Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1108 ATGCGATTGTCGTCGGAATCAGTTTCGTCGTCATTGAAGCAGAGTGGGAATCAGTCTGGGTCTAGGCTTAAGAAGAAGCACAAGAGGCTTGATGCCATATGCGAGAAGGAGTATAGTAGAAACCATGGCGATGTGAATGAGAATGTTAGTGGGTTGGGGACTGGGGAGGCTGACCTTGGGCTTCGACGGAGCAGCCGTGTTCGTCGGGCCCCAGTCTTGCTTGATGCTTCCCCTATGCCAAGGAAGAAGCGGCGGATGGTTCATGGGAATGGAACTTTGGGTGTTAAAACGAGTGCTAACACTCTGCCGCAGTTGAGAGATGATTTGAATGATGAGGCACAGGGGAATTGGAGATCGAGGTTGAGATCAAGGAACCGAAATTTGGGGATTAGAGTGGACAAAGGTGCTCGGGCGAGCAGGAAAAGGAAACTTTTTGATGAAATTATTAATGTGGAAGTAAGAAGTAGTGTAATGAGGATGGATTTGGATGAGGCAAAAGGAAAAATGGAATACGGGGAATCTATGGTTGGAAGGTCTAACAGATTGACGAGGAGGTTTGGAGTGACGAATGATCCAATTAAAACAGAAAAGGAGGTGAAGTCTCCTCAAATGAAGGATGATTGTTGCAGGGAAGACATTTTGGAAATCAATAATGAAGATACGGAGGAGGAGGAGGAAGAAGAAGAAGAAGGGGAGGAAGAAGAAGAAGAAGGAGAAGGAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGTGGTGGAGGGCAAAGAAGCCACGACTGCTAA 807 47.83 MRLSSESVSSSLKQSGNQSGSRLKKKHKRLDAICEKEYSRNHGDVNENVSGLGTGEADLGLRRSSRVRRAPVLLDASPMPRKKRRMVHGNGTLGVKTSANTLPQLRDDLNDEAQGNWRSRLRSRNRNLGIRVDKGARASRKRKLFDEIINVEVRSSVMRMDLDEAKGKMEYGESMVGRSNRLTRRFGVTNDPIKTEKEVKSPQMKDDCCREDILEINNEDTEEEEEEEEEGEEEEEEGEGEEEGGGGGGGGGGGGGGGGGGGQRSHDC 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10403956 10404762 - CrPI670011_05g011080.1 Cre05g1108 497621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1108 268 MobiDBLite consensus disorder prediction 190 215 - -
Cre05g1108 268 MobiDBLite consensus disorder prediction 187 268 - -
Cre05g1108 268 Coils Coil 211 239 - -
Cre05g1108 268 MobiDBLite consensus disorder prediction 1 28 - -
Cre05g1108 268 MobiDBLite consensus disorder prediction 216 243 - -
Cre05g1108 268 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1108 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1108 Cre-Chr5:10403956 Cre10g1646 Cre-Chr10:30692571 7.80E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015786 0 0 0 0 0 1 0 1 1 0 1 2 0 0 0 0 2 0 0 2 0 0 0 0 0 0 0 0 0 0 10