Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1185 ATGAGCATTACCGCGAATCAAAGAGGGTCCCGATCATGGACCACCGCCGAGGAGTTGCCGGTGTCCAATGGGGCTCCGCTACCGCCCAAGAAAAAATGGTCAAATGCGATGCCTCTGTTCATCGCTCTCGTCGTCGTAGCAGAGATTATCTTTCTGGGTCGCCTTGATGTGGCTAAAAATGTAGCCATGGTCGATTCATGGGCTGATTTGTTTTACCGCTCGCCGCCTTCTCGTGCACTGATTGGCGGAGCTGATGATTTGAATTCCCGGTTTATTGACGGCGACCGGATTTCGGAATTGGGGATTTGCGAGGAGTGGTTGGAGAAAGAAGACGCTGTGACATATTCTAGGGACTTCCAAAAGGAGCCGATATTGGTTTCTGGTTCTGATGAGGGGTGGAAATCTTGTGCCATAGGATGTGAATTTCAGGCCAGTCCAAGTAAAGATCCGGATGCTGCTTTTGGTTTAAATCACGAGGGTGGAATGCCTTCAATTATTCGATCCATGGAATCATCCCTATATTATGCAGATAACAATATTGCCCAGGCACGACGGAATGGCTATAGTATAGTAATGACCACCAGTCTTTCATCAGATGTACCTGTTGGATACTTCTCCTGGGCCGAGTATGATATCATGGCTCCAGTGCAGGCAAAGAATGAAAGTGCCCTTGCAGCTGCTTTCATTTCAAATTGTGGTGCTCGTAACTTCCGCCTGGAAGCTCTTGAGGCTCTTGAAAAGCTGAACGTCACAATAGATTCCTATGGTGCTTGTCACAGAAATCGTGATGGAAGCACAGTGGACAAATTGGAGACTCTGAAGCACTACAAGTTCAGCTTGGCTTTTGAGAATTCCAACGAGGAAGATTATGTGACTGAAAAGTATTTCCAATCTCTAGTTGCTGGAGCTGTTCCAGTGGTTATTGGAGCTCCAAACATTGAAGAGTTTGCTCCTTCACCTGCTTCACTTTTGCATATCAGGGAACTTTCAGATGTTGAGTCAGTTGCCAACTCTATGAAATACCTTGCAGAAAATCCTGAGGCATTCAACAACTCTCTGAGGTGGAAATATGAGGGTCCATCTGATTCTTTCAAGGCACTATTGGACATGGCAGCAGTTCATTCATCATGTCGCCTTTGTATTCATGTGGCAACTGGTATTCATGAGACCGAAGAAAAGGGTCTAGCATTCAAAAATCGACCTTGTAAATGCACTAGAGGTTCGGAGACCGTTTATCACGTGTATGTAAGAGAAAGAGGAAGGTTTAATTCAGAGTCCATTTTCTTGAGGTCCAGTAATCTGACGGTTGAAGGGCTGGCATCAGCAGTGATTTCGAAGTTCAATTCTCTGAAGCACGTACCAATATGGAAGCAGGAGAGGCCTAAAAGCTTAAAAGGAGGGGATGAATTAAGGTTGTACAAAATATACCCAGTTGGGTTGACGCAAAGGCAAGCTTTATATACCTTCAGATTTAAAGAGGACTCTGATCTCAGAAGATATGTGGAAGATAACCCTTGTGCCAAATTTGAAGCCATTTTTGTATAG 1545 44.98 MSITANQRGSRSWTTAEELPVSNGAPLPPKKKWSNAMPLFIALVVVAEIIFLGRLDVAKNVAMVDSWADLFYRSPPSRALIGGADDLNSRFIDGDRISELGICEEWLEKEDAVTYSRDFQKEPILVSGSDEGWKSCAIGCEFQASPSKDPDAAFGLNHEGGMPSIIRSMESSLYYADNNIAQARRNGYSIVMTTSLSSDVPVGYFSWAEYDIMAPVQAKNESALAAAFISNCGARNFRLEALEALEKLNVTIDSYGACHRNRDGSTVDKLETLKHYKFSLAFENSNEEDYVTEKYFQSLVAGAVPVVIGAPNIEEFAPSPASLLHIRELSDVESVANSMKYLAENPEAFNNSLRWKYEGPSDSFKALLDMAAVHSSCRLCIHVATGIHETEEKGLAFKNRPCKCTRGSETVYHVYVRERGRFNSESIFLRSSNLTVEGLASAVISKFNSLKHVPIWKQERPKSLKGGDELRLYKIYPVGLTQRQALYTFRFKEDSDLRRYVEDNPCAKFEAIFV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11454427 11459631 + CrPI670011_05g011850.1 Cre05g1185 497698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1185 514 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 221 385 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Cre05g1185 514 Gene3D - 167 363 IPR038577 -
Cre05g1185 514 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 170 363 - -
Cre05g1185 514 MobiDBLite consensus disorder prediction 1 27 - -
Cre05g1185 514 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 64 486 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Cre05g1185 514 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 112 385 - -
Cre05g1185 514 MobiDBLite consensus disorder prediction 1 19 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1185 K00753 - - csv:101202837 941.028
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0955 Cre-Chr2:6828406 Cre05g1185 Cre-Chr5:11454427 4.10E-209 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g2576 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.7 1.7e-157 553.1
Cre01g1543 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 5.4e-151 531.6
Cre05g2576 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 2.6e-166 582.4
Cre01g1543 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 2.5e-161 565.8
Cre07g1442 . 58 545 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 3.2e-140 495.7
Cre05g2576 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.3e-137 486.9
Cre01g1543 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.4 3.4e-133 472.2
