Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1165 ATGGAGATTGATCTATCACTCAAAATAGATCATCACAAGGAAGAAATATTCAAACAACAAAAAGATCTTCAACAACAACAACAACAAATAATTGGAACAGTTGATGTTCTTGCAGCTTCTACCTCTGCTTTCAAACTGTTTTTGCCACACAACATTAATGTAGGAGGAGAGATTTCAGAGTTACAAATGGAAATGGATCGTATGAAGGAAGAGAACAAAGTGTTGAGAAAAGCTGTGGAACAAACAATGAAAGATTATTATGATCTTGAAATGAAAATTGGTATTATTCAACAAAACAATAACCTCAACAATAAGGACTCTCACAACTTGCTATCATTCCATGAAAATGAGAACAAGAGGCATGAAGAACCAACAAAACAAGACCTCGAACTCGGAGAAATGGCGAAGAAGAAGAGACGAGTTCGGTCGCCATCGAAGGAGGACGAAATGAGGGAGAGCGAACTAGGGTTATCATTAGGGCTCCATACAAAGAACAATGATTTGGATCAAGAAGATAATCATAGGGAATTATTACAAGAAGAAAGAAGAGAAAAGAAGAAGGAAGATTCAATAATGTCCAACTTCAACTCAATCCAAAACAAGCCACAAAGGCCTGAATTGCAAGCAATGGCACCCCCACAAAACAGAAAAGCTAGGGTTTCTGTGAGAGCAAGATGTGAATCTGCCACTATGAACGATGGTTGCCAATGGAGGAAATATGGTCAAAAAATTGCGAAGGGAAATCCATGCCCTCGAGCCTATTATCGTTGCACGGTTGCACCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGTTTAGAAGACATGTCAATTCTTATAACAACGTACGAAGGAACACATAATCATCCACTTCCTGTTGGAGCCACAGCCATGGCTTCCACAGCTTCGGCAGCAGCTTCCTTTATGCTCTTAGACTCCACTAATACTACTAATAATCTTTCTTCTCTTCCAAACCCTCAAAACCCTAATTTTCTAAACCCTCAAAACCCTAATATTCTAAACTCCTCTTCCTATTCTCCAACTAATTTCCTCCAAACTCAAAACCCTAATCAACCCTCAACCAATACATTTTACACTCCATTAATCCCCACATCTTCAACCTCAAACTTCCCCCAACCCTCCAATTGGATCAATACCAACCCTACTTCCTTTTACCATACCAATTTTCCCCTTCACGGCCGCTCCTTGAGACCAGCCGACGATAATAAGCCACCGTTCACACCTGAGAGTGTGTCTGCTATTGCTTCTGACCCTAAGTTTCGAGTCGCTGTTGCAGCTGCCATTTCTTCGCTCATTAACAAAGAGAATAACAACACAACAACGTCAAATTCTCCTATCGAAGATTCTTCTTCTTTCGGTCCAAGTAAGGATGGGAAAGGCAGCAGTGGCGGCGGTGAGAAATGGGTTGTTGAGTCCCTCTCATCAAACGGTAATTAA 1458 40.81 MEIDLSLKIDHHKEEIFKQQKDLQQQQQQIIGTVDVLAASTSAFKLFLPHNINVGGEISELQMEMDRMKEENKVLRKAVEQTMKDYYDLEMKIGIIQQNNNLNNKDSHNLLSFHENENKRHEEPTKQDLELGEMAKKKRRVRSPSKEDEMRESELGLSLGLHTKNNDLDQEDNHRELLQEERREKKKEDSIMSNFNSIQNKPQRPELQAMAPPQNRKARVSVRARCESATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSTNTTNNLSSLPNPQNPNFLNPQNPNILNSSSYSPTNFLQTQNPNQPSTNTFYTPLIPTSSTSNFPQPSNWINTNPTSFYHTNFPLHGRSLRPADDNKPPFTPESVSAIASDPKFRVAVAAAISSLINKENNNTTTSNSPIEDSSSFGPSKDGKGSSGGGEKWVVESLSSNGN 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11221369 11226311 + CrPI670011_05g011650.1 Cre05g1165 497678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1165 485 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 446 IPR044810 GO:0003700(InterPro)
Cre05g1165 485 Pfam WRKY DNA -binding domain 232 290 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1165 485 MobiDBLite consensus disorder prediction 115 155 - -
Cre05g1165 485 MobiDBLite consensus disorder prediction 442 464 - -
Cre05g1165 485 MobiDBLite consensus disorder prediction 196 219 - -
Cre05g1165 485 Coils Coil 161 188 - -
Cre05g1165 485 MobiDBLite consensus disorder prediction 115 172 - -
Cre05g1165 485 ProSiteProfiles WRKY domain profile. 226 292 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1165 485 SUPERFAMILY WRKY DNA-binding domain 224 292 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1165 485 MobiDBLite consensus disorder prediction 442 485 - -
Cre05g1165 485 SMART WRKY_cls 231 291 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1165 485 FunFam probable WRKY transcription factor 31 216 293 - -
Cre05g1165 485 Gene3D WRKY domain 216 293 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1165 485 Coils Coil 51 85 - -
Cre05g1165 485 Coils Coil 9 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1330 Cre-Chr1:26503503 Cre05g1165 Cre-Chr5:11221369 2.50E-40 dispersed
Cre05g1165 Cre-Chr5:11221369 Cre10g1443 Cre-Chr10:28210514 3.90E-23 dispersed
Cre05g1165 Cre-Chr5:11221369 Cre06g2502 Cre-Chr6:32726927 5.80E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53679 PF03106 WRKY 1.90E-24 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1165 - - - 0.0