Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1096 ATGTCGGACGCTTATTGGAGGTACACCGACTCACAGCAGCAGCCTCCGTCGTCGGTTCCTGCCGTCGTCGGCAAGCGCCCTCGCGTCGATTACGATACCACTGGTCTTCACGAGTTGCCCAACTATTACCCTCGTCAAGATGATAGACCAGTGCTCCAAGGAATTAAAAGTGTTGATTCCATCAATGAGTCCTATGAACGTTACCTACGCAGCTCGCAAATTTCATCTTATGGTGGACAGTCTGCTAGACCTGTTGGTGGGGGAGTTCCTGGTCATTCAATCAATGATCCACCTATATTGGGGATTGGGGGTGTGGTTTCAGGGGCTAATGTTAATGATAGAAGTACGAGCTTTGGAGGTGGGAGGCCTAACATACCCCTTCCACCTGATGCTTCTAATACACTATTTGTGGAAGGCTTGCCTTCCAGCTGTACACGGCGTGAAGTAGCTCACATATTCCGCCCTTTTGTTGGCTACAAAGAAGTGAGACTTGTTAACAAGGAATCCAGAAATCCTGGAAGAGATCCAGTGGTCCTTGGTTTTGTAGATTTTGTGAGTCCTGCCCATGCAGCCACGGCCATGGATGCCTTACAAGGGCTCTTAGATTCCAAGTTGTGTGGCTTGAAGAATTTGAGTTTGTCGATTCTATCCTGCATTCAGCCGGTAGGGAATCTGCTACTGCATATATCAGTCGAGCTCGATTTTGCAGGTTATAAATTTGATGAGTTTGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTTTCCTGGTGCAAGATTTTTCCTTTGGTCATTATTTTCGGCTAGTGAGAATTTCGACTCGACAATATCCAGACATGGAAAAATTGCCAACCGAAATCTGCCTGAAGATATTCTGTTTGTTGGATTCTCAGAACCTCGCAACCGCACTTCAAGCTATTCACTCTGCAACCTGCTGCTTGAAGTTTGCAGGAAGTGGAACTCCTTAGCTTCAGACAATATCTTATGGTCGAACTTATTCAAGGAGAGGTGGGGGGAAAACCATGCTGCATTTTATCACCCAGTCGGTTCAAAGTCGTGGAAGGATTCATATGAGGTGCAAGATCGATGTGATCGATTTGGACTGGGCCTAAGAATTATCCGAGAAGGGAATGACTACTACCTCATTCACCAAGGTGAAATCCAGAGGCACCTAGGATCAAGAAGACAAAAGAATGGACAGACGAGCTTTCTTCCTTTGAGTTCAAAAAGAGAGTTCCTGTCAGAAGGACTTCTCGAAGAAGACAAATCCTGTCGAGGAATTCTGGACAGGATCCTTTTCTTCATTGGAGACTTGGAAGTTGCTTCAACAGATGCAAAGCGCAGCAGACGAGTATGGCCTTCTGTTCAGCGTCTTTACCAAAGGAAGCTCCAAAAGATGGCTGCTTTTGCCTCATTGCCCCTAACTTCGTCTTCTTTACATCCTGTTGTCCAATTCTCACCTCTTGTATTCTCCTCAACAGTTGTATATGACCCAAGTTCCTATTGCCTCACAGTCAGATCAATCAGACATGGAAAGCAAAAATTTTCCCCTCAGACCAACCGAAGGAGCCTGATAATTCTTGGTGCAGCAACAAAACAAGCAAAAACACCAGCTGAAGAGGATTGGAAGGTGAAGAGGGAACTTCTGCTACAGAAAAGGGTAAGAAGTGTGGATGCTAATGAAGCTCTGCGCCTTCAGAAGGAAAACAAGTTTGTGATTCTTGATGTCAGGCCAGAAGCAGAATTCAAAGAGGGCCATCCACCAGGTGCCATTAATGTGCAAATCTACAGGCTTATAAAGGAGTGGACAGCATGGGACATAGCCAGGAGAGCTGCATTTGCATTTTTTGGCATCTTTTCGGGTACAGAAGAAAACCCAGAATTCTTGCAAAGTGTAGAATCTCAAATAGATAAAAATGCCAAAATAATAGTAGCATGTTCATCAGGTGGAACAATGAAACCTACCCAGAATCTTCCAGAAGGTCAACAATCAAGGTCATTGATAGCAGCCTACTTGTTGGTTCTGAATGGCTACTCCAACGTGTTTCACTTAGAAGGTGGTCTCTACAGTTGGTTCAAAGAAGGATTGCCTGTAGTTTCAGAAGAGTAA 2115 45.06 MSDAYWRYTDSQQQPPSSVPAVVGKRPRVDYDTTGLHELPNYYPRQDDRPVLQGIKSVDSINESYERYLRSSQISSYGGQSARPVGGGVPGHSINDPPILGIGGVVSGANVNDRSTSFGGGRPNIPLPPDASNTLFVEGLPSSCTRREVAHIFRPFVGYKEVRLVNKESRNPGRDPVVLGFVDFVSPAHAATAMDALQGLLDSKLCGLKNLSLSILSCIQPVGNLLLHISVELDFAGYKFDEFDRDSVNLRLQFARFPGARFFLWSLFSASENFDSTISRHGKIANRNLPEDILFVGFSEPRNRTSSYSLCNLLLEVCRKWNSLASDNILWSNLFKERWGENHAAFYHPVGSKSWKDSYEVQDRCDRFGLGLRIIREGNDYYLIHQGEIQRHLGSRRQKNGQTSFLPLSSKREFLSEGLLEEDKSCRGILDRILFFIGDLEVASTDAKRSRRVWPSVQRLYQRKLQKMAAFASLPLTSSSLHPVVQFSPLVFSSTVVYDPSSYCLTVRSIRHGKQKFSPQTNRRSLIILGAATKQAKTPAEEDWKVKRELLLQKRVRSVDANEALRLQKENKFVILDVRPEAEFKEGHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQSVESQIDKNAKIIVACSSGGTMKPTQNLPEGQQSRSLIAAYLLVLNGYSNVFHLEGGLYSWFKEGLPVVSEE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10274792 10286835 + CrPI670011_05g010960.1 Cre05g1096 497609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1096 704 SMART rrm1_1 134 209 IPR000504 GO:0003723(InterPro)
