Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g1142 | ATGGACATGAATCTCCCCAACTGGCCGGCAGAGAAAAATGGGGAAGAGAAGAAGAAGGAAGATCAGAAGCAAGGAAACGAAGATGACGACGACAACGATAGCGATAGCGACATGCCGTCGTCGTTGAGCCTTAGAGAGCTTTCTAAGGTTATACTTCCACCTTTGGGAGTTTCAAGCTTTACTGATGACAATAAAGTCCATTCCAATAGATGGATCATCTCCCCCATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTACCCATTGGAAGTGGCGTTTATGGACGCAATTCCCAAGCGCCAATTATTAATTGCAGACAGTATTGTCGATCTTTTCTTCGCCATTGATATCTTCTTCACCTTCTTCGTTGCTTACATTGATCATCACACTCAGCTTCTCGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTAGCATCAACAATCCCATTTGAGACACTGGCCTATCTGTCCACAGGCAAATATGATCGTTGTCTCCCTTTTGCCCTCCTAGGATTGCTCAGATTTTGGCGATTGCGACGTGTCAAGCAATTTTTTACCAGGCTTGAGAAGGACATTAGATTCAGCTACTTTTGGGTTCGATGTGCTAGGCTCCTATCTGTCACTTTATTTTATGTCCATTGTGCCGGATGCCTCTACTACTTGTTGGCTGATCGATATCCACATGAAGGGAAGACCTGGATCGCAACCTTATTTCCAAATTTCAAAGAGATTAGCCTTGGAGTGAGATATACTTCAGCCATGTATTGGTCTATCACCACAATGACCACTGTTGGTTATGGTGATCTTCATGCTGTGAACACCGCGGAGATGATCTTTATCATTTTCTACATGCTCTTCAATCTCGGGCTAACTGCTTACTTGATCGGTAACATGACAAACTTAGTCGTTGAAGGAACTCGCCGCACAATGGAATTTAGAAACAGCATCGAAATGGCTTCAAATTTTGTTAACCGAAATCGCCTGCCTTCGAGGGTGAAGGAACACATATTGGCATACATGTGCTTGAGATTCAAGGCTGAGAGCCTAAACCAACAACAGCTGATTGAACAGCTTCCAAAGTCAATTTGCAAAAGCATCTGTCAGCAATTGTTTTTGCCGACCGTGGAGAAAGTCTACCTCTTCAAGGGCGTCTCAAAGGAAACACTTGTGGTGCTGGTAGCGAAGATGAAAGCTGAGTATATACCGCCTAAGGAGGACGTGATAATACAAAACGACACTCCTGATGAAGTTTATATCATTGTGTCTGGGGAAATTGAAATTATTGACTGTGAGATGGATGTGGAACGGATTGTTGGGACATTACAGTGTGGCAGTATGTTTGGGGAAGTAGGAGCACTTTGTTGCAAAAACCAAAATTTTACATACAGAACCAGAACTCTTTCACAGCTCTTGAAGCTGAAAACAAGTGTACTACAAGAAGCTATGCATATCAAACAAGCAGACAGTATGATCATTGTCAAGAATTTCCTTCAGGAAAGGGAGCTCAGCCACAAAATCACCATAGAAGGTTCGCCCGAAAAAGAGGTGCCAACGTTGATTGAAGAAAAGGATCAAAGTTTCAATTGGAAACACTCAATTGAATTAGATTTTGCTAGAGTGAACATATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGATGATCCTGGAAAGCTGATCAGACTGCCACATTCAATGGAGGAGCTCAAAAAAATTGCAGGTGAAAAGTTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGATTCTATTGATGTGATAAGGGATAATGATAAGCTTTTTTTTTTCATAGTTGCAGATGATAAATGCCTGTAA | 1920 | 42.14 | MDMNLPNWPAEKNGEEKKKEDQKQGNEDDDDNDSDSDMPSSLSLRELSKVILPPLGVSSFTDDNKVHSNRWIISPMSSRYRWWQSFMVVLVAYSVWVYPLEVAFMDAIPKRQLLIADSIVDLFFAIDIFFTFFVAYIDHHTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETLAYLSTGKYDRCLPFALLGLLRFWRLRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFYVHCAGCLYYLLADRYPHEGKTWIATLFPNFKEISLGVRYTSAMYWSITTMTTVGYGDLHAVNTAEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEMASNFVNRNRLPSRVKEHILAYMCLRFKAESLNQQQLIEQLPKSICKSICQQLFLPTVEKVYLFKGVSKETLVVLVAKMKAEYIPPKEDVIIQNDTPDEVYIIVSGEIEIIDCEMDVERIVGTLQCGSMFGEVGALCCKNQNFTYRTRTLSQLLKLKTSVLQEAMHIKQADSMIIVKNFLQERELSHKITIEGSPEKEVPTLIEEKDQSFNWKHSIELDFARVNIYKGHPVARKQASCDDPGKLIRLPHSMEELKKIAGEKFGFDARNAVLTNEEGSEIDSIDVIRDNDKLFFFIVADDKCL | 639 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10885745 | 10892950 | - | CrPI670011_05g011420.1 | Cre05g1142 | 497655 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g1142 | 639 | SUPERFAMILY | Voltage-gated potassium channels | 75 | 323 | - | - | |
| Cre05g1142 | 639 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
| Cre05g1142 | 639 | Gene3D | Jelly Rolls | 336 | 536 | IPR014710 | - | |
| Cre05g1142 | 639 | SUPERFAMILY | cAMP-binding domain-like | 327 | 517 | IPR018490 | - | |
| Cre05g1142 | 639 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 400 | 519 | IPR000595 | - | |
| Cre05g1142 | 639 | SMART | cnmp_10 | 400 | 517 | IPR000595 | - | |
| Cre05g1142 | 639 | FunFam | Potassium channel KAT2 | 388 | 523 | - | - | |
| Cre05g1142 | 639 | ProSiteProfiles | KHA domain profile. | 559 | 639 | IPR021789 | - | |
| Cre05g1142 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 117 | 127 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cre05g1142 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 270 | 287 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cre05g1142 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 296 | 307 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cre05g1142 | 639 | PRINTS | EAG/ELK/ERG potassium channel family signature | 314 | 323 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Cre05g1142 | 639 | PANTHER | POTASSIUM CHANNEL AKT1 | 27 | 543 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| Cre05g1142 | 639 | Pfam | Cyclic nucleotide-binding domain | 420 | 502 | IPR000595 | - | |
| Cre05g1142 | 639 | CDD | CAP_ED | 400 | 503 | IPR000595 | - | |
| Cre05g1142 | 639 | Gene3D | - | 82 | 323 | - | - | |
| Cre05g1142 | 639 | Pfam | KHA, dimerisation domain of potassium ion channel | 559 | 630 | IPR021789 | - | |
| Cre05g1142 | 639 | Pfam | Ion transport protein | 80 | 329 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cre05g1142 | 639 | FunFam | Potassium channel KAT3 | 82 | 324 | - | - | |
| Cre05g1142 | 639 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g1142 | Cre-Chr5:10885745 | Cre05g1894 | Cre-Chr5:31088506 | 3.00E-132 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g1142 | K21867 | - | csv:101205212 | 1136.32 |