Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1186 ATGGCCGCCACCGCATTGAGCAGAGCTTTGTTTCTAATGGGGTTTCTTCTCTTTCTTCAACTGCAGCTTCCCGAAACAATGGCGGATTGTCCCTTGGACTTGAGTGGATCAAACTTTACTTTAGTTGCTTCTATTTGCTCTAACCCCAATGAAAGAGGGAAGTGCTGCCGCTATATCAATGCATTTGTTGCAGTTTCTGTTGCTCAGCTTGCAAATGCAACCGGTGTATTGGGAGTTTCTTCAGACTTGTCTAACATTTGCCTGCAATCTATATTTCAAACCATGGGATTGTATGGAGTTCCTAGAAATGCCACGGTTTTCTGTGGGGTTGGAACAAAAATTCCAGTGAACTACGCATGTAGAGGCCGCGAAACTGTCACACAGATGCTGGAATCTCCGAAATTTACAAACGTCAGTGAAAATTGCAAGTTGCCACTATCGGAGGAGAGTACTTGTAGGAAGTGTATTAATGCTGGGATTTTATATCTCCGCAATCTGATTGGAAGAGAAGATAATATAACGTTGAATACTTGTCGCGACGCTACATTTGTTGCACTTGCTAGCCAACTTGATCCTGTTTCAGTTGTTGATCTTGCAACCTGCTTCTTTGGAGTTCAAGGCCTTAACAAGCCTCCAGCTCCACCCCCATCTTTCGCTACACCTGATATTTCCCCAAGTCCATTAGCTGCTGAGAGTCCGGGGCCACTGACGCTAGGTGTTTCTGGTGATAAAAGTCATGAACATCATTCCTACCATCTAACATTAGTGGCGGGTATTGGCATTGCGGTGACTGTCGCTTCTGTAATGATGCTGGTTGTCTTGATTGTGCTGATTCGAAGGAAAAGCAGAGAGCTAAAGGATTCTGATAAGACGGATGTTAACTCTTCAAAATCCTTCCCTTCTCGTCCCATCAAAAAGTATCAGGAAGGACCTTCAATGTTTAAAAAGTTCAGCTATAAGGAGATCAAGAAGGCAACAGATAGTTTTAGTACAACAATTGGTCAAGGAGGATATGGAACTGTTTATAAAGCTCAATTCAGTGATGACTTAGTGGTAGCTGTTAAGAGGATGAACAAATTCTCCGAGCAAGGGGATGATGAATTTGGCAGAGAAATAGAGCTGCTTGCGAGATTACATCACCGACATCTTGTTGCTTTAAGGGGCTTTTGTGTTGAAAAGCATGAACGGTTTCTTGTATACGAGTATATGGCTAATGGAAGCTTGAAGGATCATCTTCATGCTCCTGGCAGGACCCCTCTAAGTTGGCGGACAAGAATCCAAATTGCCATTGATGTCGCCAATGCTCTGGAGTATCTTCACTATTATTGTGATCCCCCACTGTGCCATAGAGACATTAAGTCCAGCAACATTTTACTGGATGAGAACTTTGTTGCTAAGGTTGCTGATTTTGGCCTTGCACACGCTTCAAAGGGTGGTTCTATTTTCTTTGAACCTGTAAATACCGATATCCGGGGAACGCCAGGTTATATGGATCCCGAGTATGTTATCACACAAGAACTTACTGAGAAAAGTGATATATACAGCTATGGCGTGCTACTTCTGGAAATAGTTACTGGCAGACGTGCGATACAAGACGGGAAGAATTTGGTTGAATGGTCCCTGGGGTACATGATTTCAGATTCAAGGATATCTGAACTAGTAGATCCAAGTCTCAAGAGTTCTTTTAACTTGGACCAACTTCACACGGTTCTGTCAATTGTGAGATGGTGCACCGAGGGAGAAGGCAGGGCAAGGCCTTCAATTAAACAGGTGCTTCGACTATTGTACGAGAGCTCGGACCCAATGCATCAAGGGCTCGTAGAGGCTGTGGATGATGAAGAATATGGAGGTATTGAAGGGAGACAGAGCATGAGCAAGAGAAAAATGCATAAAAGCGATGCAATTTTCCACAGTGGAGATGGAAGGTATCTTGCTTCTTCATCAAGCACATCTAGGTCATATTGTAGTAGAAGCTTTTTGCTTGAAACTGGTTCACCACAATCTCCTCCCAATAATTTGTCTGTTTCAGACCAATTGTTTTAG 2043 43.32 MAATALSRALFLMGFLLFLQLQLPETMADCPLDLSGSNFTLVASICSNPNERGKCCRYINAFVAVSVAQLANATGVLGVSSDLSNICLQSIFQTMGLYGVPRNATVFCGVGTKIPVNYACRGRETVTQMLESPKFTNVSENCKLPLSEESTCRKCINAGILYLRNLIGREDNITLNTCRDATFVALASQLDPVSVVDLATCFFGVQGLNKPPAPPPSFATPDISPSPLAAESPGPLTLGVSGDKSHEHHSYHLTLVAGIGIAVTVASVMMLVVLIVLIRRKSRELKDSDKTDVNSSKSFPSRPIKKYQEGPSMFKKFSYKEIKKATDSFSTTIGQGGYGTVYKAQFSDDLVVAVKRMNKFSEQGDDEFGREIELLARLHHRHLVALRGFCVEKHERFLVYEYMANGSLKDHLHAPGRTPLSWRTRIQIAIDVANALEYLHYYCDPPLCHRDIKSSNILLDENFVAKVADFGLAHASKGGSIFFEPVNTDIRGTPGYMDPEYVITQELTEKSDIYSYGVLLLEIVTGRRAIQDGKNLVEWSLGYMISDSRISELVDPSLKSSFNLDQLHTVLSIVRWCTEGEGRARPSIKQVLRLLYESSDPMHQGLVEAVDDEEYGGIEGRQSMSKRKMHKSDAIFHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPPNNLSVSDQLF 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11460574 11467454 - CrPI670011_05g011860.1 Cre05g1186 497699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1186 680 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Cre05g1186 680 FunFam Putative receptor-like protein kinase 296 402 - -
Cre05g1186 680 Pfam SPARK 28 168 IPR043891 -
Cre05g1186 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre05g1186 680 Gene3D Phosphorylase Kinase; domain 1 290 402 - -
Cre05g1186 680 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524(InterPro)
Cre05g1186 680 Gene3D Transferase(Phosphotransferase) domain 1 403 614 - -
Cre05g1186 680 ProSiteProfiles Protein kinase domain profile. 327 606 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1186 680 SMART serkin_6 327 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1186 680 MobiDBLite consensus disorder prediction 661 680 - -
Cre05g1186 680 FunFam Putative receptor-like protein kinase 403 603 - -
Cre05g1186 680 CDD STKc_IRAK 333 595 - -
Cre05g1186 680 PANTHER OS01G0750732 PROTEIN 173 638 IPR050885 -
Cre05g1186 680 Pfam Protein kinase domain 330 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2556 Cre-Chr2:38817138 Cre05g1186 Cre-Chr5:11460574 1.10E-52 dispersed
Cre05g1186 Cre-Chr5:11460574 Cre05g1653 Cre-Chr5:27368432 5.20E-66 dispersed
Cre09g2390 Cre-Chr9:43311953 Cre05g1186 Cre-Chr5:11460574 7.00E-46 dispersed
Cre05g1186 Cre-Chr5:11460574 Cre03g0324 Cre-Chr3:1667531 1.80E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64145 PF00069 Pkinase 3.40E-49 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1186 - - - 0.0