Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1090 ATGGAGATGGATGTGATGCTTTCTGCTACAACTCGTCGTAAGATCCGAATGGCTTGTATACAGTATGGTAGAAATGCACTCCAGAAAATTATTAAAAATAGCAGGCTTCACCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGAGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTGACAACAAGCATTGAGAAGCTTGGGAAAGCTGGAGAGACGGTTAAGGTTGCCCCTGGATACTTTCGGAACCATCTTATGCCCAAGTTGTTGGCTGTTCCAAACATTGACAAGTATGCTTATCTGATCAAGGAGCAACGCAGGATTTACCAACCAGTTGAGGAAGAGGTCGTTAAGGTTGTAACGGTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAAACGTCTGGATAGTACTCAGCTGGTTTTGAGGAGGCTAATTGACAAGGAAAAGTTTCGTACTCGTGCTACAAAAGACGAGCCCTTAGCTTTGCAATCTTCTGTGACAGTAGACGACATTGTTGCTGAGGTGGCACGACAATTTTCTGTTCAAATTGCGCCCGAAAATCTGAATTTACCATCCCCCCTGTCCACATGTGGTGAATATGAAGTACCGCTTCGCTTTCCAAAGTCGATCCCCTTGCCTGAAGGAAAGATCTACTGGGCCCTCAAAGTGAAAGTCCGTAGAGCAGTGGACTATTATTGCATCATTGGCAAAAGAGAAGTAAAGCAAGTAAACTGTGGAAGTGGTGAAGCTGATCTGATGGATTCCTATTTGCATAATAATAACTTCTCTTCATCTTCTTCCTTGTCTTCTTCTTCTTCGTCTTCTAGGGCTTGTAATTGCAACAGTCTTATCAGACTTTCATTTGGAAACAAGCAGAAGAAAGACGGAATTGAAGGAACGGAATCTAAGAGAAACTACTACTATGATCACCAAGACTATGATTCGGAGTCGATGGGTAGAACCAGACCTCGTTACAACAACAATCACTACCCAAATAATAACTATCGTCACCGTGGGAATGCTGTTCGACCGTCTAAACCTCAAGACCAATCTCTTATGGTCACCACCACTTACAGGATACTCTGTCATGATGCTAAGGCCGGGGGAGTTATCGGCAAATCTGGTAGTATTATTAAGTCCATAAGGCAGCACACCGGCGCGTGGATCAACGTGCATGAGCTTGTTCCTGGTGATGAGGAGAGAATAATTGAGATATCCGACACTCGGCGGCGGGACCCGGAAGGTCGGATGCCGTCGTTCTCTCCGGCTCAAGAAGCACTTTTCTTGATTCATGAAAGGATTCTCGAGAGTGAAATGAGTCCTGGGTTTAATGGAATGGGGTATGGTCCTGAGGATGAGGAGGATGATTACGGTGGCGTTAGAGGAGGAGCTGGCGGTGGTGGTGGTGGCCGTGTGGCGACCAGGCTTGTTGTGTCTAGAATGCACGTTGGTTGTTTGCTTGGGAAGGGAGGAAAGATAATCGAGCAAATGAGGATGGAAACCAAGACCCAGATTAGGATTCTACCTAGAGATCACAATTTGCCTCGTTGCATTTCAATGTCGGAGGAGATTGTTCAGATTGTTGGAGATGCAAATGCCGTAAAGAAAGCTATAGCTATTGTTTCAGCACGCTTGAGAGAGAGTCAGCATCGTGACCGTAGTCATTTCCATGGGCGTCTACATTCACCGGAACGTATTTTCCCTCCTGATGATGATTATGTTCCACATAGCGCACGTCGATTATCAATGGATGGACGGCCATTTAGACCACGTATGTCTGCTTCTAATACAAGAGGCAATGACTATTCCAACCGTCAATCTAATTTTTTGGTGGAGCCTGGGGCTGCTCCTGTAAATGACAATATGATGCCCTTTTATGGTGAGGACCTTGTATTTAGAATATTATGCCCAATTGATAAGGTAGATAGTGTTATTGGAGAGTCTAATGGAATCATAGAATTACTTCGGAACGATGTTGGTGTGGATATCAAGGTTTCTGACCCTGTGACTGGTTCAAACGAACAGATTCTTATCATTTCCTCGGAGGAGGGTCCAGATGATGAGCTTTTTCCAGCACAGGAAGCTTTGTTACACATCCAAACTCGCATTGTTGATCTTGTTCCTGATAAGGATAACATCGTAACTACTAGGTTACTTGTACCATCAAGTGATATTGGATGTTTGGAGGGAAGAGATGGATCATTGTTAGAGATGAAGAGATTAACTGGTGCAAATGTACATATTGTGCCAAGAGAAGACCTTCCCATGTTTGTATCAGGCGCGGATGAGCTTGTACAGATCATAGGGGACATAAAAGCAGCTCGAGATGCACTTGTTGAGTTAACATCAAGATTACGGAATTACCTTTATAAGGAGCCGTTCCAAAAAGATGCAAGCCCTCCAGTCTCAGTACAAAGCACCATGGTCAGTTTAGGACTCGAGGAATCATCTTCAAATAATAATGCTGCAGCTCGTGAAGTTAATAGTGGAAACGATTCTTCAAGCACAGCCTTTCAAAATGTGCAACCTTTTGGAACAGCACAGCTTTTAAAGGAAACTGGAGCGTCGAGCAATGAAACTGGTATGCAGAATGAAAACGACCGACGTGAAGAATTGCCTACTGGGTTAAATAGGATCCCTGTGCCGCTTGTCACTCGGAGTACACTTGAAGTTGTGATACCAGAGCCTGCAGTCCCCAAGCTTATAACAAAATCAAAAAACAAGCTTGCTCAGATCAGTGAGTTGTCCGGAGCTAATGTTACGTTGGTAGAAGATAGACCAGATGTAACCCAGAAGATAATTCAAATATCAGGAACACCAGAGCAGGCTGAGAGAGCCCAGAGCTTGTTGCAAGGCTTTATTTTAAGCATATCATCCGAAAATGAAGATAGAACAGCGATGAGTACTCCAATCCCAACACTCTCCTTTGCTTCGCCTTTGTTGCCGCACAAGATTGAGGTGAAGCCCCGAATTTCTTCTGCCTTTAACTTTCATCCTCCATTTCAGGTGGTCGCTAGAAAACAGAGAAATGGTGAAGGTAGTGGTCGGCGAGTGTGGCGACGAAGAAAATTGGTGAACTACAGTTTACAACAGAGATGTGTAAACTTTGGCAAAAGGACACAAGCACCATGGGTAGTTAAAAACATTAGAGTATGTGGGGTTCTGGGTTCATGGTGTATACTGACGAAGAAAGATGACATGTCGATCTACAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGTAAGCTCATAACAATGGACATCGAAAGACTATTATTATCAGAGGACAACCGCTTCGATTTTGTGAATGAGGTCGCAGCTGAGGCTAAGGAATATGTCGAGAGCAACCGCGATGAATATGGGGGTTCCAAGAAAGCCATTCTTCACGTTCTTAGCAACCGAGTGAATGATGCAGGGTTTTATCGGCCAGATGCTTATGCAGAAGACGACCCATTTAAACCCGGACCTCACTATCTTAAAGAAGAATTTACTTGA 3537 44.02 MEMDVMLSATTRRKIRMACIQYGRNALQKIIKNSRLHPSDQMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKAAKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLPSPLSTCGEYEVPLRFPKSIPLPEGKIYWALKVKVRRAVDYYCIIGKREVKQVNCGSGEADLMDSYLHNNNFSSSSSLSSSSSSSRACNCNSLIRLSFGNKQKKDGIEGTESKRNYYYDHQDYDSESMGRTRPRYNNNHYPNNNYRHRGNAVRPSKPQDQSLMVTTTYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGRMPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGAGGGGGGRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDANAVKKAIAIVSARLRESQHRDRSHFHGRLHSPERIFPPDDDYVPHSARRLSMDGRPFRPRMSASNTRGNDYSNRQSNFLVEPGAAPVNDNMMPFYGEDLVFRILCPIDKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISSEEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVPSSDIGCLEGRDGSLLEMKRLTGANVHIVPREDLPMFVSGADELVQIIGDIKAARDALVELTSRLRNYLYKEPFQKDASPPVSVQSTMVSLGLEESSSNNNAAAREVNSGNDSSSTAFQNVQPFGTAQLLKETGASSNETGMQNENDRREELPTGLNRIPVPLVTRSTLEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSISSENEDRTAMSTPIPTLSFASPLLPHKIEVKPRISSAFNFHPPFQVVARKQRNGEGSGRRVWRRRKLVNYSLQQRCVNFGKRTQAPWVVKNIRVCGVLGSWCILTKKDDMSIYKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVAAEAKEYVESNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEDDPFKPGPHYLKEEFT 1178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10223755 10239381 + CrPI670011_05g010900.1 Cre05g1090 497603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1090 1178 MobiDBLite consensus disorder prediction 326 353 - -
Cre05g1090 1178 SMART kh_6 718 792 IPR004087 GO:0003676(InterPro)
Cre05g1090 1178 SMART kh_6 891 961 IPR004087 GO:0003676(InterPro)
Cre05g1090 1178 SMART kh_6 634 707 IPR004087 GO:0003676(InterPro)
Cre05g1090 1178 SMART kh_6 476 552 IPR004087 GO:0003676(InterPro)
Cre05g1090 1178 SMART kh_6 360 441 IPR004087 GO:0003676(InterPro)
Cre05g1090 1178 SUPERFAMILY L9 N-domain-like 58 110 IPR009027 -
Cre05g1090 1178 Gene3D K Homology domain, type 1 475 556 IPR036612 GO:0003723(InterPro)
Cre05g1090 1178 CDD KH-I_PEPPER_rpt1_like 635 703 - -
Cre05g1090 1178 Gene3D - 634 796 - -
Cre05g1090 1178 CDD KH-I_PEPPER_rpt1_like 361 434 - -
