939 40.04 MGLPRQLSGDRKSVQGSNFDNTEEANYSSWLKKHPCGLESFERIMKGLKRKKIVVFLDYDGTLSPIVDDPDRAFMSPEMRAAVREVAKCFPTAIISGRSRDKVKEFVKLSNVHYAGSHGMDIMAPTSDNEVDAVPFQPAKKFLPAIQQIRQILEEETRKIEGAMVEDNRFCVSVHFRHVRERDLEKLEKKVETIIEKYPDFHITPGKMVMEIRPTIDWNKGHAMEYYLHTLGHTNVEDVIPLYIGDDRTDEDAFKVIQMRGQGIAILVSSIPKHTKASYSLKDPSQVLAFLLRLARWRKCSSSSITNPLPQI 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9869735 9872496 - CrPI670011_05g010620.1 Cre05g1062 497575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1062 312 CDD HAD_TPP 54 289 - -
Cre05g1062 312 Gene3D - 55 281 IPR023214 -
Cre05g1062 312 SUPERFAMILY HAD-like 54 297 IPR036412 -
Cre05g1062 312 FunFam Trehalose 6-phosphate phosphatase 145 304 - -
Cre05g1062 312 NCBIfam HAD-IIB family hydrolase 55 260 IPR006379 -
Cre05g1062 312 Coils Coil 146 166 - -
Cre05g1062 312 Gene3D - 139 215 - -
Cre05g1062 312 Pfam Trehalose-phosphatase 56 285 IPR003337 GO:0005992(InterPro)
Cre05g1062 312 MobiDBLite consensus disorder prediction 1 20 - -
Cre05g1062 312 Coils Coil 177 197 - -
Cre05g1062 312 FunFam Trehalose 6-phosphate phosphatase 139 215 - -
Cre05g1062 312 NCBIfam trehalose-phosphatase 51 295 IPR003337 GO:0005992(InterPro)
Cre05g1062 312 FunFam - 53 105 - -
Cre05g1062 312 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 18 305 IPR044651 GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(InterPro)|GO:0005992(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1062 K01087 - - csv:101204169 467.233
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1062 Cre-Chr5:9869735 Cre07g1322 Cre-Chr7:27847797 9.90E-89 dispersed
Cre05g1062 Cre-Chr5:9869735 Cre04g1509 Cre-Chr4:33795515 3.40E-89 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g876 . . . . Bpe03g00178 . . . Cmo16g00071 . . . . . . . Cpe14g00053 Bhi01g01461 . . . . Mch10g0084 . . . . . . . . . . . . . . . Cme06g01082 . . . . . . . . . . . Cma16g00067 . Car16g00059 . . . . . . . . . . Cla05g00952 Cam05g1042 Cec05g1047 Cco05g1041 Clacu05g1033 Cmu05g0983 Cre05g1062 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010851 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 32