Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1128 ATGGGGAAAGGACCATTTTCTTTTCGCCGGAGCAGTAGTCGCCGCCGCCCTAAGAAGGCGGTTCAGTCGTCACCGTCCTTATCGCCACAGCCACCTCCGCAGATTAGCACCAGTTCTCCTCCCATTAACAATAATGGGAATGGATTGGTTGGTGGTGGGGGTGGTGGGGTGGTGGGAAAAGTGAAGAAGAAGGCCGGAGGAGCTAGGCTGTGGATGCGTCTCGACAGGTGGGGACAATCGGAGCTTTTAGAGTGGGACAAGAATGCTATAATCCGACGTGCTGCAATTCCGGCTAGGGATTTGAGGATTCTTGGTCCTGTTTTCTCACACTCATCTAGCATACTCGCCAGGGAAAAGGCCATGGTCGTTAATTTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTATTACTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTAGATCAGCTAAGGAAGCTACTTGCTAAGACGGGTTCATCTCAACTTGAAAATGATGGGAATGTTTCGAGAGGAGGAAAGTGGTTGCCAGTTTCAGAAGCTGCTGAAGGTGAGCAGTATGAGCTCCCATTTGAGTTTCAGGTTCTGGAAAATGCTTTGGAGGTTGTGTGCATGTACTTGGATTCCAGTGTGGCAGACCTTGAGCGAGACGCTTATCCAGTTCTGGATGAACTGGCTAGGAATGTCAGCACCAAGAATCTAGAACGTGTGAGGAGTTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAGAAGGTGCGGGATGAGATAGAACATCTATTAGATGATAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAATTTGATGCTTTGCCGGGAGGTGTGGCTTCCAACAGCGCAACTGCTATCGTTCCCCATCTTCGTCGACTTAGTTCCACCAGGAGTGGCAGTGTGGTGACCAGCAACCTTTTGGATGATAATGACATAGAGGACCTGGAGATGTTGCTCGAGGCATACTTTATGCAGTTGGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGACGACACCGAGGATTATGTCAATATTCAACTTGACAACCAAAGAAATGAACTCATTCAGTTTCAGTTAACCCTGACAATTGCTTCATTTGCCATAGCGGTTGAAACCTTAATCGCCGGGTTGTTTGGTATGAACATCCCTTGTACATTGTACGAGACGGATGGGGTGTTTGGGTACTTTGTCGGAGGTACTTCAGCAGGATGTTTATTGCTTTTCCTGCTTATTTTTGGCTTCGAAGATCTTCGTTCTTCAATCGCCACAAAGGAAAAGGAATTTTTCATATTTCTTACTATGGCAAATTCTAAAGGGTCATCCAACGTCAGAAGTTTTATGAGTTCTGGGAAACATGCACTACTCCCTCCTAAAAGTCCCTTTCCTAGTGTTTCTCCATCATATACGGAATATGTTCCTAATAGTGTAATCGGAGCAAAAGCTGTTCAGAGACCAAGAGATGGTAACAGCTACCATCAAAGAACTTCTTCCGAAAGTATTTTAATAGAGGAGCAGCCTTCTTGGCTTGATGATCTCCTCAATGAGCCAGAGACCCCTGTTCGCAGAGTTGGTCATCGACGTTCGTCGAGTGACTCCTTTGCATATACAGATGCTGCTAATGTAAATTTTGATAGTATCATGCAAGAAGAATTTAGATATGCAAATGCAATTCCTGGACACTCTTGGTTATCTCAAGAATTTGATCATCAGAGAGATGCAAGGCATGCTTCATTCTATACTGAAGCGAATATAGCAAAACAGAAGAATAGGGTGTGGGAGTCGTCTTTATCTACCATGAATAATCCCATTGCCCTTCATTCTCCTAGGGAGAACATTGGTATTCATACCTCAGGGCCACTAAACACGCCACAGGAAGCAGATGGTTTGCCTTCTACGGCAAGTGAGAAACAGGATTCAACTGAGTCTGGTTCACACGATCCAAAAGTCTCTTCTGACAGGAAAGATGCTTCTCATGGAAAATCATCTGTGTCTGATACAGAAAATAAACGCGCAAAACAGCAATTTGCTCAGCGTTCAAGGGTTCGGAAACTTCAATATATAGCTGAGCTTGAAAGGAAAGTACAAGCTTTGCAGGCAGAGGGCTCTGAAGTCTCAGCTGAGCTTGAATTTCTCAACCAACAAAATCTTATTCTTAGCATGGAAAACAAAGCCCTCAAGCAGCGGTTAGAGAATTTAGCTCAAGAGCAGCTAATTAAATACTTGGAGCAGGAAGTACTGGAGAGGGAGATTGGAAGGTTAAGAACTGTGCACCAGCAGCAACATCATCAGCAGCAACAACCACAACAGCTACGACCTTCTTCTAGTCATCGGCGTACTTCGAGCAAAGACCTTGACAATCAATTTGCTAACCTTTCTTTGAAGCAAAAGGATTCTGGTTCAAGTCGTGACCCAGTAACAGGTCCAGTGCGCAACGCCGCTGATCTCTTCCAGTCTTGGGTTGATCATCGGACGGGCAATGTTGATTTTGGGCTAAAATTGCCGCCGACCACTGATGTATTGGTTGCTGTCGGTCGGCGTTCTAGAATAGGAGTGAAGAAGAAAACTAAAAGAGTAGAAAAGAAACAAACTGGCTGTCCGATGTTGGTTTTTGGTCGGTTTCGGCCGGTTCGATTGGTTTTCGGTTTGTTTTGCTCACCTCTAGTCAAAGCCTTCGAAATAAGGTTCAAACTAATTGTTGTAGTGAACTTTTACCCATAG 2775 44.61 MGKGPFSFRRSSSRRRPKKAVQSSPSLSPQPPPQISTSSPPINNNGNGLVGGGGGGVVGKVKKKAGGARLWMRLDRWGQSELLEWDKNAIIRRAAIPARDLRILGPVFSHSSSILAREKAMVVNLEFIKAIVTAEEVLLLDPLRQEVIPFVDQLRKLLAKTGSSQLENDGNVSRGGKWLPVSEAAEGEQYELPFEFQVLENALEVVCMYLDSSVADLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQFDALPGGVASNSATAIVPHLRRLSSTRSGSVVTSNLLDDNDIEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAVETLIAGLFGMNIPCTLYETDGVFGYFVGGTSAGCLLLFLLIFGFEDLRSSIATKEKEFFIFLTMANSKGSSNVRSFMSSGKHALLPPKSPFPSVSPSYTEYVPNSVIGAKAVQRPRDGNSYHQRTSSESILIEEQPSWLDDLLNEPETPVRRVGHRRSSSDSFAYTDAANVNFDSIMQEEFRYANAIPGHSWLSQEFDHQRDARHASFYTEANIAKQKNRVWESSLSTMNNPIALHSPRENIGIHTSGPLNTPQEADGLPSTASEKQDSTESGSHDPKVSSDRKDASHGKSSVSDTENKRAKQQFAQRSRVRKLQYIAELERKVQALQAEGSEVSAELEFLNQQNLILSMENKALKQRLENLAQEQLIKYLEQEVLEREIGRLRTVHQQQHHQQQQPQQLRPSSSHRRTSSKDLDNQFANLSLKQKDSGSSRDPVTGPVRNAADLFQSWVDHRTGNVDFGLKLPPTTDVLVAVGRRSRIGVKKKTKRVEKKQTGCPMLVFGRFRPVRLVFGLFCSPLVKAFEIRFKLIVVVNFYP 