Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g1194 | ATGGCGGCTCAGGTGCAAGCTCAGCCTCAGAATGCTATTTCCGGCATCAATCCAGCGGCGAATGGTGGTGCCAATTTTGTGACTACTTCTTTGTACGTCGGAGATCTGGACCTGAATGTCACGGATTCGCAGCTTTATGACATATTTAATCAGGTGGGTCAGGTGGTTTCGGTTCGGGTTTGCCGAGACTTGACGACCCGGAGATCTCTCGGTTATGGTTATGTCAACTACAGCAACCCACAAGATGCTGCAAGAGCATTGGATGTGCTGAACTTTACCCCTTTGAATGGAAAGCCTATTAGAGTTATGTATTCTCATCGTGACCCAAGCATTCGCAAAAGTGGGGCTGGAAATATATTTATTAAGAATTTAGACAAGGCAATTGACCACAAAGCTTTACATGATACATTTTCTGCATTTGGTAGTATCCTGTCTTGCAAAGTGGCGTTAGATTCCTCTGGCCAGTCAAAAGGCTATGGTTTTGTGCAATTTGACAATGAGGACTCTGCTCAGAAAGCAATTGAGAAGCTGAACGGTATGCTGTTAAATGATAAGCAAGTTTATGTAGGACCCTTTCTTCGTAAACAAGAAAGAGATGGTGTCGTTGACAAATCCAAATTTAACAATGTATTTGTAAAAAATCTTTCTGAGACAACTACCGAAGAGGATTTGAACAAGGCTTTTTCTGAATTTGGGACACTCACCAGTATTGTTGTGATGAGGGATGCTGATGGCAAATCAAGATGCTTTGGATTTGTTAATTTTGAAAATGCTGATGATGCTGCTAGGGCAGTTGATGCCCTCAACGGAAAGTTAGTTGATGATAAGGAGTGGTATGTTGGGAAAGCACAGAAAAAATCTGAAAGAGAAGTTGAATTAAAGCACCGGTTTGAACAAACTATGAAAGAGGCAGCGGACAAGTACCAGGGGGCAAATTTGTACATTAAAAATTTAGATGATAGCATTGGTGATGATAAGCTTAAGGAGCTGTTTGCTCCATTTGGCACAATCACCTCATGCAAGGTCATGCGCGACCCCAATGGTATAAGCAGAGGTTCTGGATTTGTTGCATTCTCAACCCCTGAAGAGGCATCTAGAGCTCTTATGGAGATGAATGGCAAAATGGTTGTTAGCAAACCATTGTATGTAGCACTTGCACAGCGGAAGGAAGATAGAAGAGCCAGATTGCAGGCTCAGTTCTCTCAAATCCGGCCAGTTGCCATGGCTGCTTCAGTTGCCCCTCGGATGCCAATATACCCTCCTGGTGGTCCAGGTATTGGACAGCAGTTGTTTTACGGTCAAGGTCCTCCTGCAATGATTCCTTCCCAAGGTGGCTTTGGTTATCAGCAGCAGCTTGTTCCTGGTATAAGGCCTGGTGGAGGACCAATGCCAAATTTCTTTGTTCCAATGGTTCAGCAGGGTCAGCAAGGTCAGCGCCCTGGTGGCAGACGTGCAGGAGCTGTCCAGCAAACTCAGCAGCCTGTTCCAATGATGCAACAACAGATGTTGCCTAGAGGAGGACGTGTCTATCGCTACCCCCCTGGAAGAGGTTTGCCTGATGTTCCTATGCCTGGTGTTGCTGGAGGCATGTTTTCTGTTCCATATGATATGGGAGGTATGCCATTGCGTGATGCGGCACACTCTCAACCTATCCCTATTGGTGCTCTGGCTTCTGCTCTTGCAAATGCTACTCCAGACCAACAGAGAACAATGCTGGGGGAGAATCTTTACCCGCTAGTGGAACAGTTGGAGCCGGACAACGCGGCCAAGGTAACTGGAATGCTTCTGGAGATGGACCAGACTGAGGTTTTGCATTTACTAGAGTCCCCAGAGGCTTTGAAGGCCAAAGTAGCCGAAGCTATGGAGGTTTTGAGGAATGTTGCTGCAGCTCAGCAGCAGCAAGCTGGCAATGCAGCGGATCAGCTAGCTTCTCTGTCGCTGACCGAGAACCTCGTGTCATGA | 1962 | 46.43 | MAAQVQAQPQNAISGINPAANGGANFVTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSGQSKGYGFVQFDNEDSAQKAIEKLNGMLLNDKQVYVGPFLRKQERDGVVDKSKFNNVFVKNLSETTTEEDLNKAFSEFGTLTSIVVMRDADGKSRCFGFVNFENADDAARAVDALNGKLVDDKEWYVGKAQKKSEREVELKHRFEQTMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAASVAPRMPIYPPGGPGIGQQLFYGQGPPAMIPSQGGFGYQQQLVPGIRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGAVQQTQQPVPMMQQQMLPRGGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRDAAHSQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAAAQQQQAGNAADQLASLSLTENLVS | 653 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11554636 | 11559169 | - | CrPI670011_05g011940.1 | Cre05g1194 | 497707 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g1194 | 653 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 117 | 189 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 208 | 285 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | PANTHER | RNA BINDING PROTEIN | 24 | 210 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) | |
| Cre05g1194 | 653 | FunFam | Polyadenylate-binding protein | 294 | 399 | - | - | |
| Cre05g1194 | 653 | FunFam | Polyadenylate-binding protein | 15 | 117 | - | - | |
| Cre05g1194 | 653 | Gene3D | - | 294 | 396 | IPR012677 | - | |
| Cre05g1194 | 653 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 198 | IPR035979 | GO:0003676(InterPro) | |
