Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1199 | ATGGCAATGCATCGGTACGTACAAGCTGATGATGATGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAAGAGGAGAAATGGGAGGAGGAGGAGGAGCAGGAGGAGCAGGAGGAAGATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCGATTTTGGCTGTTGCTTATTTTGACAGATTCCTCCTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTTTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCAACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAAAGCTGTTACAATCTTGTTGTGGAGCATTCAAAGGCCTATTCCAATGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGAGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGCCAAAGATGAAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAGCCCTTCTTGA | 1143 | 44.27 | MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEEQEEQEEDVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISAARSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLEFFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQSCYNLVVEHSKAYSNGFYHPINSHKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEEPKMKFHSLNRAFLDIVGSPS | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11627247 | 11628687 | + | CrPI670011_05g011990.1 | Cre05g1199 | 497712 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1199 | 380 | SUPERFAMILY | Cyclin-like | 65 | 199 | IPR036915 | - | |
Cre05g1199 | 380 | FunFam | D3-type cyclin | 92 | 199 | - | - | |
Cre05g1199 | 380 | SUPERFAMILY | Cyclin-like | 202 | 301 | IPR036915 | - | |
Cre05g1199 | 380 | FunFam | CYCLIN D32 | 200 | 289 | - | - | |
Cre05g1199 | 380 | SMART | Cyclin_C_2 | 201 | 336 | IPR004367 | - | |
Cre05g1199 | 380 | MobiDBLite | consensus disorder prediction | 309 | 335 | - | - | |
Cre05g1199 | 380 | Coils | Coil | 20 | 49 | - | - | |
Cre05g1199 | 380 | Gene3D | - | 81 | 199 | - | - | |
Cre05g1199 | 380 | CDD | CYCLIN_AtCycD-like_rpt2 | 201 | 291 | - | - | |
Cre05g1199 | 380 | Pfam | Cyclin, N-terminal domain | 72 | 198 | IPR006671 | - | |
Cre05g1199 | 380 | CDD | CYCLIN_AtCycD-like_rpt1 | 98 | 196 | - | - | |
Cre05g1199 | 380 | Pfam | Cyclin, C-terminal domain | 201 | 314 | IPR004367 | - | |
Cre05g1199 | 380 | ProSitePatterns | Cyclins signature. | 99 | 130 | IPR048258 | - | |
Cre05g1199 | 380 | SMART | cyclin_7 | 205 | 293 | IPR013763 | - | |
Cre05g1199 | 380 | SMART | cyclin_7 | 104 | 192 | IPR013763 | - | |
Cre05g1199 | 380 | PANTHER | CYCLINS | 48 | 294 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cre05g1199 | 380 | Gene3D | - | 70 | 289 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1199 | Cre-Chr5:11627247 | Cre08g1559 | Cre-Chr8:28237832 | 1.20E-75 | dispersed | |
Cre04g1374 | Cre-Chr4:32582297 | Cre05g1199 | Cre-Chr5:11627247 | 3.80E-28 | transposed | |
Cre02g0981 | Cre-Chr2:7216459 | Cre05g1199 | Cre-Chr5:11627247 | 6.20E-69 | wgd | |
Cre04g1332 | Cre-Chr4:32140629 | Cre05g1199 | Cre-Chr5:11627247 | 5.90E-71 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1199 | K14505 | - | csv:101221213 | 643.654 |