Cre05g1096 704 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 554 701 IPR036873 -
Cre05g1096 704 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 199 IPR000504 GO:0003723(InterPro)
Cre05g1096 704 ProSiteProfiles Rhodanese domain profile. 569 702 IPR001763 -
Cre05g1096 704 Pfam RNA recognition motif 135 199 IPR000504 GO:0003723(InterPro)
Cre05g1096 704 SUPERFAMILY RNA-binding domain, RBD 127 200 IPR035979 GO:0003676(InterPro)
Cre05g1096 704 CDD RRM_AtNSRA_like 130 256 - -
Cre05g1096 704 MobiDBLite consensus disorder prediction 1 19 - -
Cre05g1096 704 MobiDBLite consensus disorder prediction 1 24 - -
Cre05g1096 704 CDD RHOD 563 693 - -
Cre05g1096 704 FunFam Rhodanese-like domain-containing protein 14, chloroplastic 543 701 - -
Cre05g1096 704 Gene3D - 543 700 IPR036873 -
Cre05g1096 704 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 14, CHLOROPLASTIC-RELATED 475 703 IPR043186 GO:0009507(PANTHER)
Cre05g1096 704 SMART rhod_4 559 699 IPR001763 -
Cre05g1096 704 Pfam Rhodanese-like domain 561 695 IPR001763 -
Cre05g1096 704 Gene3D - 280 368 - -
Cre05g1096 704 Pfam F-box-like 288 336 IPR001810 GO:0005515(InterPro)
Cre05g1096 704 SUPERFAMILY F-box domain 305 363 IPR036047 GO:0005515(InterPro)
Cre05g1096 704 Gene3D - 129 213 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1096 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1096 Cre-Chr5:10274792 Cre08g0618 Cre-Chr8:19121135 1.10E-42 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g997 . Blo15g00078 . . . Bpe07g01026 . . Cmo16g00036 . . . . . Sed07g0876 . Cpe14g00024 Bhi01g01519 Tan01g0061 Cmetu06g0246 . Hepe07g0039 Mch10g0037 . . . . . . . . . . . Cone15ag0001 . . . Cme06g01169 . . Bda06g00795 . . . . Bma12g01221 . . . Cma16g00031 . Car16g00029 . . . . . . . . . . Cla05g00987 Cam05g1078 Cec05g1086 Cco05g1080 Clacu05g1072 Cmu05g1022 Cre05g1096 . Csa03g01965 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g1162 . 1231 1546 Sulfurtransferasese/Rhodanese AT1G79230 75.9 4.1e-146 514.6
Cre05g1162 . 1231 1495 Sulfurtransferasese/Rhodanese AT1G16460 73.6 2.2e-113 405.6
Cre01g1480 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 60.5 2.4e-82 302.8
Cre05g0169 . 457 917 Sulfurtransferasese/Rhodanese AT4G01050 52.7 4.2e-121 432.2
Cre01g1012 . 6 609 Sulfurtransferasese/Rhodanese AT1G09280 63.0 4.4e-223 771.2
Cre07g0911 . 85 437 Sulfurtransferasese/Rhodanese AT2G40760 75.6 1.7e-156 549.7
Cre10g1663 . 550 878 Sulfurtransferasese/Rhodanese AT1G17850 68.0 7.5e-138 487.6
Cre04g0158 . 30 228 Sulfurtransferasese/Rhodanese AT2G42220 74.9 1.7e-85 312.8
Cre10g2313 . 427 607 Sulfurtransferasese/Rhodanese AT3G08920 62.4 8.4e-63 237.3
Cre06g2606 . 1 292 Sulfurtransferasese/Rhodanese AT4G24750 67.1 1.7e-111 399.4
Cre02g2587 . 6 231 Sulfurtransferasese/Rhodanese AT5G19370 66.1 4.9e-85 311.6
Cre10g0729 . 113 454 Sulfurtransferasese/Rhodanese AT5G55130 73.4 6.0e-146 514.2
Cre05g1096 . 524 704 Sulfurtransferasese/Rhodanese AT4G27700 79.0 3.3e-78 288.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011827 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30