Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1078 ATGGGCTACGGCAGGCTCCACAAAACCGACCCCGGCGGCACTTCTTCCTCCGCCGCTGCCTTCCAACTCCCCGACCACCACCACCACCCCCTTTCATTTACCCCTCCCAACCCAAGGAGAACACGCCTTTTCGTTATTTCCCTTCTTTCTCTCCTTCTCATCGTCGCCGCCGCTGTCTCCGCCACCTTTCTCATCGGACTCCGAACTGCCTCCCCGGCTCGATCCGACCCCAACCTCCCTCGAAAACCAACCCAGGCTATTTCCAAGGCTTGTGGTCGAACTCGCTTCCCGACTCTCTGTGTCAACTCGCTCCTCGATTTCCCTGGTTCTCTCAACGCCAACGAACAGGATCTCGTCCACATTTCCTTCAATATCACTCTCCAGCATCTCAACAAAGCGCTCTATTTGTCCTCTGAGATTTCCTCTCTTCAAATGGATCTTCGTGTTCGCTCCGCTTACGATGCTTGTCTTGAACTCCTTGACGACTCCGTTGATGCTCTCACACGTTCCTTGCAATCCGTCGCGCCTTCTTCCTCCTCCGGCACTCCGCAGCGCCTTGGCTCCTCTGAGGACGTCATTACCTGGCTTAGCGCCGCCCTTACCAATCAAGACACGTGTACGGATGGATTCTCTGAACTCTCCGGCTCGGTCAAAAACCAAATGGCTGATAAACTTCACAATTTGTCCGAACTTGTCAGTAATTGCTTGGCGCTGTTTTCCGGTAGTGAAACGAGCGATTTCTCCGGAGTGCCGATTCAGAACAAGCGACGGTTGATGAACGCCGGACACGACGAGGATAATTCCGGTAACTTCCCTGGGTGGATGAGTCGGAGAGAAAGGAGGTTACTGACGTTACCGGTGGGAGCGTTACAAGCCGATATTGTGGTTTCTCAGAACGGTAGCGGAACGGTGAAAACGATCGCCGAAGCGATCAAAAAGGCGCCGCAGTACAGTAATAGAAGGACGATCATATACGTGATGGCAGGAAGGTACGAAGAGAAAAATCTGAAGGTGGGGAGAAAAAAAACGAACCTCATGTTTGTGGGGGATGGCAAGGGTAAAACTGTCATTTCGGGTGCTAAAAGTGTCTTTGATAATGTGACAACTTTTCACACGGCGTCGTTTGCGGCCACCGGCGCCGGTATAATCTTGAGGGACATGACATTTGAGAATTGGGCTGGACCGGGGCGCCACCAGGCGGTTGCGCTTCGAGTTGGCGCCGATCATGCGGTGGTGTACCGCTGCAACATAATCGGGTATCAAGACACTCTGTACGTTCATTCAAACCGCCAATTTTACCGAGAATGCGACATCTACGGGACGGTGGATTTCATCTTCGGGAATGCGGCGGTGGTGTTTCAGAACTGCAGCATCTACGCTCGAAAGGCAATGGCGCTTCAAAAGAACACAATCACCGCCCAAAACCGGAAGGATCCGAATCAGAACACCGGAATTTCAATCCACGCCTGCCGGATTTTACCCGCCTCCGATCTAGCATCGTCTAACGGCACAAACCCGACATATCTTGGCCGTCCGTGGAAATTATACTCCAGAGTCGTGTACATGTTATCGTATATCGGGAGCCACGTGCATCCTCGCGGTTGGTTGGAATGGAACGCAACGTTTGCATTGGACACGCTGTATTACGGTGAGTATATGAATTATGGGCCGGGGGGGGCGGTGGGCCAGAGGGTGACGTGGCCTGGGTATCGAGTCATAACGTCCACGGTAGAGGCGAGTAAGTTCACGGTGGCTCAGTTCATTTACGGCTCCTCATGGTTGCCGTCCACTGGAGTTGCATTCCTCGGAGGGCTAAATGTGTAA 1824 53.07 MGYGRLHKTDPGGTSSSAAAFQLPDHHHHPLSFTPPNPRRTRLFVISLLSLLLIVAAAVSATFLIGLRTASPARSDPNLPRKPTQAISKACGRTRFPTLCVNSLLDFPGSLNANEQDLVHISFNITLQHLNKALYLSSEISSLQMDLRVRSAYDACLELLDDSVDALTRSLQSVAPSSSSGTPQRLGSSEDVITWLSAALTNQDTCTDGFSELSGSVKNQMADKLHNLSELVSNCLALFSGSETSDFSGVPIQNKRRLMNAGHDEDNSGNFPGWMSRRERRLLTLPVGALQADIVVSQNGSGTVKTIAEAIKKAPQYSNRRTIIYVMAGRYEEKNLKVGRKKTNLMFVGDGKGKTVISGAKSVFDNVTTFHTASFAATGAGIILRDMTFENWAGPGRHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSIYARKAMALQKNTITAQNRKDPNQNTGISIHACRILPASDLASSNGTNPTYLGRPWKLYSRVVYMLSYIGSHVHPRGWLEWNATFALDTLYYGEYMNYGPGGAVGQRVTWPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVAFLGGLNV 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10103828 10106338 + CrPI670011_05g010780.1 Cre05g1078 497591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1078 607 PANTHER PECTINESTERASE 45 596 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre05g1078 607 SUPERFAMILY Pectin lyase-like 289 603 IPR011050 -
Cre05g1078 607 SMART PMEI_2 82 238 IPR006501 GO:0004857(InterPro)
Cre05g1078 607 FunFam Pectinesterase 287 605 - -
Cre05g1078 607 Pfam Plant invertase/pectin methylesterase inhibitor 86 238 IPR006501 GO:0004857(InterPro)
Cre05g1078 607 ProSitePatterns Pectinesterase signature 2. 438 447 IPR033131 -
Cre05g1078 607 Pfam Pectinesterase 293 590 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre05g1078 607 FunFam Pectinesterase 83 242 - -
Cre05g1078 607 MobiDBLite consensus disorder prediction 1 20 - -
Cre05g1078 607 Gene3D - 287 605 IPR012334 -
Cre05g1078 607 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 241 IPR035513 -
Cre05g1078 607 CDD PMEI-like_3 90 240 - -
Cre05g1078 607 NCBIfam pectinesterase inhibitor domain 60 239 IPR006501 GO:0004857(InterPro)
Cre05g1078 607 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 240 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1078 Cre-Chr5:10103828 Cre09g0532 Cre-Chr9:4994228 2.60E-133 dispersed
Cre05g1078 Cre-Chr5:10103828 Cre09g2465 Cre-Chr9:43976047 3.50E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1078 - - - 0.0