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10719974 10741890 - CrPI670011_05g011280.1 Cre05g1128 497641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1128 924 Gene3D - 59 142 - -
Cre05g1128 924 FunFam Magnesium transporter MRS2-1 59 142 - -
Cre05g1128 924 Pfam Magnesium transporter MRS2-like 84 286 - -
Cre05g1128 924 Coils Coil 699 754 - -
Cre05g1128 924 Pfam CorA-like Mg2+ transporter protein 329 431 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
Cre05g1128 924 Coils Coil 240 274 - -
Cre05g1128 924 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 461 813 IPR044797 -
Cre05g1128 924 MobiDBLite consensus disorder prediction 633 657 - -
Cre05g1128 924 MobiDBLite consensus disorder prediction 776 794 - -
Cre05g1128 924 MobiDBLite consensus disorder prediction 774 801 - -
Cre05g1128 924 MobiDBLite consensus disorder prediction 627 697 - -
Cre05g1128 924 CDD bZIP_plant_RF2 688 734 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1128 924 CDD Mrs2_Mfm1p-like 71 423 IPR039204 -
Cre05g1128 924 SMART brlzneu 684 743 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre05g1128 924 MobiDBLite consensus disorder prediction 658 693 - -
Cre05g1128 924 Gene3D Magnesium transport protein CorA, transmembrane region 148 373 - -
Cre05g1128 924 MobiDBLite consensus disorder prediction 1 55 - -
Cre05g1128 924 SUPERFAMILY Leucine zipper domain 695 737 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1128 K16075 - - csv:101203496 707.212
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0369 Cre-Chr2:810395 Cre05g1128 Cre-Chr5:10719974 6.70E-199 dispersed
Cre05g1128 Cre-Chr5:10719974 Cre11g1774 Cre-Chr11:29357109 2.20E-99 dispersed
Cre05g1128 Cre-Chr5:10719974 Cre06g1415 Cre-Chr6:8444609 2.40E-82 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre10g1438 . 82 486 MRS2 Gene Family AT1G16010 86.4 8.3e-190 660.2
Cre08g0982 . 150 506 MRS2 Gene Family AT1G16010 52.0 1.0e-99 360.9
Cre06g1415 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.8e-156 549.3
Cre07g0431 . 708 1080 MRS2 Gene Family AT5G64560 68.5 4.4e-131 464.9
Cre02g1047 . 14 495 MRS2 Gene Family AT3G19640 64.4 1.1e-155 547.0
Cre05g1128 . 59 433 MRS2 Gene Family AT3G58970 69.6 6.8e-136 481.1
Cre02g0369 . 59 416 MRS2 Gene Family AT3G58970 71.5 9.2e-133 470.7
Cre08g0982 . 144 506 MRS2 Gene Family AT2G03620 67.5 1.7e-128 456.4
Cre10g1438 . 79 486 MRS2 Gene Family AT2G03620 54.9 2.5e-111 399.4
Cre06g1415 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.1e-127 453.4
Cre07g0431 . 708 1042 MRS2 Gene Family AT5G09690 63.4 5.8e-108 387.9
Cre10g1438 . 83 422 MRS2 Gene Family AT5G09690 50.6 8.1e-78 287.7
Cre06g1415 . 23 281 MRS2 Gene Family AT5G09720 69.1 8.0e-88 320.9
Cre07g0431 . 744 1002 MRS2 Gene Family AT5G09720 61.3 1.2e-75 280.4
Cre10g1438 . 82 486 MRS2 Gene Family AT1G80900 84.7 3.1e-184 641.7
Cre08g0982 . 151 506 MRS2 Gene Family AT1G80900 54.3 8.8e-99 357.8
Cre01g1187 . 16 436 MRS2 Gene Family AT5G22830 68.6 5.7e-149 524.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47