Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1103 ATGGATTCTGACCGCCATTTTCGTACCACAAGCAGCAACAGTACCAGTTCCACCGCCGCACCCTCTAGCGAGCTCTTCATTTGCTTCACTTCTCGCTTCTCTTCTTCTTCCTCCATGAAGATCTCCTCCAAGTCCATTCTCAGTCCCGGCCGTGCTCGTGAGCCCTCCCAAATCTCCCTCTCTACTTCCCTCAGCCGCCGTCTCAAATCCAGCGGTAGTCTCAAGGGCGGTCAAGCCTCCCCCATGTTTCCCACTGGCGGGAAGAAGCGAGGCTGTGCCTTTGACAATCCGGAACCCTCGTCGCCCAAGGTCACTTGCATTGGTCAGGTTAGGGTTAAGACGAAGAAGCAGGGGAAGAAAATGAGGGCTAGATCGCAGAAGCGAAGGAGTAATTCGGAGGCAAGCTTTCGGAGATCGGAGAGTGTTGTTCAATCGTCGCAGATGAATGGTAATGACCAGCAATTCTCGTCGCATCATAATCATCATCTTCTTCGTCAGAACAGTAACAACAATGGTGGAAACGGTTTCCAGCAGGAATGCTTGTCGCATCGGAACCAACGGTGGGTCCATTTGCCGTTTACGATTTGCGAGGCGCTTAGGGCTTTTGGTGCTGAACTCAACTGCTTCTTGCCGTGCCATTCGTCGTGTTCCAGCGATAGGGAGAATAATAAGGAATCCAAGCCGGCGGAGAGGTCGTCGGGGACCGAGAGTTCTTGCGGGACGGTGTTTGCGCGGTGGTTGGTGGCGGTTCAGGATGGAGACGGAAAGGGGAGGGAGATCGAGCTGGTGGTTGGAGACGAAGAACCTCGAACGGAGAAGGAAAACGGAAGCCAGAGACGGCATGTTTTTGAGGGCTTAGATTTCAAAGACGAGAATGAAGTTGTGGAGGAAGAGCAATCCAGGATCAGCATTTGCATTCCGCCAAAGAATGCTTTATTGCTAATGAGGTGCAGATCTGATCCGGTGAAAATGGCGGAACTCGCGAAACGATTCTGTGAATCTCCTGCGCCAAAAGTGGATGAAGAAGACGAGGAAGAAGAAGATGAAGACAATGAAGCGAAAAATAGACAAAGTGAAGTGAAAAGAGATGAATCTGTGCCACTGCCTGTATCTTCTTCCACTGTGACTGTAAGTAAGGAAGAGGAAGAAGAAGAAGAAGAAAGGAAAGTGGAGCTAATTGTGAAGCTTACAAACGAGAAAGAAATGAATGAAGAATCTGTTTCTGATGCAGAAAAAGAAAAGGAAGAAGCTAATGCGGTTTTAGAGGAAGAAGAACGAGAAGAAGAAGATAATGGAGAAGAAACCACAGAAATGGCCACAGAAAACGAAATCGATGAGCAGAAACCAGACATTACTGTGGTAAATCAGCATAATCAAGAACAGCCCGTGGAAGAAGAAGATAAAATCGTTCAAGATAATCAGCAAGAAACAATGGCGATCCCAATTCAAATTCCGATTCAAACCCACTGTGAACCCGAAATGGCTCAAGATGCAGAGAAGCCGGAATCGGTCGAAGAAGACGAATCCAAGCTATCCCATGGAAGCGAACAAGACCAGAAAACAGAAGAAGACGAAAACCTGAGAGAAGAAGAAGAAGAAGAAGAAGGCGAAAATGGCGAAAACCTCAGTTTACCATCATTATCAGTAGAGACAGAACCAGTTTTAGACGAAACCGAAACTGAAGTTTATTGGAATTGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAAGCGACGGATGAAGGAATCGGACCCGACAAGCAAAACGACGACGAATTGATGGGTCCAGAGGAGGACCAGTCAAAGGAGCGAGAAACTCCGCCGCCGGAGCCGGAGAGAAGAACACCAACAGAAACATCCGTTCTCCCAGATTGCTTGCTGTTAATGATGTACGAACCAAAGCTATCAATGGAGGTATCAAAGGAGACATGGGTTTGCAGCACAGACTTCATAAGGTGCGTTCCAACCAGGGAGAAGAAGCCGGCCGGCAGAGACCCACCGCCGCCTCCGCCGCCGAAGAAACGGGAAATAAAGCCGGTGGACACCACGCAGGCGGCAGTAGTACAGCCGGCGAGATGGTCGTGTTCGTTTCCAGCGGCGGCGGCTGCGGCGGCGATGATAGAACAGAAGCTAGTAAGGGCCAAGGGTTACGAGCCGTTTGTTCTTACTAGATGCAAGTCGGAGCCGATGAGATCGTCGGCTAAGCTGGCGCCAGACGCTTGCTTTTGGAAGGATCGCAAACTCGAGCCACACCGTCCGGCTACCTTCGGCGTCAGCGCGGCTGAAGTTGGATTTTGA 2307 49.63 