Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1199 ATGGCAATGCATCGGTACGTACAAGCTGATGATGATGCCCAAACCCATTTGTTTCCGCTCGATTCTTTGTTTTGTGAAGAGGAGAAATGGGAGGAGGAGGAGGAGCAGGAGGAGCAGGAGGAAGATGTAGCTGAGTTAGAACAAACCCATTTCTCTTCTTTGGGATTTTTGGACGAACATCTCTCCGGGGAAGATGAACGGCTTCTCTCCATGTTGTCTAAGGAAACAGAGCAGCTGAAACAGAGCAATCTCCACCTTGAAGCTTTGTTGATGGATCCTTCTATTTCTGCTGCTCGTTCTTCAGCTGTGGACTGGATGCTCAAAGTTCAATCCCATTATGGGTTTTCAACTCTCACTGCGATTTTGGCTGTTGCTTATTTTGACAGATTCCTCCTGAGCTTCCATTTTAAGAGTGACAAGCCGTGGATGAACCAGCTTGTGGCTGTCACTTGCCTCTCTTTGGCGGCTAAAGTGGAGGAGATTCAAGTTCCTCTTCTCTTGGACCTTCAAGTAGAGGATGCTAAGTATGTGTTTGAGGCCAAAACCATTCAGAGAATGGAGCTTCTAGTGCTCTCAACTCTTCAATGGAGGATGCATTTGGTGACTCCATATTCTTTTCTTGATCACATTGTAAAGAGGCTTGGGTTAAAGAACAATCTTCACTTGGAGTTTTTCAGGCGTTCTGAGTATCTTCTCCTCTCTCTACTTTCAGATTCAAGATTTGTGGGTTATCTCCCATCTGTCTTGGCAACTGCAACAATGATGGAAGTGATAGATCAGATTGAGCCTCATAAGACATTGGAGCACCAAGATAAGCTTCTGGGTGTCCTCAAAATGAACAAGGAAAAGGTGCAAAGCTGTTACAATCTTGTTGTGGAGCATTCAAAGGCCTATTCCAATGGCTTTTATCATCCCATCAACTCCCACAAGCGCAAGCATGAACAGCAAGCTCCTGATAGCCCAAGTGGTGTGATTGATGCTGGTTTCAGTTCAGACAGCTCCAATGATTCTTGGGCATTTAGAGCAACATCAGTTTGTTCATCACCTGAACCTTCTTTCAAGAAGAGCAAATCTGAAGAGCCAAAGATGAAATTTCATTCTCTTAACAGGGCCTTTCTGGACATTGTTGGCAGCCCTTCTTGA 1143 44.27 MAMHRYVQADDDAQTHLFPLDSLFCEEEKWEEEEEQEEQEEDVAELEQTHFSSLGFLDEHLSGEDERLLSMLSKETEQLKQSNLHLEALLMDPSISAARSSAVDWMLKVQSHYGFSTLTAILAVAYFDRFLLSFHFKSDKPWMNQLVAVTCLSLAAKVEEIQVPLLLDLQVEDAKYVFEAKTIQRMELLVLSTLQWRMHLVTPYSFLDHIVKRLGLKNNLHLEFFRRSEYLLLSLLSDSRFVGYLPSVLATATMMEVIDQIEPHKTLEHQDKLLGVLKMNKEKVQSCYNLVVEHSKAYSNGFYHPINSHKRKHEQQAPDSPSGVIDAGFSSDSSNDSWAFRATSVCSSPEPSFKKSKSEEPKMKFHSLNRAFLDIVGSPS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11627247 11628687 + CrPI670011_05g011990.1 Cre05g1199 497712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1199 380 SUPERFAMILY Cyclin-like 65 199 IPR036915 -
Cre05g1199 380 FunFam D3-type cyclin 92 199 - -
Cre05g1199 380 SUPERFAMILY Cyclin-like 202 301 IPR036915 -
Cre05g1199 380 FunFam CYCLIN D32 200 289 - -
Cre05g1199 380 SMART Cyclin_C_2 201 336 IPR004367 -
Cre05g1199 380 MobiDBLite consensus disorder prediction 309 335 - -
Cre05g1199 380 Coils Coil 20 49 - -
Cre05g1199 380 Gene3D - 81 199 - -
Cre05g1199 380 CDD CYCLIN_AtCycD-like_rpt2 201 291 - -
Cre05g1199 380 Pfam Cyclin, N-terminal domain 72 198 IPR006671 -
Cre05g1199 380 CDD CYCLIN_AtCycD-like_rpt1 98 196 - -
Cre05g1199 380 Pfam Cyclin, C-terminal domain 201 314 IPR004367 -
Cre05g1199 380 ProSitePatterns Cyclins signature. 99 130 IPR048258 -
Cre05g1199 380 SMART cyclin_7 205 293 IPR013763 -
Cre05g1199 380 SMART cyclin_7 104 192 IPR013763 -
Cre05g1199 380 PANTHER CYCLINS 48 294 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cre05g1199 380 Gene3D - 70 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1199 Cre-Chr5:11627247 Cre08g1559 Cre-Chr8:28237832 1.20E-75 dispersed
Cre04g1374 Cre-Chr4:32582297 Cre05g1199 Cre-Chr5:11627247 3.80E-28 transposed
Cre02g0981 Cre-Chr2:7216459 Cre05g1199 Cre-Chr5:11627247 6.20E-69 wgd
Cre04g1332 Cre-Chr4:32140629 Cre05g1199 Cre-Chr5:11627247 5.90E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1199 K14505 - csv:101221213 643.654