Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1081 ATGGCCGCCGCTGCTCTCAGGTCCAGGTCTTCCAAGGAAGTTGCCACTTTAACCCTTTCTCGTTGTAGACACTGTATATCCAATTCTATTCACGCTGCTACCAACCCCAGTTCTCACTGCATCAACCGTAACAAACCCAACGACCTTTATCTCAACTCGCCTTACCACTTGGTCTCTTTCAAGCCCGTCTCACTCAGAGGCGACTTCGTCGACAACGGGACTCAACCCCCCGATCATCGTAGGATTTACCAGAATTCTACCAAGAACTTGAATCACAAGTTCAGCAAGAGGGGTTGTTTTATGAGCACTTATGGAGACCCGCCGGAGGTGTGGTCTGGAGATGGGATTGTAATTCGTGGGAGTAATTCAAGCTTGAATGGTCGCGGTGGCGGCGGTGGCAGCGGTGGCAACTCCGACTCTGGTTCTGGTGGTGGGTTTGCCTCGAACTCCAATGATGGGTGTTGGGGTGGCTCTAATTTGGGACCTAATTTCCCTACTCCGAAGGAAATCGCCAAGGGGCTTGATAAGTTTGTGATTGGTCAGGAGAGAGCTAAAAAGGTGCTCTCTGTGGGAGTTTACAATCACTACAAGCGCATCTATCATGAATCGCTACAAAGGCCGACAGGAGATACAGTTAACAACAAAGCTGATGCTGTTGATGATGATAAAGTGGAACTTGAGAAAAGTAACATCCTTCTGATGGGGCCAACAGGCTCAGGGAAAACACTACTCGCCAAAACCTTGGCACGGTTTGTTAATGTCCCCTTTGTTATTGCAGATGCAACTACCCTAACACAGGCAGGATATGTTGGAGAAGATGTGGAGTCTATATTATACAAACTTCTGATGGTTGCTGATTATAATGTGGCAGCTGCACAGCAGGGCATTGTTTACATTGATGAAGTCGATAAAATTACCAAGAAGGCAGAGAGCCTTAATATTAGCAGAGATGTGTCAGGAGAGGGCGTGCAGCAGGCATTATTAAAAATGCTAGAAGGAACGATTGTCAATGTGCCTGAGAAGGGCGCACGAAAGCATCCCAGAGGTGAAAATATCCAGATTGACACTAAGGATATTCTTTTCATATGCGGGGGTGCCTTCATTGACTTGGAAAAAACAATCTCAGAAAGGCGCCAAGATTCTTCTTTAGGGTTTGGGGCCCCAGTTCGTGCAAACATGAGGGCAGGTGGTGTTACAGATGCCATGGTTACTTCTTCTCTGTTGGAGACTGTTGAAAGTAGTGATCTCATTGCATATGGGTTGATACCCGAATTTGTTGGTCGATTCCCAATCCTTGTCAGTTTGTCAGCCCTAACAGAAAACCAACTTGTTCAGGTCTTGACAGAGCCAAAAAATGCATTAGGAAAGCAGTATAGAAAGATGTTCCAAATGAATGATGTCAAGCTCCACTTCACAGAAAATGCCCTGAGATTAATAGCAAGAAAGGCAATGTTGAAGAACACTGGAGCACGTGGTTTGCGATCAATATTGGAGAATCTATTGATGGATTCTATGTATGAGATTCCTGATGTTAGAACAGGTGAGAATGTAATTGATGCTGTCATCGTTGATGAAGAATCCATTGGGTTGGACAGACCCGGTTCTGGTGCCAAAATTCTTTATGGAAAGGGTGCATTGGATCGCTATCTTTCAGGACAAAAGGTAGAAGAGAGAAAGGCAACAAGTCAGGATTCCGAAAGAGAGCCCGAACCTGAAGGTGAAACAGATCTTCCTTCAGTTGTTGCCAGCGGCATTGGGGTTGTCTTCATTTCTGCAGATTTTTTGTTGTTGTTAATGGATTTGGATAGTATTGAGTGTGTATCATCTTCTGATGGTCTCGATGAAGATGAGATCCATCTTCACCACACTCTTCATCCTTATTCCCATTCTCATCATCATCCAGAGTTGTCAGCGACGAAGCCACGTAATGGAAGCAATAATAGCGGTATAACAGTTCCCACTGCGACTGCTCCCGCCACTAGCGTCCATGAATTGCTTGAGTGCCCTGTCTGTACCAATTCTATGTACCCTCCCATCCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACACGGGTTCATAATCGTTGCCCTACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTCGAGAAGGTGGCAGAGTCGCTTGAATTGCCTTGCAAGTATTATTCATTGGGATGTACTGAGATATTCCCATACTACAGTAAACTTAAGCACGAGGCTTTGTGCAATTATAGACCCTATAGTTGCCCATATGCTGGTTCGGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTGAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAAAATGCCACTTGGATGCTTACTGTGTTCCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCCTTTCAGCTTGGCATGGCCCCAGTCTATATGGCTTTCCTTCGTTTCATGGGTGATGAGAATGAGGCACGAACCTACAGCTACAGTCTCGAGGTTGGTGGATACGGGCGAAAACTAATATGGGAGGGCACCCCGCGAAGTATAAGAGATAGTCATCGAAAAGTGAGGGACAGCCATGATGGGCTAATCATTCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGGAAGGAACTGAAACTAAGAGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCTGGATTCATTCATTCAACACTAAAGTCAAGTTTAGATAATGGTCAACAAGAAATCAATCAGAAACTGAGAAGAAACAAGAATCATTTGCAAGATGGTCTCGATGAAGACGAGATCCATCTGCACCACACTCTTCATCCTTATTCCCAATCTCTTCATCTTCCCGAGTTGTCCACATCGAAGCAACGTTATGGAAACAACAACAGCGCTGTGAGCGGCCCAACTGCAACTGCGCCGGCAACTAACGTTCATGAATTGCTGGAGTGCCCCGTGTGCACTAATTCTATGTACCCTCCCATTCATCAGTGCCACAATGGACATACCTTATGTTCTACATGTAAAACGAGAGTTCACAATCGGTGCCCAACTTGTAGACAAGAGCTTGGAGATATTAGGTGCTTAGCACTGGAGAAGGTGGCAGAGTCACTTGAACTGCCTTGCAAGTACTATTCGTTGGGTTGCTCTGAGATATTCCCATACTACAGTAAACTTAAGCATGAGGGTTTGTGCAACTACAGACCCTATAGTTGCCCATATGCTGGTTCAGAATGCTCTGCTGTTGGGGACATTCCTTTCCTTGTTGCCCATCTCAGGGATGATCATAAGGTGGATATGCACACTGGCTGCACATTTAACCATCGCTATGTGAAATCCAATCCAAGGGAAGTGGAGAATGCCACTTGGATGCTTACTGTTTTTCATTGTTTTGGTCAATATTTCTGCCTTCACTTTGAAGCTTTTCAGCTTGGCATGGCTCCAGTCTACATGGCTTTCCTGCGTTTCATGGGCGATGAGAATGAGGCGCGAACCTACAGCTACAGTCTCGAGGTTGGTGGATATGGACGAAAACTGATATGGGAGGGTACACCACGAAGTATTAGAGATAGTCATCGAAAAGTCAGGGACAGCCACGATGGATTAATCATCCAAAGAAATATGGCTCTTTTCTTCTCTGGTGGGGACAGAAAGGAACTGAAGCTGAGGGTTACAGGAAGGATATGGAAGGAACAAAACCCAGATGCCGGTGTCTGCATACCAAACCTTTGTAGCTAA 3810 45.35 MAAAALRSRSSKEVATLTLSRCRHCISNSIHAATNPSSHCINRNKPNDLYLNSPYHLVSFKPVSLRGDFVDNGTQPPDHRRIYQNSTKNLNHKFSKRGCFMSTYGDPPEVWSGDGIVIRGSNSSLNGRGGGGGSGGNSDSGSGGGFASNSNDGCWGGSNLGPNFPTPKEIAKGLDKFVIGQERAKKVLSVGVYNHYKRIYHESLQRPTGDTVNNKADAVDDDKVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGENIQIDTKDILFICGGAFIDLEKTISERRQDSSLGFGAPVRANMRAGGVTDAMVTSSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLVQVLTEPKNALGKQYRKMFQMNDVKLHFTENALRLIARKAMLKNTGARGLRSILENLLMDSMYEIPDVRTGENVIDAVIVDEESIGLDRPGSGAKILYGKGALDRYLSGQKVEERKATSQDSEREPEPEGETDLPSVVASGIGVVFISADFLLLLMDLDSIECVSSSDGLDEDEIHLHHTLHPYSHSHHHPELSATKPRNGSNNSGITVPTATAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCTEIFPYYSKLKHEALCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGFIHSTLKSSLDNGQQEINQKLRRNKNHLQDGLDEDEIHLHHTLHPYSQSLHLPELSTSKQRYGNNNSAVSGPTATAPATNVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCSEIFPYYSKLKHEGLCNYRPYSCPYAGSECSAVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARTYSYSLEVGGYGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNPDAGVCIPNLCS 1269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10151954 10169429 - CrPI670011_05g010810.1 Cre05g1081 497594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1081 1269 ProSiteProfiles Zinc finger SIAH-type profile. 721 781 IPR013010 GO:0008270(InterPro)
Cre05g1081 1269 FunFam E3 ubiquitin-protein ligase SINAT5-like 1117 1249 - -
Cre05g1081 1269 FunFam E3 ubiquitin-protein ligase SINAT3 949 1059 - -
Cre05g1081 1269 FunFam E3 ubiquitin-protein ligase SINAT3 609 719 - -
Cre05g1081 1269 SMART ClpB_D2_small_2 438 530 IPR019489 -
Cre05g1081 1269 MobiDBLite consensus disorder prediction 552 574 - -
Cre05g1081 1269 MobiDBLite consensus disorder prediction 626 649 - -
Cre05g1081 1269 ProSiteProfiles Zinc finger RING-type profile. 668 704 IPR001841 -
Cre05g1081 1269 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 1008 1043 IPR049548 -
Cre05g1081 1269 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 668 703 IPR049548 -
