Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1117 ATGGGTTGCGTTTGCTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGAGAGGGTGTCAAGTAAGACCTCGTCTGACCTGCGGGTGGCAAGAGTGACTTCATCATCGAGGGAAGAAGCTTTTCGTACTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACGTTGATTGACAAGCAGGTGAATGGGTCCGGTCGACTGCCAGGTGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGGTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCATATTGCTGCAGGGTGGCCGCCGTGGCTGGCTGCAGTTGCTGGCGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATACAGGGCTCGTGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTACGGTTTGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTTACATCTAGGATGTCTTGCAGCCTCTATCTTGTTTTCGAGTACATGGAACATGACTTGGCAGGACTTGCTTCACATCCTGGTGTGAAGTTTACAGAGGCGCAGGTCAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGCGTCTTGAAAATTGCTGACTTTGGTCTTGCAAGTTTTTTTGATATCCATCAAAATCAGCCACTGACTAGTCGGGTTGTTACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTACGGTACGGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAGTTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAACTGTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCAACAATATTTAAGCCCCAACAGCCTTATAGACGTTGTGTTGCAGACACATTTAAAGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGACATTACTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTTGCTCTTAAAAGCGAATTTTTTTCAACAAAGCCACTACCTTGTGATCCGTCAAGCTTGCCAAAGTATCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAAGGACACCGGCTCGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCTGTCCCTGCGCCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCAACTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCTATTGATCCACCTAGACCTTCACAAGGAGCAGAAAAAATGGATTCTCAGGTGCGTCATCCGAAGAAAGCCTCACATTCGGGGCCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACCCAGATGATCCTCCCAAAATCTCAACAGGGGCCGAAACTTTCGCAACTTCAGGACTAGTAGCAGCCAGAAGAAGTATGCTGGCTGAAGATTGTAGGGTAAAGTCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGCAGGTTTCCCGGTTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCGGACCAAAAGTTCTCAAATCACAGTATTGTAGGCTCACATGACAAAGAGAGGAGCAGCGCCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTATTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCATGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTACGGAAGGTTCAAGCTGATGGCAAACAGATGTCGACGAATTCATTATTCGTCTCTGGGAAGTCATCCTATGAAATATCGGGTTGTGGCTATATTTAG 2157 46.04 MGCVCCKPSAIEDSKESPRERVSSKTSSDLRVARVTSSSREEAFRTKDQYDGNDARVTLIDKQVNGSGRLPGENFERKREKMEHMGAQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNHGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQGLSNSKSRSEKFNPHPEEASGFPIDPPRPSQGAEKMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDPPKISTGAETFATSGLVAARRSMLAEDCRVKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERSSAKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMSTNSLFVSGKSSYEISGCGYI 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10515345 10521062 - CrPI670011_05g011170.1 Cre05g1117 497630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1117 718 MobiDBLite consensus disorder prediction 35 49 - -
Cre05g1117 718 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524(InterPro)
Cre05g1117 718 MobiDBLite consensus disorder prediction 1 49 - -
Cre05g1117 718 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
Cre05g1117 718 MobiDBLite consensus disorder prediction 444 562 - -
Cre05g1117 718 CDD STKc_CDK9_like 131 415 - -
Cre05g1117 718 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Cre05g1117 718 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Cre05g1117 718 PANTHER CELL DIVISION PROTEIN KINASE 130 415 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cre05g1117 718 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1117 718 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1117 718 MobiDBLite consensus disorder prediction 12 27 - -
Cre05g1117 718 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Cre05g1117 718 SMART serkin_6 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1117 718 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Cre05g1117 718 MobiDBLite consensus disorder prediction 444 471 - -
Cre05g1117 718 MobiDBLite consensus disorder prediction 480 496 - -
Cre05g1117 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2077 Cre-Chr2:34266371 Cre05g1117 Cre-Chr5:10515345 2.40E-174 dispersed
Cre05g0708 Cre-Chr5:6258340 Cre05g1117 Cre-Chr5:10515345 1.30E-182 dispersed
Cre05g1117 Cre-Chr5:10515345 Cre11g0557 Cre-Chr11:2596343 1.20E-193 dispersed
Cre05g1117 Cre-Chr5:10515345 Cre02g2078 Cre-Chr2:34274779 3.20E-207 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64143 PF00069 Pkinase 3.30E-69 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1117 - - - 0.0