Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1190 ATGCCTGGGACTGGAAGTGTTGCTGTTCAACCTTTGGATTTGAGCGTACACATTCCATATCATTTCAGATGCCCCATTTCTCTTGAGCTCATGCGTGATCCTGTCACCGTCAGCACCGGTCAGACCTACGACCGTTCAAGTATAGAGTCATGGGTAGCCACCGGAAACACCACTTGTCCGGTTACTAGGGCTCCACTCACCGACTTCACGCTCATCCCTAACCATACACTGCGACGCTTAATCCAGGACTGGTGCGTTGCCAATCGGTCTTACGGGGTTGAGCGGATTCCGACTCCGAAGCAACCGGCGGAACCGTCTTTGGTTAGGTCTTTGCTTAGCCAAGCTTCGTCCAGATCGAGTGGTTCGAGTTTGAGAATCTCGGCTTTGCGTCGGTTGAAAGGACTCGCTCGTGACTCGGATAAGAATCGGTCTCTGATTTCATCGCTTAACGCTCGTGAAATTCTTCTGGATGTTGTTTTTTCGAATTTGGATTCGGATTCGGATTCGTTTTCACCTGATTTGAGCCGCGAATCGCTTGCGCTTCTTGTGATGTTACCGCTCACGGAATCTGAGTGCGTTCTTGTTGCGTCTGATCCGCAACGGATTGGTTATCTGTCACATCTTCTATTTGATTCTTCGATTGAAGTCCGAATCAATGCTGCGGCGTTGATTGAAATTGTAATTGCCGGAACTCGAGCGTCGGAGCTTCGAAGCCAAATTTGTGGAATCGATGAATTGTTTGAAGGCGTTGTCGAAATCCTCAGAGATCCAACGGCGTATCCACGAGCACTCAAGGTCGGAGTTAAGGCTTTATTTGCTCTCTGTTTGGTGAAACAAACCAGGCACAAGGCAGTTTCCGCCGGCGCCGCCGAGATTATCATCGATCGATTTCCTGATTTGGAGAAGTACGACGCTGAGCGAGCCCTAGCTACGATTGAACTCATTTGCAGAATACCAACCGGTTGCGATGCGTTTGCAGCTCACGCGCTCACCGTTCCGCTTTTGGTGAAAGTCATTTTGAAGATCTCGGACAGAGCGACGGAGTCAGCCGTCGGAGCTCTGGTGTCGCTGTGTTCGGCATCGGAGGAGAATCGGCGGGAGGCGGTGGCGGCGGGGATTTTGACACAGTTGTTATTGCTGGTGCAAAGTGATTGTACGGAGCGAGTTAAACGGAAATCGCAGGTGCTGCTGAAGCTTCTTCGGGATTCATGGCCGCAGGAATCCGTTGGAAATTCCGACGATTATGCTTGCAGTGAAATTGTGGTACCCTTTTGTTAA 1278 50.47 MPGTGSVAVQPLDLSVHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQDWCVANRSYGVERIPTPKQPAEPSLVRSLLSQASSRSSGSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSDSDSFSPDLSRESLALLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEVRINAAALIEIVIAGTRASELRSQICGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDLEKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSASEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEIVVPFC 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11516977 11518254 + CrPI670011_05g011900.1 Cre05g1190 497703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1190 425 CDD RING-Ubox_PUB 19 71 IPR045210 -
Cre05g1190 425 PANTHER WDSAM1 PROTEIN 15 408 IPR045185 GO:0061630(InterPro)
Cre05g1190 425 FunFam RING-type E3 ubiquitin transferase 12 94 - -
Cre05g1190 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 91 IPR013083 -
Cre05g1190 425 ProSiteProfiles U-box domain profile. 17 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g1190 425 Gene3D - 93 413 IPR011989 -
Cre05g1190 425 SMART Ubox_2 21 84 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g1190 425 SUPERFAMILY ARM repeat 107 400 IPR016024 -
Cre05g1190 425 Pfam U-box domain 18 89 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre05g1190 425 SUPERFAMILY RING/U-box 15 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0386 Cre-Chr2:1026971 Cre05g1190 Cre-Chr5:11516977 2.50E-44 dispersed
Cre05g1190 Cre-Chr5:11516977 Cre05g1302 Cre-Chr5:13671046 3.40E-55 dispersed
Cre05g1190 Cre-Chr5:11516977 Cre10g1945 Cre-Chr10:34150534 1.20E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1190 - - - 0.0