Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1117 | ATGGGTTGCGTTTGCTGTAAGCCCTCTGCTATTGAAGATAGCAAGGAAAGTCCAAGGGAGAGGGTGTCAAGTAAGACCTCGTCTGACCTGCGGGTGGCAAGAGTGACTTCATCATCGAGGGAAGAAGCTTTTCGTACTAAAGATCAGTATGATGGTAATGATGCGAGAGTGACGTTGATTGACAAGCAGGTGAATGGGTCCGGTCGACTGCCAGGTGAGAATTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGGTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCATATTGCTGCAGGGTGGCCGCCGTGGCTGGCTGCAGTTGCTGGCGAGGCAATCAGAGGATGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGGACTTATAGTAATGTATACAGGGCTCGTGATCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTACGGTTTGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGACTTGATCATCCAAATGTAATAAAGCTGGAGGGTCTAGTTACATCTAGGATGTCTTGCAGCCTCTATCTTGTTTTCGAGTACATGGAACATGACTTGGCAGGACTTGCTTCACATCCTGGTGTGAAGTTTACAGAGGCGCAGGTCAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGTCATGGAGTTCTACATCGTGATATAAAGGGTTCCAACCTTTTAATTGACAATCATGGCGTCTTGAAAATTGCTGACTTTGGTCTTGCAAGTTTTTTTGATATCCATCAAAATCAGCCACTGACTAGTCGGGTTGTTACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACTTATTACGGTACGGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAGTTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAACTGTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCAACAATATTTAAGCCCCAACAGCCTTATAGACGTTGTGTTGCAGACACATTTAAAGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGACATTACTCTCTATAGATCCTGCAGATCGTGGCTCTGCTGCTCTTGCTCTTAAAAGCGAATTTTTTTCAACAAAGCCACTACCTTGTGATCCGTCAAGCTTGCCAAAGTATCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCAGTAGGAAGCAAAGGACACCGGCTCGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCTGTCCCTGCGCCTGATGCCAATGCTGAATTAGCCTCATCAATGCAGAAAAGACAAGGCCTGTCCAACTCAAAGAGCCGGAGTGAGAAGTTTAACCCACATCCAGAAGAAGCTTCTGGCTTTCCTATTGATCCACCTAGACCTTCACAAGGAGCAGAAAAAATGGATTCTCAGGTGCGTCATCCGAAGAAAGCCTCACATTCGGGGCCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCTAGTAAGAACCCAGATGATCCTCCCAAAATCTCAACAGGGGCCGAAACTTTCGCAACTTCAGGACTAGTAGCAGCCAGAAGAAGTATGCTGGCTGAAGATTGTAGGGTAAAGTCTGATTCTTCACAAGGAGAGGTTCAAAAGCTAATTGGCAGGTTTCCCGGTTCCTTCAAAGAAACCTCAGAGTCGTCAATGCTACCGGACCAAAAGTTCTCAAATCACAGTATTGTAGGCTCACATGACAAAGAGAGGAGCAGCGCCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTATTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCATGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTTGACAAGGCTAAGGTACGGAAGGTTCAAGCTGATGGCAAACAGATGTCGACGAATTCATTATTCGTCTCTGGGAAGTCATCCTATGAAATATCGGGTTGTGGCTATATTTAG | 2157 | 46.04 | MGCVCCKPSAIEDSKESPRERVSSKTSSDLRVARVTSSSREEAFRTKDQYDGNDARVTLIDKQVNGSGRLPGENFERKREKMEHMGAQHPSMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNHGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQGLSNSKSRSEKFNPHPEEASGFPIDPPRPSQGAEKMDSQVRHPKKASHSGPLAQRAAWAKASKNPDDPPKISTGAETFATSGLVAARRSMLAEDCRVKSDSSQGEVQKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERSSAKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKVRKVQADGKQMSTNSLFVSGKSSYEISGCGYI | 718 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10515345 | 10521062 | - | CrPI670011_05g011170.1 | Cre05g1117 | 497630 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1117 | 718 | MobiDBLite | consensus disorder prediction | 35 | 49 | - | - | |
Cre05g1117 | 718 | ProSitePatterns | Protein kinases ATP-binding region signature. | 137 | 160 | IPR017441 | GO:0005524(InterPro) | |
Cre05g1117 | 718 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
Cre05g1117 | 718 | FunFam | probable serine/threonine-protein kinase At1g54610 | 214 | 455 | - | - | |
Cre05g1117 | 718 | MobiDBLite | consensus disorder prediction | 444 | 562 | - | - | |
Cre05g1117 | 718 | CDD | STKc_CDK9_like | 131 | 415 | - | - | |
Cre05g1117 | 718 | Gene3D | Phosphorylase Kinase; domain 1 | 118 | 213 | - | - | |
Cre05g1117 | 718 | SUPERFAMILY | Protein kinase-like (PK-like) | 125 | 423 | IPR011009 | - | |
Cre05g1117 | 718 | PANTHER | CELL DIVISION PROTEIN KINASE | 130 | 415 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cre05g1117 | 718 | Pfam | Protein kinase domain | 131 | 415 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g1117 | 718 | ProSiteProfiles | Protein kinase domain profile. | 131 | 415 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g1117 | 718 | MobiDBLite | consensus disorder prediction | 12 | 27 | - | - | |
Cre05g1117 | 718 | FunFam | probable serine/threonine-protein kinase At1g54610 | 118 | 213 | - | - | |
Cre05g1117 | 718 | SMART | serkin_6 | 131 | 415 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cre05g1117 | 718 | Gene3D | Transferase(Phosphotransferase) domain 1 | 214 | 454 | - | - | |
Cre05g1117 | 718 | MobiDBLite | consensus disorder prediction | 444 | 471 | - | - | |
Cre05g1117 | 718 | MobiDBLite | consensus disorder prediction | 480 | 496 | - | - | |
Cre05g1117 | 718 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 251 | 263 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre02g2077 | Cre-Chr2:34266371 | Cre05g1117 | Cre-Chr5:10515345 | 2.40E-174 | dispersed | |
Cre05g0708 | Cre-Chr5:6258340 | Cre05g1117 | Cre-Chr5:10515345 | 1.30E-182 | dispersed | |
Cre05g1117 | Cre-Chr5:10515345 | Cre11g0557 | Cre-Chr11:2596343 | 1.20E-193 | dispersed | |
Cre05g1117 | Cre-Chr5:10515345 | Cre02g2078 | Cre-Chr2:34274779 | 3.20E-207 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64143 | PF00069 | Pkinase | 3.30E-69 | CL0016 | Cre | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1117 | - | - | - | 0.0 |