Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1169 ATGTCATTCCGAAGCATTGTTCGCGATGTGAGGGATAGTATTGGGAGCTTATCTAGACGGGGTTTCGAGGTCAAGTTGAGTGGTCATCATAGAGGAAAGTCCAATGCATCGTCGCTGAATGATCTACATGACCAGCCTCCTGTTGTTCAGAATGGCTGCTGGGCTAGTCTTCCACCCGAGCTGTTGTATGATGTCATTCGAAGACTTGAAGAGAGTGAAAACACATGGCCTTCACGAAAGAATGTCGTTGCCTGTGCTGCAGTATGTCGTTCTTGGAGAATTATGTGCATGGAGATAGTTAAAGGCCCAGAAATTTGTGGGAAGCTTACCTTCCCAGTGTCACTGAAGCAGCCAGGACCACACGATGGATCTGTACAGTGCTTCATTAAGAGGGATAAATCCAACCTAACATACCACCTCTACTTGTGTCTTAGCCCTGCTCTGCTGGTTGAAAATGGAAAATTTCTTCTCTCTGCAAAGCGTACACGAAGAACTACTAGCACAGAGTATATTATCTCGATGGATGCAGAAAACATTTCGAGATCAAGTAGCTCTTACATCGGAAAACTGAGGTCGAACTTTCTTGGAACAAAATTCATTGTCTATGATACTCAACCTCCATACACCGCTGCCCCGCTCCCTCCTCCCGGGAAAACTAGCCGTAGATTTTATTCAAAAAAGGTCTCACCAAAAGTCCCAACTGGCAGTTATAACATAGCCCATATAAGTTATGAACTAAACGTCTTAGGCACACGGGGACCCCGGAGAATGCACTGTATAATGCATTCAATACCAGTGTCTTCTCTTGATGCTGGTGGCACTGTTCCAGGACAACCCGAACTCCTCCCTCCCAACTCCCTCGACGACTCATTTCGGAGTGCATCCTTCTCCAAAGCCCTAGATCATTCCATGGAGTTCAGTAGTGCTAGATTTTCAGAAATTGGGAGGGCAGCATTGGATGGCGACGAGGAGGGAAAGATGAGACCTTTGGTTCTCAAAAATAAGCCCCCAAGATGGCACGAACAGCTGCAATGTTGGTGCCTCAATTTTCGTGGGCGGGTAACCGTTGCATCGGTTAAGAACTTTCAGTTAATTGCAGCAATACAGCCAGCTGCTGGCGCTCCAACCCCGTCTCAACCAGGCCCACCCGAGCACGACAAGATCATTCTTCAGTTCGGGAAGGTCGGTAAAGACATGTTCACGATGGATTATCGTTATCCGCTCTCTGCTTTTCAGGCTTTTGCTATATGCTTGAGCAGCTTTGATACCAAATTGGCTTGTGAATAA 1287 46.78 MSFRSIVRDVRDSIGSLSRRGFEVKLSGHHRGKSNASSLNDLHDQPPVVQNGCWASLPPELLYDVIRRLEESENTWPSRKNVVACAAVCRSWRIMCMEIVKGPEICGKLTFPVSLKQPGPHDGSVQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYIISMDAENISRSSSSYIGKLRSNFLGTKFIVYDTQPPYTAAPLPPPGKTSRRFYSKKVSPKVPTGSYNIAHISYELNVLGTRGPRRMHCIMHSIPVSSLDAGGTVPGQPELLPPNSLDDSFRSASFSKALDHSMEFSSARFSEIGRAALDGDEEGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAIQPAAGAPTPSQPGPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11269851 11272107 + CrPI670011_05g011690.1 Cre05g1169 497682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1169 428 Pfam Tub family 115 423 IPR000007 -
Cre05g1169 428 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515(InterPro)
Cre05g1169 428 SUPERFAMILY Tubby C-terminal domain-like 103 428 IPR025659 -
Cre05g1169 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Cre05g1169 428 FunFam Tubby-like F-box protein 111 428 - -
Cre05g1169 428 Pfam F-box-like 54 97 IPR001810 GO:0005515(InterPro)
Cre05g1169 428 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 350 366 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 332 349 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Cre05g1169 428 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cre05g1169 428 CDD F-box_AtTLP-like 54 98 - -
Cre05g1169 428 Gene3D Tubby Protein; Chain A 113 422 IPR025659 -
Cre05g1169 428 Gene3D - 49 101 - -
Cre05g1169 428 PANTHER TUBBY-RELATED 44 427 - -
Cre05g1169 428 ProSitePatterns Tub family signature 1. 350 363 IPR018066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1169 K19600 - - csv:101216314 865.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1574 Cre-Chr4:34300866 Cre05g1169 Cre-Chr5:11269851 7.90E-118 dispersed
Cre05g1169 Cre-Chr5:11269851 Cre08g0325 Cre-Chr8:10012404 1.10E-191 dispersed
Cre05g1169 Cre-Chr5:11269851 Cre05g2058 Cre-Chr5:32570904 3.70E-118 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g0325 . 1 431 TUB Transcription Factor Family AT1G76900 73.0 8.9e-179 623.6
Cre08g0649 . 1 432 TUB Transcription Factor Family AT1G76900 69.6 8.3e-169 590.5
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G76900 69.7 1.1e-168 590.1
Cre05g0707 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 1.6e-111 400.2
Cre05g1169 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.8e-102 367.1
Cre08g0325 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 5.2e-94 341.3
Cre08g0649 . 175 432 TUB Transcription Factor Family AT1G25280 70.4 2.6e-93 339.0