Cre05g1090 1178 FunFam 50S ribosomal protein L9 58 120 - -
Cre05g1090 1178 MobiDBLite consensus disorder prediction 821 844 - -
Cre05g1090 1178 Gene3D - 58 101 IPR036935 -
Cre05g1090 1178 Gene3D K Homology domain, type 1 891 962 IPR036612 GO:0003723(InterPro)
Cre05g1090 1178 MobiDBLite consensus disorder prediction 587 610 - -
Cre05g1090 1178 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 354 414 IPR036612 GO:0003723(InterPro)
Cre05g1090 1178 Pfam Ribosomal protein L9, N-terminal domain 59 95 IPR020070 -
Cre05g1090 1178 Gene3D - 128 232 IPR036791 -
Cre05g1090 1178 MobiDBLite consensus disorder prediction 319 353 - -
Cre05g1090 1178 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 628 691 IPR036612 GO:0003723(InterPro)
Cre05g1090 1178 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 479 558 IPR036612 GO:0003723(InterPro)
Cre05g1090 1178 ProSiteProfiles Type-1 KH domain profile. 477 547 - -
Cre05g1090 1178 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 872 962 - GO:0003729(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0010468(PANTHER)
Cre05g1090 1178 SUPERFAMILY Ribosomal protein L9 C-domain 129 216 IPR036791 -
Cre05g1090 1178 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 713 799 IPR036612 GO:0003723(InterPro)
Cre05g1090 1178 ProSiteProfiles Type-1 KH domain profile. 361 433 - -
Cre05g1090 1178 ProSiteProfiles Type-1 KH domain profile. 892 956 - -
Cre05g1090 1178 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 884 962 IPR036612 GO:0003723(InterPro)
Cre05g1090 1178 CDD KH-I_PEPPER_rpt2_like 480 552 - -
Cre05g1090 1178 Pfam KH domain 894 957 IPR004088 GO:0003723(InterPro)
Cre05g1090 1178 Pfam KH domain 638 688 IPR004088 GO:0003723(InterPro)
Cre05g1090 1178 Pfam KH domain 721 786 IPR004088 GO:0003723(InterPro)
Cre05g1090 1178 Pfam KH domain 363 412 IPR004088 GO:0003723(InterPro)
Cre05g1090 1178 Pfam KH domain 481 547 IPR004088 GO:0003723(InterPro)
Cre05g1090 1178 ProSiteProfiles Type-1 KH domain profile. 635 702 - -
Cre05g1090 1178 Gene3D K Homology domain, type 1 360 443 IPR036612 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1090 K21444 - - csv:101217605 1206.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1090 Cre-Chr5:10223755 Cre11g1915 Cre-Chr11:30922465 1.70E-24 dispersed
Cre05g1090 Cre-Chr5:10223755 Cre01g0647 Cre-Chr1:5898140 1.30E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1025 . . . . Bpe03g00230 . . . Cmo16g00045 . . . . . Sed07g0871 . Cpe14g00031 Bhi01g01505 Tan01g0081 Cmetu06g1355 . Hepe07g0050 Mch10g0048 . . . . . . . . Cone1ag0995 Cone5ag0699 . . . . . Cme06g01156 Blo07g00331 . . . . . . . . . . Cma16g00038 Cma18g01323 Car16g00038 Car18g01235 . . . . . . . . . Cla05g00979 Cam05g1071 . . . . Cre05g1090 . Csa03g01974 Chy06g01186 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007315 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 37