Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1114 ATGAAGGGAGATGGTGGAAGAGAGTGTTTGAGATGGAGGAACTTGCTGCTGCCACTCTTGCAAATACTTTGGCTAGTGTCACTGGCTTTGCTTTCATGCACATACCATATAAGAAATGGAGTATTCAACTATTATGAGGCACCTAAGGCAGCAGATCTCAAGACAGGACTGAGCGGAGCGCTTGAAACACTTTGCGGGCAAGCGTTTGGTAGGAAGTTTTATGGGAAGATGGGGTTGTATCTTCAAGGTTCTTGCATCTCATCATTCTTTTGTTCCATCATTGTATCAGTTTTGTGGATTTACACAGAACAGATTCTAGTCTTGCTCCATCAAGAACCAGAGATTTCAAGGATATCTGCAGTGTATATGAAGTTTCTCATCCCAGGATTATTTGCATATGGCTTACTACAGAACATCCTGAGGTTTCTCCAAACACAATCTGTTGTCATGCCTTTGGTTTTCTTCTCTGCCATCCCAATGTTCATCCACATACCTATTGCATATGGTCTCGTTCATGGGACACGTCTCGGTTTCAATGGAGCTCCATTGGCTGCTTCAATCTCATTATGGATGTCATGCCTGATTTTGGCTATTTATGTACTTAAAGCAAACAAGTTTGAGAAATCTTGGAAAGGCTTCTCATTAGAAGCTTTTAGCTACAGTCTTTCAAGCTTAAAACTAGCTATTCCATCAGCAGCAATGGTGTGTTTGGAGTATTGGGCGGTTGAGGTTATGGTTTTCTTAGCCGGGTTGATGCCGAACCCGGAAACAAGTACTTCACTGATAGCAATGTGTGACAACACACAAACCATTGCCTACATGATCACTTGTGGACTCAGTGCTGCAGCAAGCACAAGGGTCTCAAATGAATTGGGAGCAGGCAATTTTGACAAAGCCAAAACTGCCATGTTTGCAACTCTCAAGCTTTCTGTCCTCCTTCCTCTGCTAGTTGTTTTTGCACTTGCATTTGGACATTACACCTGGGCTAGCTTCTTCATCAACAGCATTACAATTATGGATGAGTTTTCTTCCATGGTCCCATTTCTCGCTATCTCGATAACGCTCGACTCTGTTCAAGGCGCCATATCAGGGGTGGCTAGAGGTTATGGTTGGCAGCACTTGGCTGTATACATAAACTTGTCCACATTCTACTTTGTCGGTGTAACGATATCGATCCTTCTCGGGTTTAAGCTTAGATTATATGCTAAGGGTTTATGGATCGGGTACATCTGCGGTCTCTCGTCACAAACCGGTTGTCTTCTTTTGGTCGCTTTATCTGCAAAATGGATTAAAATGAATCAATCTGATTATGAAGTAAAAGGCCAGCCAAGGTTTATCCGTTCTATATCCTCCTCTGCTCTTCGTTCAATCGCTCAAATGGCAATGGCTTCAGTTTTGGCCCTCAATGGAGTGAAATTGGCTACGACTTCTCAAGCTTATGTGGAAAGCAAGGCTGTAATCGACACCAAGGCTCTGTTATCGGAGCTCTCCCACCAATTCGACGGCCTTAGATGGGTCTCCGGCACCGGCGGCAGGATTGCGATCAAGGTTCACTACCACTCCATTCCCAAGAGACAAAAGCTAACCGCTATGTCGCCTTCTGGTGTTAAGGAGAGAATGGTACGTGAGGACACCTGCATGTTATCTTATGGTGGATCGATCTTATATTCACCACCTCCAAAACCATTTTCCCACAAACTCCCAAACTGTTTTGATAGTGGACGTCTTTTTATGAAGATGCGCAATGCTGGAGCTGCTATCCACAGTCGTGGTATGGAATCGTATCTTGTAACACAAAGGAACCATCATCAGGGTCGGATTAGGAGTATCAAAGGAATTTCAAGCAACATTTCTGTGAAGGCTGGGGATCAAGGTTTAGAAAATAAAAATGAACCATTGGCACGTTGCATAGTTCTTGATATCGAAGGGACTACTACTCCAATATCTTTTGTTACTGACGTCCTCTTTCCATATGCTCGGGATAATGTTGGAAAGCATTTGATTTTAACTTATGAAACTGCAGAAACTCAAGATGACATTAAGTTGTTGCGTTCACAAGTTGAAGAAGACTTGGAAAATGGAGTTGCTGGAGCTGTGCCTATTCCTCCTGATAATGCTGGGAAAGAGGAAGTCATTGCAGCATTGGTTGCTAATGTTGAAGCAATGATAAAAGCTGACCGCAAGATAACTGCCTTGAAACAATTGCAAGGTCACATATGGAGAACAGGATTTTCAGGCAATGAATTGGAGGGAGTAGTTTTTGATGACGTCCCAGAGGCTGTCGAGAGATGGCATGCTTCGGGCATTAAGGTCTACATATACTCGAGTGGCAGCAGGTTGGCACAAAGGCTTATATTTGGAAAGACTAATTATGGTGATCTAAGAAAATACCTGTCAGGATTCTTTGACACTGCTGTGGGGAACAAAAGAGAAATAAGCAGTTATGTTGAGATTTCAGAGTCTGTTGGAGTTGATACACCATCAGAGATATTGTTCGTCACAGATGTCTGTCAGGAAGCTGTAGCAGCAAAAGCAGCAGGGCTGCAGGTGGCAATCTCAATCCGACCAGGAAACGGTCCACTGCCTGATAATCACGGGTTTCAGACAATCACTTCCTTCTCAGAAATCTGA 2631 43.52 