Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1092 ATGGGGAGGGCGGTGGTTTATGTTCTTATAATCACCGCCTTCGCCGCCTTCTTCCTATTTTCTCCGTCCAATTTGGAGGATCAGAAGCATCAAGAACTAACTCGTCGCCTAGGGTTCAAATTCCGAACCCTTACTTTTGATCCTCTGGTCGCAGAAATGGAAAAATTAGCAGAGGAACGTGAATTAGGAAGCCGAGAAAGCGCGATTGCGAAGGGAAATCATCAGGTTCCTCATGCTTACGGACATTACTACGATGAAGGGAGATTGAACATTTCGTTGAGGCTGCTCGTGTTGTTTCCTTTGCTGGATCATTCGCCAAAAGATGGAGGTATCAGTTACGAGGAGTTGAGCGATTGGATTACTGGGCAAGCCATTGAAAGATTGAATTACAGAACGCGCAAACAATTGGCGTTCTATGACAAGAATGGAGATGGCGGCATTTCATTCCACGAATATCTGCCGAAGTTCACAGAGGAAGATATTGCAAGAAATGAAACGGGGTATGGAGAAGCTGGATGGTGGAGTAAGCAATTCACAAATGCGGATGTTGACCAAAATGGCTTACTAAATTTTGATGAACTGAAAGATTTCTTGCACCCAGAAGATAGCAGCAATTACCGAATACAAAACTGGCTGTTGAGAGAGAAAATGAAGCGCATGGACCATGACAGAGATGGAAAGCTCAGTTTTGATGAATTTCTCCACCATGCATATGATATATACAAGAGCTATATCGAATTCGAAACTCAAGGCGAGGACGTACCAAGCGTCGAAGAGAAGTTTGACGAGCTTGATCTCGATGAGGACGAAGTATTGTCAGTGGAAGAATTAAGGCCATTGTTCCAGTATCTTCATCCTGGAGAAGTGTCTTATGCCCAACATTACACAAGTCATTTGATTAATGAGGCTGATGACAACAAAGATGGCTATTTAACACTTGATGAGATGCTTAATCATGAGTATGTTTTCTACAGCACAGTATATGAAAATAACAATGGCGATTATGAAGATGATTACCATGATGAACTTTGA 1032 42.34 MGRAVVYVLIITAFAAFFLFSPSNLEDQKHQELTRRLGFKFRTLTFDPLVAEMEKLAEERELGSRESAIAKGNHQVPHAYGHYYDEGRLNISLRLLVLFPLLDHSPKDGGISYEELSDWITGQAIERLNYRTRKQLAFYDKNGDGGISFHEYLPKFTEEDIARNETGYGEAGWWSKQFTNADVDQNGLLNFDELKDFLHPEDSSNYRIQNWLLREKMKRMDHDRDGKLSFDEFLHHAYDIYKSYIEFETQGEDVPSVEEKFDELDLDEDEVLSVEELRPLFQYLHPGEVSYAQHYTSHLINEADDNKDGYLTLDEMLNHEYVFYSTVYENNNGDYEDDYHDEL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10245492 10249360 - CrPI670011_05g010920.1 Cre05g1092 497605

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1092 343 SUPERFAMILY EF-hand 172 334 IPR011992 -
Cre05g1092 343 Gene3D - 93 154 - -
Cre05g1092 343 PANTHER RETICULOCALBIN 48 343 - GO:0005509(PANTHER)|GO:0005783(PANTHER)
Cre05g1092 343 Pfam EF hand 136 152 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 ProSitePatterns EF-hand calcium-binding domain. 221 233 IPR018247 -
Cre05g1092 343 ProSiteProfiles EF-hand calcium-binding domain profile. 169 204 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 SUPERFAMILY EF-hand 94 154 IPR011992 -
Cre05g1092 343 Gene3D - 155 236 - -
Cre05g1092 343 ProSiteProfiles EF-hand calcium-binding domain profile. 252 287 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 Gene3D - 237 321 - -
Cre05g1092 343 Pfam EF-hand domain pair 258 318 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 Pfam EF-hand domain pair 177 236 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 ProSitePatterns EF-hand calcium-binding domain. 182 194 IPR018247 -
Cre05g1092 343 ProSiteProfiles EF-hand calcium-binding domain profile. 213 243 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 SMART efh_1 131 159 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 SMART efh_1 212 240 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 SMART efh_1 256 284 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 SMART efh_1 295 323 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 SMART efh_1 173 201 IPR002048 GO:0005509(InterPro)
Cre05g1092 343 ProSitePatterns EF-hand calcium-binding domain. 304 316 IPR018247 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1092 K23901 - - csv:101207354 566.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1092 Cre-Chr5:10245492 Cre09g1729 Cre-Chr9:35572560 1.00E-54 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1018 . Blo15g00083 . . . Bpe07g01020 . . . . . . . . Sed07g2373 . . Bhi01g01509 Tan01g0073 Cmetu06g2632 . Hepe07g0046 Mch10g0046 . . . . . . . . Cone1ag0997 . . . . . . Cme06g01158 . . . . . . . Bma12g01216 . . . . . . Car18g01232 . . . . . . . . . Cla05g00982 Cam05g1073 Cec05g1080 Cco05g1072 Clacu05g1067 Cmu05g1018 Cre05g1092 . Csa03g01971 Chy06g01184 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012485 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29