Cre02g0955 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.7e-192 668.7
Cre05g1185 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 7.9e-184 640.6
Cre08g0811 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 2.8e-168 588.6
Cre05g2576 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 1.4e-125 447.2
Cre05g2576 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.9 1.0e-179 627.1
Cre01g1543 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 1.6e-169 593.2
Cre07g1442 . 64 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.2 3.6e-137 485.7
Cre05g2576 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.8 2.9e-200 695.3
Cre01g1543 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 5.2e-189 657.9
Cre05g2576 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.2 3.8e-154 542.0
Cre01g1543 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 1.4e-143 506.9
Cre05g2576 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 1.1e-148 523.9
Cre01g1543 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 3.1e-138 489.2
Cre05g2576 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 1.3e-152 537.0
Cre01g1543 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 3.2e-143 505.8
Cre02g0955 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.9e-190 662.5
Cre05g1185 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 1.4e-185 646.4
Cre05g2576 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 1.4e-125 447.2
Cre05g2576 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.9 1.0e-179 627.1
Cre01g1543 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 1.6e-169 593.2
Cre07g1442 . 64 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.2 3.6e-137 485.7
Cre05g2576 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.8 2.9e-200 695.3
Cre01g1543 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 5.2e-189 657.9
Cre05g2576 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.9 1.0e-179 627.1
Cre01g1543 . 117 584 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 1.6e-169 593.2
Cre07g1442 . 64 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.2 3.6e-137 485.7
Cre05g2576 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.1 1.4e-125 447.2
Cre05g2576 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.7 1.3e-152 537.0
Cre01g1543 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 3.2e-143 505.8
Cre05g2576 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.7 1.1e-148 523.9
Cre01g1543 . 106 584 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 3.1e-138 489.2
Cre05g2576 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.7 1.7e-157 553.1
Cre01g1543 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 5.4e-151 531.6
Cre05g2576 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 2.6e-166 582.4
Cre01g1543 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 58.1 2.5e-161 565.8
Cre07g1442 . 58 545 Xyloglucan Fucosyltransferase1 AT1G14100 50.2 3.2e-140 495.7
Cre05g2576 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 1.3e-137 486.9
Cre01g1543 . 106 585 Xyloglucan Fucosyltransferase1 AT1G14110 51.4 3.4e-133 472.2
Cre05g2576 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.2 3.8e-154 542.0
Cre01g1543 . 95 584 Xyloglucan Fucosyltransferase1 AT2G15350 50.1 1.4e-143 506.9
Cre02g0955 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.9e-190 662.5
Cre05g1185 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.0 1.4e-185 646.4
Cre02g0955 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.7e-192 668.7
Cre05g1185 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 62.1 7.9e-184 640.6
Cre08g0811 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 2.8e-168 588.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70