MKGDGGRECLRWRNLLLPLLQILWLVSLALLSCTYHIRNGVFNYYEAPKAADLKTGLSGALETLCGQAFGRKFYGKMGLYLQGSCISSFFCSIIVSVLWIYTEQILVLLHQEPEISRISAVYMKFLIPGLFAYGLLQNILRFLQTQSVVMPLVFFSAIPMFIHIPIAYGLVHGTRLGFNGAPLAASISLWMSCLILAIYVLKANKFEKSWKGFSLEAFSYSLSSLKLAIPSAAMVCLEYWAVEVMVFLAGLMPNPETSTSLIAMCDNTQTIAYMITCGLSAAASTRVSNELGAGNFDKAKTAMFATLKLSVLLPLLVVFALAFGHYTWASFFINSITIMDEFSSMVPFLAISITLDSVQGAISGVARGYGWQHLAVYINLSTFYFVGVTISILLGFKLRLYAKGLWIGYICGLSSQTGCLLLVALSAKWIKMNQSDYEVKGQPRFIRSISSSALRSIAQMAMASVLALNGVKLATTSQAYVESKAVIDTKALLSELSHQFDGLRWVSGTGGRIAIKVHYHSIPKRQKLTAMSPSGVKERMVREDTCMLSYGGSILYSPPPKPFSHKLPNCFDSGRLFMKMRNAGAAIHSRGMESYLVTQRNHHQGRIRSIKGISSNISVKAGDQGLENKNEPLARCIVLDIEGTTTPISFVTDVLFPYARDNVGKHLILTYETAETQDDIKLLRSQVEEDLENGVAGAVPIPPDNAGKEEVIAALVANVEAMIKADRKITALKQLQGHIWRTGFSGNELEGVVFDDVPEAVERWHASGIKVYIYSSGSRLAQRLIFGKTNYGDLRKYLSGFFDTAVGNKREISSYVEISESVGVDTPSEILFVTDVCQEAVAAKAAGLQVAISIRPGNGPLPDNHGFQTITSFSEI 876
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10471084 10483595 + CrPI670011_05g011140.1 Cre05g1114 497627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1114 876 Pfam haloacid dehalogenase-like hydrolase 635 847 - -
Cre05g1114 876 CDD HAD_EP 636 857 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cre05g1114 876 SUPERFAMILY HAD-like 635 876 IPR036412 -
Cre05g1114 876 Gene3D - 648 744 - -
Cre05g1114 876 PANTHER MULTIDRUG RESISTANCE PROTEIN 53 431 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cre05g1114 876 NCBIfam MATE family efflux transporter 55 406 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cre05g1114 876 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Cre05g1114 876 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 648 744 - -
Cre05g1114 876 SFLD Haloacid Dehalogenase 635 875 - -
Cre05g1114 876 CDD MATE_eukaryotic 55 432 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cre05g1114 876 Gene3D - 487 638 IPR036409 -
Cre05g1114 876 NCBIfam acireductone synthase 635 874 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cre05g1114 876 Gene3D - 745 876 IPR023214 -
Cre05g1114 876 FunFam Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 744 876 - -
Cre05g1114 876 SFLD enolase-phosphatase 635 875 IPR023943 GO:0000287(InterPro)|GO:0019509(InterPro)|GO:0043874(InterPro)
Cre05g1114 876 Pfam MatE 55 168 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cre05g1114 876 Pfam MatE 230 390 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1114 K03327 - - csv:101221712 691.034
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1114 Cre-Chr5:10471084 Cre11g2201 Cre-Chr11:33727738 1.20E-144 dispersed
Cre05g1114 Cre-Chr5:10471084 Cre05g2405 Cre-Chr5:35544801 1.10E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g196 . . . . Bpe09g00238 . . Bma13g00945 Cmo16g00434 . . . . . . Cpe06g00682 . . . . . . . . . . . . . . . . Cone9ag0179 . . Lsi04g02064 Csa04g02334 Chy07g00066 . . Blo10g00758 . . . . . . . . . . Cma16g00400 . Car16g00366 . . . . . . . . . Cla05g01005 Cam05g1094 Cec05g1104 Cco05g1097 Clacu05g1090 Cmu05g1041 Cre05g1114 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002536 1 3 1 2 1 1 2 1 1 2 2 2 2 2 2 2 1 3 1 2 2 2 2 2 2 2 2 4 3 2 57