Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1127 ATGGTCTTTGTTTTGATCTTCTTCTCTCTCACTTGCTCTTTCTCACCTTCCTATGGATATGACTCATTGGACCCTTATGCTAACATTACCATCACATGGGATTTCTTGGTAGAGAATGGGGATACTTATGATGTGAGGGTTTCATTGTACAATTTCCAACTGTTTCGCCATGTGGAGTTGCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGAGGAGGTTATATGGAGTATGTGGGGAGCAGAGGCTACTCAGCAAGGAAATTGCTCCAAATACATAGGCAGAGAGCTTCCTCATTGTTGTGAGAAGAAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCTAATTGTTGTAAAGGAGGCGTGCTATCTTCCATGAGACAAGAGTCTGCCAACTATGGAGCTGCCTTCCAAATGAATGTTGGGAAGTCTTCTGGAAAGGATGTAGACAACAAAATGGCTGAAAATTTCACACTGGGGCTTCCTGGATATACTTGTAGTGAACCATTTCAAGTCCCTCCGACCAAGTTCAGTAAGGATGGCGGTCGCCGGTGGACACAAGTTCTAGAAACATGGAATGTGACCTGTGTTTACTCCCAATTTCAATCATCACCGACACCAAGGTGCTGCGTTTCATTGTCATCTTTCTACAACAGCACCATTGTCCCTTGCCCTCAGTGCAGCTGTGGTTGCCAAGGGCTAAAGGGAACAAAATGTGTCAAGTCAGGTGAAACTCCTTCAGTGTTGCAACTTCCACATGAACATTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCACATGTGCCCAATAAGGGTGCATTGGCACGTGAAACAGAGTTATACACAGTATTGGAGGGTAAAGATAACAATCACAAATCTAAACTTTGCTAAGAATTACTCTGAATGGAACTTAGTAGTGATGCATCCCAATTTGCGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCCCTCAATCAGTATGGTAACATCAATGACACAGGGATGTTTTGGGGGATTCACTTCTACAATGACTTGTTACTCACATCAGGAGAGAGAGGGAATGTCCAAACAGAAATTCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAGGGATGGGCATTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAATCTCACAGGGCCATGGCAGCCTCATTCATAGTTTTCTTCTTCTTGTTTCTCTCTGTATCATTATAA 1299 43.26 MVFVLIFFSLTCSFSPSYGYDSLDPYANITITWDFLVENGDTYDVRVSLYNFQLFRHVELPGWKLGWSWKGEEVIWSMWGAEATQQGNCSKYIGRELPHCCEKKPVIVDLMPGAPYKLQVANCCKGGVLSSMRQESANYGAAFQMNVGKSSGKDVDNKMAENFTLGLPGYTCSEPFQVPPTKFSKDGGRRWTQVLETWNVTCVYSQFQSSPTPRCCVSLSSFYNSTIVPCPQCSCGCQGLKGTKCVKSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSEWNLVVMHPNLRNITQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGERGNVQTEILLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKSHRAMAASFIVFFFLFLSVSL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10711693 10715101 + CrPI670011_05g011270.1 Cre05g1127 497640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1127 432 PIRSF COBRA 1 432 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cre05g1127 432 Pfam COBRA-like protein 43 205 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Cre05g1127 432 PANTHER PROTEIN COBRA 5 427 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1127 Cre-Chr5:10711693 Cre06g2414 Cre-Chr6:32022807 9.40E-138 dispersed
Cre05g1127 Cre-Chr5:10711693 Cre06g2413 Cre-Chr6:32019750 1.70E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1127 - - - 0.0