Cre05g1081 1269 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 437 535 - -
Cre05g1081 1269 SMART AAA_5 227 389 IPR003593 GO:0016887(InterPro)
Cre05g1081 1269 CDD RING-HC_SIAHs 666 704 - -
Cre05g1081 1269 SUPERFAMILY TRAF domain-like 721 913 - -
Cre05g1081 1269 ProSiteProfiles Zinc finger SIAH-type profile. 1061 1121 IPR013010 GO:0008270(InterPro)
Cre05g1081 1269 CDD Sina 1122 1250 - -
Cre05g1081 1269 MobiDBLite consensus disorder prediction 122 145 - -
Cre05g1081 1269 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 1119 1249 IPR008974 GO:0005515(InterPro)
Cre05g1081 1269 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 779 909 IPR008974 GO:0005515(InterPro)
Cre05g1081 1269 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 163 524 IPR004487 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Cre05g1081 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 523 IPR027417 -
Cre05g1081 1269 Pfam Sina, zinc finger 717 792 - -
Cre05g1081 1269 Pfam Sina, zinc finger 1057 1132 - -
Cre05g1081 1269 CDD RecA-like_ClpX 165 435 - -
Cre05g1081 1269 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 21 554 IPR050052 GO:0005524(PANTHER)|GO:0005759(PANTHER)|GO:0016887(PANTHER)|GO:0051603(PANTHER)
Cre05g1081 1269 Pfam Sina, TRAF-like domain 812 909 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cre05g1081 1269 Pfam Sina, TRAF-like domain 1152 1249 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cre05g1081 1269 FunFam E3 ubiquitin-protein ligase SINAT3 1060 1116 - -
Cre05g1081 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1061 1116 IPR013083 -
Cre05g1081 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 721 776 IPR013083 -
Cre05g1081 1269 CDD RING-HC_SIAHs 1006 1044 - -
Cre05g1081 1269 FunFam E3 ubiquitin-protein ligase SINAT5-like 777 909 - -
Cre05g1081 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 972 1060 IPR013083 -
Cre05g1081 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 631 720 IPR013083 -
Cre05g1081 1269 ProSiteProfiles Zinc finger RING-type profile. 1008 1044 IPR001841 -
Cre05g1081 1269 SUPERFAMILY RING/U-box 655 707 - -
Cre05g1081 1269 SUPERFAMILY TRAF domain-like 1061 1253 - -
Cre05g1081 1269 CDD Sina 782 910 - -
Cre05g1081 1269 Gene3D - 437 534 - -
Cre05g1081 1269 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 158 436 - -
Cre05g1081 1269 Gene3D - 160 436 IPR027417 -
Cre05g1081 1269 Pfam AAA domain (Cdc48 subfamily) 227 431 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre05g1081 1269 MobiDBLite consensus disorder prediction 552 578 - -
Cre05g1081 1269 Pfam C-terminal, D2-small domain, of ClpB protein 438 507 IPR019489 -
Cre05g1081 1269 FunFam E3 ubiquitin-protein ligase SINAT3 720 776 - -
Cre05g1081 1269 SUPERFAMILY RING/U-box 995 1047 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1081 Cre-Chr5:10151954 Cre08g0167 Cre-Chr8:3808150 5.70E-183 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1081 K03544 - csv:101215939 1006.51