MDSDRHFRTTSSNSTSSTAAPSSELFICFTSRFSSSSSMKISSKSILSPGRAREPSQISLSTSLSRRLKSSGSLKGGQASPMFPTGGKKRGCAFDNPEPSSPKVTCIGQVRVKTKKQGKKMRARSQKRRSNSEASFRRSESVVQSSQMNGNDQQFSSHHNHHLLRQNSNNNGGNGFQQECLSHRNQRWVHLPFTICEALRAFGAELNCFLPCHSSCSSDRENNKESKPAERSSGTESSCGTVFARWLVAVQDGDGKGREIELVVGDEEPRTEKENGSQRRHVFEGLDFKDENEVVEEEQSRISICIPPKNALLLMRCRSDPVKMAELAKRFCESPAPKVDEEDEEEEDEDNEAKNRQSEVKRDESVPLPVSSSTVTVSKEEEEEEEERKVELIVKLTNEKEMNEESVSDAEKEKEEANAVLEEEEREEEDNGEETTEMATENEIDEQKPDITVVNQHNQEQPVEEEDKIVQDNQQETMAIPIQIPIQTHCEPEMAQDAEKPESVEEDESKLSHGSEQDQKTEEDENLREEEEEEEGENGENLSLPSLSVETEPVLDETETEVYWNWEEEEEEEEEEEEEKATDEGIGPDKQNDDELMGPEEDQSKERETPPPEPERRTPTETSVLPDCLLLMMYEPKLSMEVSKETWVCSTDFIRCVPTREKKPAGRDPPPPPPPKKREIKPVDTTQAAVVQPARWSCSFPAAAAAAAMIEQKLVRAKGYEPFVLTRCKSEPMRSSAKLAPDACFWKDRKLEPHRPATFGVSAAEVGF 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10359963 10362269 + CrPI670011_05g011030.1 Cre05g1103 497616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1103 768 MobiDBLite consensus disorder prediction 1 21 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 334 624 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 388 419 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 554 582 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 523 539 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 35 178 - -
Cre05g1103 768 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 505 748 - -
Cre05g1103 768 Coils Coil 513 537 - -
Cre05g1103 768 Coils Coil 379 434 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 660 683 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 136 178 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 215 237 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 493 522 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 583 615 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 338 352 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 35 78 - -
Cre05g1103 768 MobiDBLite consensus disorder prediction 420 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1103 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g0977 Cre-Chr4:28390250 Cre05g1103 Cre-Chr5:10359963 1.90E-06 dispersed
Cre11g1956 Cre-Chr11:31369396 Cre05g1103 Cre-Chr5:10359963 4.70E-06 dispersed
Cre05g1103 Cre-Chr5:10359963 Cre10g2157 Cre-Chr10:36118987 5.00E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g160 . . . Bda09g00533 . . . . Cmo16g00440 Cmo04g00591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00777 . . Bpe01g00452 Bma07g01161 . . . . Cma04g00557 Cma16g00408 Car04g00527 . . Cpe01g00500 . . . . . . . Cla05g00994 Cam05g1085 Cec05g1093 Cco05g1087 Clacu05g1079 Cmu05g1029 Cre05g1103 . . Chy06g01170 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008790 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 34