Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1169 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACACGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGAAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAATAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAATTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 46.78 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPHDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11269851 11272107 + CrPI670011_05g011690.1 Cre05g1169 497682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1169 428 Pfam Tub family 115 423 IPR000007 -
Cre05g1169 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Cre05g1169 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cre05g1169 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cre05g1169 428 FunFam Tubby-like F-box protein 111 428 - -
Cre05g1169 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Cre05g1169 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cre05g1169 428 CDD F-box_AtTLP-like 54 98 - -
Cre05g1169 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Cre05g1169 428 Gene3D - 49 101 - -
Cre05g1169 428 PANTHER TUBBY-RELATED 44 427 - -
Cre05g1169 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1574 Cre-Chr4:34300866 Cre05g1169 Cre-Chr5:11269851 7.90E-118 dispersed
Cre05g1169 Cre-Chr5:11269851 Cre08g0325 Cre-Chr8:10012404 1.10E-191 dispersed
Cre05g1169 Cre-Chr5:11269851 Cre05g2058 Cre-Chr5:32570904 3.70E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53680 PF01167 Tub 2.30E-116 CL0395 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1169 K19600 - csv:101216314 865.914