Cre05g0707 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 5.2e-70 261.5
Cre05g2058 . 295 522 TUB Transcription Factor Family AT1G25280 53.8 1.6e-66 250.0
Cre04g1574 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 7.3e-64 241.1
Cre06g1299 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.6e-53 206.1
Cre05g0707 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 2.1e-96 349.4
Cre06g1299 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.5e-86 316.6
Cre08g0325 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 4.1e-84 308.5
Cre08g0649 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.6e-83 306.6
Cre05g1169 . 113 428 TUB Transcription Factor Family AT5G18680 52.5 3.9e-82 302.0
Cre05g2058 . 231 522 TUB Transcription Factor Family AT5G18680 51.9 3.7e-77 285.4
Cre07g1395 . 117 383 TUB Transcription Factor Family AT5G18680 51.0 2.1e-67 253.1
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 1.3e-138 490.0
Cre05g2058 . 117 522 TUB Transcription Factor Family AT2G18280 59.0 4.9e-125 444.9
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G18280 52.7 1.5e-118 423.3
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 3.2e-116 415.6
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 4.2e-116 415.2
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G18280 50.9 9.6e-113 404.1
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 7.1e-100 361.3
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G18280 52.3 1.2e-94 344.0
Cre05g0707 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 5.7e-161 564.3
Cre06g1299 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.3e-146 515.8
Cre08g0325 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.5e-132 469.9
Cre08g0649 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 1.4e-130 463.4
Cre05g1169 . 1 428 TUB Transcription Factor Family AT2G47900 56.4 4.0e-130 461.8
Cre05g2058 . 126 522 TUB Transcription Factor Family AT2G47900 55.4 5.1e-117 418.3
Cre04g1574 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 4.0e-114 408.7
Cre07g1395 . 53 383 TUB Transcription Factor Family AT2G47900 51.8 3.6e-99 359.0
Cre09g0327 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 5.5e-73 271.6
Cre08g0325 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.4e-147 519.6
Cre05g1169 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 4.6e-146 514.6
Cre08g0649 . 65 432 TUB Transcription Factor Family AT1G43640 66.0 2.0e-141 499.2
Cre05g0707 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 1.4e-105 380.2
Cre05g2058 . 184 522 TUB Transcription Factor Family AT1G43640 50.1 2.5e-99 359.4
Cre06g1299 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.7e-93 339.3
Cre05g2058 . 150 522 TUB Transcription Factor Family AT1G47270 64.4 1.1e-134 476.9
Cre04g1574 . 33 413 TUB Transcription Factor Family AT1G47270 57.0 2.5e-121 432.6
Cre05g1169 . 1 428 TUB Transcription Factor Family AT1G47270 51.9 5.0e-114 408.3
Cre08g0325 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 2.7e-112 402.5
Cre08g0649 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 2.7e-112 402.5
Cre05g0707 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.7e-104 375.9
Cre07g1395 . 1 383 TUB Transcription Factor Family AT1G53320 70.0 1.1e-153 540.0
Cre05g0707 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 4.1e-97 351.7
Cre06g1299 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.9e-82 301.6
Cre05g1169 . 117 428 TUB Transcription Factor Family AT3G06380 53.5 1.9e-81 299.7
Cre08g0649 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 5.4e-81 298.1
Cre08g0325 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.6e-80 295.0
Cre05g2058 . 235 522 TUB Transcription Factor Family AT3G06380 52.9 3.9e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53680 PF01167 Tub 2.30E-116 CL0395 Cre TF