Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1063 ATGGTATGCAGCTACAATATAAGGAATGTGATTGCTCAGGCTGGACGTATAGGAATAATCAATAGACGGGTCCAAATCAACAATATCTGGAGGAGTTTGCCTTCCAATCTTGGATTTGTTCACACCTGGAAGCGTGAATATAGAACAAGTCTCATGATGATGGTAGATACGGGTGCATCGGAAAATCGTGGGCCGGTTGTTGATAAGCATCCAGAGAAAGATGAAGATGGTGGCTATACCAGTGGAGGGTGGAAAAGTGAAGATGGGAAACTTAGTTGGGGGTATTCAAGTTTCAGAGGGAAGAGGGCAACCATGGAAGATTTCTTTGATATTAAAATGTCGAAGGTTGATGGTCAAACCGTCTGCCTTTTTGGCATCTTTGATGGTCACGGTGGATCACGAGCTGCAGAGTTTTTGAAGGACCATCTCTTTGAGAATCTGATGAAGCACCCAAAATTTTTGATGGATACCAAATTAGCTATCAGTGAAACATATCAACAGACGGATGCTGAATTTTTAAATTCGGAAAAGGATACTTTAAGGGACGATGGCTCTACTGCTTCAACAGCTTTGCTGGTTGGCAATCATCTCTATGTTGCCAATGTTGGAGATTCACGTACTATTATATCAAAGGGGGGTGAAGCGATCCCTCTTTCCGAGGACCATAAACCAAACAGAACTGACGAGCGGAGGAGAATTGAAAATGCTGGGGGTGTTGTCATGTGGGCTGGCACTTGGAGGGTAGGAGGAGTGTTAGCAATGTCCCGTGCTTTCGGTAACAAGATGTTGAAGCAGTTTGTTGTGGCGGATCCTGATATTCAGGATCTTGAAGTAGACAAGGACATCGAGTTGCTTGTTCTCGCAAGTGATGGACTTTGGGACGTGGTACGCAACGAGGATGCAGTATTAGTTGCAGGGAAGGAAGATGAACCGGAGGCAGCTGCTCGGAAGCTAACTGAAGCGGCGTTTACCCGTGGTAGCGCTGACAATATAACATGCATCGTGGTGAAGTTTCATCATGACAATGCAGGTCCTGCTGCGGATACTCGAGAAAATAACTAA 1062 45.1 MVCSYNIRNVIAQAGRIGIINRRVQINNIWRSLPSNLGFVHTWKREYRTSLMMMVDTGASENRGPVVDKHPEKDEDGGYTSGGWKSEDGKLSWGYSSFRGKRATMEDFFDIKMSKVDGQTVCLFGIFDGHGGSRAAEFLKDHLFENLMKHPKFLMDTKLAISETYQQTDAEFLNSEKDTLRDDGSTASTALLVGNHLYVANVGDSRTIISKGGEAIPLSEDHKPNRTDERRRIENAGGVVMWAGTWRVGGVLAMSRAFGNKMLKQFVVADPDIQDLEVDKDIELLVLASDGLWDVVRNEDAVLVAGKEDEPEAAARKLTEAAFTRGSADNITCIVVKFHHDNAGPAADTRENN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9878767 9882731 - CrPI670011_05g010630.1 Cre05g1063 497576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1063 353 Gene3D - 84 343 IPR036457 -
Cre05g1063 353 SUPERFAMILY PP2C-like 88 339 IPR036457 -
Cre05g1063 353 PANTHER PROTEIN PHOSPHATASE 78 337 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cre05g1063 353 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169(InterPro)
Cre05g1063 353 MobiDBLite consensus disorder prediction 60 83 - -
Cre05g1063 353 ProSiteProfiles PPM-type phosphatase domain profile. 92 338 IPR001932 -
Cre05g1063 353 Pfam Protein phosphatase 2C 96 331 IPR001932 -
Cre05g1063 353 CDD PP2Cc 94 338 IPR001932 -
Cre05g1063 353 MobiDBLite consensus disorder prediction 63 81 - -
Cre05g1063 353 SMART PP2C_SIG_2 90 338 IPR001932 -
Cre05g1063 353 FunFam Probable protein phosphatase 2C 76 84 344 - -
Cre05g1063 353 SMART PP2C_4 82 336 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1063 Cre-Chr5:9878767 Cre05g1771 Cre-Chr5:29588318 6.80E-94 dispersed
Cre05g1063 Cre-Chr5:9878767 Cre05g1069 Cre-Chr5:9954650 1.40E-33 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1063 K17506 - csv:101203681 693.73