Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1169 | ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACACGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGAAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAATAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAATTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA | 1287 | 46.78 | MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPHDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE | 428 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11269851 | 11272107 | + | CrPI670011_05g011690.1 | Cre05g1169 | 497682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1169 | 428 | Pfam | Tub family | 115 | 423 | IPR000007 | - | |
Cre05g1169 | 428 | SUPERFAMILY | F-box domain | 45 | 97 | IPR036047 | GO:0005515(InterPro) | |
Cre05g1169 | 428 | SUPERFAMILY | Tubby C-terminal domain-like | 103 | 428 | IPR025659 | - | |
Cre05g1169 | 428 | ProSitePatterns | Tub family signature 2. | 413 | 428 | IPR018066 | - | |
Cre05g1169 | 428 | FunFam | Tubby-like F-box protein | 111 | 428 | - | - | |
Cre05g1169 | 428 | Pfam | F-box-like | 54 | 97 | IPR001810 | GO:0005515(InterPro) | |
Cre05g1169 | 428 | PRINTS | Tubby superfamily signature | 170 | 186 | IPR000007 | - | |
Cre05g1169 | 428 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Cre05g1169 | 428 | PRINTS | Tubby superfamily signature | 406 | 428 | IPR000007 | - | |
Cre05g1169 | 428 | PRINTS | Tubby superfamily signature | 350 | 366 | IPR000007 | - | |
Cre05g1169 | 428 | PRINTS | Tubby superfamily signature | 332 | 349 | IPR000007 | - | |
Cre05g1169 | 428 | PRINTS | Tubby superfamily signature | 385 | 404 | IPR000007 | - | |
Cre05g1169 | 428 | PRINTS | Tubby superfamily signature | 186 | 210 | IPR000007 | - | |
Cre05g1169 | 428 | CDD | F-box_AtTLP-like | 54 | 98 | - | - | |
Cre05g1169 | 428 | Gene3D | Tubby Protein; Chain A | 113 | 422 | IPR025659 | - | |
Cre05g1169 | 428 | Gene3D | - | 49 | 101 | - | - | |
Cre05g1169 | 428 | PANTHER | TUBBY-RELATED | 44 | 427 | - | - | |
Cre05g1169 | 428 | ProSitePatterns | Tub family signature 1. | 350 | 363 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre04g1574 | Cre-Chr4:34300866 | Cre05g1169 | Cre-Chr5:11269851 | 7.90E-118 | dispersed | |
Cre05g1169 | Cre-Chr5:11269851 | Cre08g0325 | Cre-Chr8:10012404 | 1.10E-191 | dispersed | |
Cre05g1169 | Cre-Chr5:11269851 | Cre05g2058 | Cre-Chr5:32570904 | 3.70E-118 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53680 | PF01167 | Tub | 2.30E-116 | CL0395 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1169 | K19600 | - | csv:101216314 | 865.914 |