Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1065 ATGCCTGTAGGCTTGCCCTCAGAGAAGAAAATTCTTGATCCACAAGGGCCATTTCTTCAAAGTTGGAACAAGATATTTGTGCTGTCTTGTGTGATTTCTGTTTCGTTGGATCCTTTGTTCTTTTATGTTCCTGTGATTGATAATAGAAAGATGTGCCTTAGGTTAGATGGGAAAGTGGAGGCTGTAGTCTGTATATTGCGATTTTTTACAGATTTGTTCTATGTTGTGCATATTGTTTTTCAGTTTCGTACAAGATTTATTGGTCCCTCTTACCGAGTATTTCGAAGAGGTGTTTTAGTAGAAGATTCCTTGACAATAGCAACGAGGATTGATTCAACTCATATTGAGGTGGTGATTCTGATAATGAGAGGTTCGAGATCCTTGAATACGAAGGACTTGCTGAAATATGCTGTATTATGTCAATTTGTGCCAAGGTTTCTTCGAATCTATCCACTGTACAAAGAAGTTACAAGGACCTCGGGCATACTCATTGAAACGGCTTGGGCAGGAGCTGCATTTAATCTCTTTCTCTACATGCTAGCTGGCCACGTATTTGGGGCAATCTGGTACTTATGTTCCATAGAACGAGCAACCCAGTGCTGGCAAGATGCTTGTAGCAAGCATCCTGACTGTACCTTTACTTCCTTGTATTGTGATCATAATTACAGTAATGAAGGGAATCTATTCCTCACTCCCTTCAACCTGATATTGTGGAGTCGGATTTTCCGTTCCCTGCTTCTGGTGGGGCTTGAGGAATCTAAGCTGTTTGGGGCAAAATCTTTCTACAAGTCCTTGCACATGGGAAAACTGCTATGCCATTTTCGTTTGCGTCTCTGGCTTAGTGTTGTTCGCGTCTCTCCTAGGCAACGTGCAGATGTATTGGCGATCCACAAACACAAGAGTGGAGGAGATGAGATTGAGAAGGAAAGATCGCCATCTTTGCTCGGATTTGCTCATGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGACGCGATGTGTGCTCGTCTCAAGCCAGTGCTGTACACAGAAGAAAGCTGCATTGTTTGGGAAGGCGATCCAGTTGATGAGATGCTCTTCATAATGAGGGGCAAGCTCTTAACCATGACTACAAATGGTGGGAGAACTGGATTCTTCAACTCTGGTTTCCTCATGGCTGGTGATTTCTGTGGAGAAGAGCTATTGACTTGGGCTCTAGACCCTCATTCCTCAACCAATCTCCCTATTTCAACTCGAACTGCCCAATCTCTAACGGAAGTCGAAGCATTTGCTTTTGAATCCAACGACTTGAAATTTGTAGCCTCTCAATACCACAGACTTCACAGCAAGCAGGTACGTCAGATTTTCAGATTTTACTCACAGCAGTGGAGAACTTGGGCAGCTTGGTTTTGTAGAAGCAACATGGCGGTGGTGACGCCATCAAAGAAATAA 1434 43.17 MPVGLPSEKKILDPQGPFLQSWNKIFVLSCVISVSLDPLFFYVPVIDNRKMCLRLDGKVEAVVCILRFFTDLFYVVHIVFQFRTRFIGPSYRVFRRGVLVEDSLTIATRIDSTHIEVVILIMRGSRSLNTKDLLKYAVLCQFVPRFLRIYPLYKEVTRTSGILIETAWAGAAFNLFLYMLAGHVFGAIWYLCSIERATQCWQDACSKHPDCTFTSLYCDHNYSNEGNLFLTPFNLILWSRIFRSLLLVGLEESKLFGAKSFYKSLHMGKLLCHFRLRLWLSVVRVSPRQRADVLAIHKHKSGGDEIEKERSPSLLGFAHVPMFEKMDEQLLDAMCARLKPVLYTEESCIVWEGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSGFLMAGDFCGEELLTWALDPHSSTNLPISTRTAQSLTEVEAFAFESNDLKFVASQYHRLHSKQVRQIFRFYSQQWRTWAAWFCRSNMAVVTPSKK 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9894485 9903964 + CrPI670011_05g010650.1 Cre05g1065 497578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1065 477 CDD CAP_ED 322 438 IPR000595 -
Cre05g1065 477 SMART cnmp_10 322 453 IPR000595 -
Cre05g1065 477 FunFam Cyclic nucleotide-gated ion channel 1 320 438 - -
Cre05g1065 477 SUPERFAMILY Voltage-gated potassium channels 13 192 - -
Cre05g1065 477 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 225 - -
Cre05g1065 477 Pfam Ion transport protein 21 239 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1065 477 ProSiteProfiles cAMP/cGMP binding motif profile. 322 406 IPR000595 -
Cre05g1065 477 Gene3D Jelly Rolls 320 440 IPR014710 -
Cre05g1065 477 SUPERFAMILY cAMP-binding domain-like 318 441 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1065 Cre-Chr5:9894485 Cre10g1605 Cre-Chr10:30159402 1.30E-103 dispersed
Cre05g1065 Cre-Chr5:9894485 Cre05g1066 Cre-Chr5:9916928 7.10E-62 tandem
Cre05g1065 Cre-Chr5:9894485 Cre09g2458 Cre-Chr9:43895116 5.70E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1065 K05391 - osa:4341189 435.261