| Cre05g1194 | 653 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 311 | 388 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | FunFam | Polyadenylate-binding protein | 198 | 293 | - | - | |
| Cre05g1194 | 653 | SUPERFAMILY | RNA-binding domain, RBD | 208 | 392 | IPR035979 | GO:0003676(InterPro) | |
| Cre05g1194 | 653 | Gene3D | - | 192 | 293 | IPR012677 | - | |
| Cre05g1194 | 653 | SUPERFAMILY | PABC (PABP) domain | 495 | 645 | IPR036053 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | CDD | RRM1_I_PABPs | 30 | 109 | IPR034364 | - | |
| Cre05g1194 | 653 | MobiDBLite | consensus disorder prediction | 473 | 494 | - | - | |
| Cre05g1194 | 653 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 107 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | CDD | RRM2_I_PABPs | 115 | 191 | IPR045305 | - | |
| Cre05g1194 | 653 | SMART | rrm2_1 | 209 | 281 | IPR003954 | GO:0003676(InterPro) | |
| Cre05g1194 | 653 | SMART | rrm2_1 | 30 | 103 | IPR003954 | GO:0003676(InterPro) | |
| Cre05g1194 | 653 | SMART | rrm2_1 | 312 | 384 | IPR003954 | GO:0003676(InterPro) | |
| Cre05g1194 | 653 | SMART | rrm2_1 | 118 | 190 | IPR003954 | GO:0003676(InterPro) | |
| Cre05g1194 | 653 | CDD | RRM4_I_PABPs | 310 | 388 | - | - | |
| Cre05g1194 | 653 | Pfam | RNA recognition motif | 31 | 101 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | Pfam | RNA recognition motif | 119 | 187 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | Pfam | RNA recognition motif | 313 | 381 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | Pfam | RNA recognition motif | 210 | 278 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 552 | 629 | IPR002004 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 30 | 625 | IPR006515 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | FunFam | Polyadenylate-binding protein | 118 | 191 | - | - | |
| Cre05g1194 | 653 | Gene3D | - | 118 | 190 | IPR012677 | - | |
| Cre05g1194 | 653 | Gene3D | - | 1 | 117 | IPR012677 | - | |
| Cre05g1194 | 653 | SMART | rrm1_1 | 118 | 190 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | SMART | rrm1_1 | 30 | 103 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | SMART | rrm1_1 | 209 | 281 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | SMART | rrm1_1 | 312 | 384 | IPR000504 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | SMART | poly_2 | 564 | 627 | IPR002004 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | FunFam | Polyadenylate-binding protein | 548 | 631 | - | - | |
| Cre05g1194 | 653 | Pfam | Poly-adenylate binding protein, unique domain | 559 | 624 | IPR002004 | GO:0003723(InterPro) | |
| Cre05g1194 | 653 | Gene3D | - | 548 | 629 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g0879 | Cre-Chr5:7925826 | Cre05g1194 | Cre-Chr5:11554636 | 4.80E-29 | dispersed | |
| Cre05g1194 | Cre-Chr5:11554636 | Cre08g0666 | Cre-Chr8:19651823 | 7.90E-189 | dispersed | |
| Cre08g1041 | Cre-Chr8:23587291 | Cre05g1194 | Cre-Chr5:11554636 | 3.10E-08 | transposed | |
| Cre09g1554 | Cre-Chr9:31508309 | Cre05g1194 | Cre-Chr5:11554636 | 4.20E-08 | transposed | |
| Cre10g1938 | Cre-Chr10:34052736 | Cre05g1194 | Cre-Chr5:11554636 | 1.90E-18 | transposed | |
| Cre02g0965 | Cre-Chr2:6960819 | Cre05g1194 | Cre-Chr5:11554636 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g1194 | K13126 | - | csv:101219802 | 1203.73 |