Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1202 ATGATGCACACCATGAAACCATCGCAACTTCTGGCCCTGTTTTCCACCTTCACTTTCTGTTTCCCCTGTCTTGCTCTCAACAGCGATGGCATTCTCTTGATTTCTCTCAAACACTCCATTCTCGGCGATCCTTTGTCTGTTTTCGCTAATTGGAATTTCTACGACGACACTCCCTGTTCCTGGCGTGGAGTTACCTGCACCGACCTCCGAGACTATGGCGGCGGATGGTCGGATTTCCTCAGAGTTACTGCCCTCTCCCTCCCTGGCAGCCAGCTTCTGGGTTCCATTCCTGATGAGCTTGGAAGGATCGAACACCTTCGTCTTCTCGATCTTTCCGGTAATTTCTTTAATGGGTCTCTCCCCACTTCCATTTTCAATGCTTCTGAGCTTCAGATTCTTTCTCTTTCCAACAATGTTATCTCCGGCGAGTTGCCGGCGGACATTGGGGGTTTGCAGAGTCTTCAGGTTTTGAATCTCTCTGATAATGCGTTGGCCGGAAAAGTCCCGGGAAATCTCACTGCTCTGAAGAATCTAACTGCTGTTTCTCTGAGGAGTAATTACTTCACCGGAGAGATTCCGGGGAATTTCAGTTCGGTTGAGGTTTTGGATCTGTCTTCCAATTTGTTCAATGGGTCTTTGCCGGCTGATTTTGGTGGGGAGAAGCTGCGGTATTTGAACTTCTCTTACAATAAAATTTCAAGTCCGATTCCGCTGGATTTCGCCAAGAGGATTCCAATGAATGCGACTATGGATCTTTCTTTCAATAATCTCACCGGAGCAATTCCTCAGTCGATTGCTCTGCTCAGCCAGAAAACAGAGGCATTCGCCGGAAATGAAGATCTCTGTGGGAAGCCATTGAAGCACCTCTGTTCAATTCCTTCTTCACTCACAACCCCCCCAAATGTTTCTGAAAGTTCATCTTCGTCTCCAGCAATCGCCGCCATACCCAAAACAATCGGCTCTGTTCCGGCAACACAGTCCACCCGAGGTCCAAACGGGACACAAACTTCTCAGCCTCAAAACACCATGAAACCCATCACAATAGCTGCAATAGCAGTCGGAGACATCGCCGGAATCGCCATTCTCGCCGTTGTGATTCTCTACGTCTACCACCACCGGAAACGTAAAAACCCCAACTCCAAAACCCCTAAATCCACCGAGAAGAAGCCGCCGATTGACTCAGAACAAGACCCTCAAACTAACCACAAAAAACCCTCATCAGTGTTATTCTGTTTAGCCAACAAAGGAGAAGAGACATCGGAGGCGACGAGTTCTTCCGACGGCGAAGAACAGAGAGAGAAACCCGGAACAACCCACGGCGGAGAGAATAGAGACAGTAAGAAAAACGGCGTGCTGGTGACGGTGGACGGAGAAACAGAGCTGGAATTAGAGACTTTATTAAAGGCATCGGCGTATATACTTGGAGCGAGCGGGGGGAGCATCGTGTACAAGGCGGTGCTGGAGGACGGTACCGCGTTCGCCGTCAGAAGGATCGGCGACGTCAGCGTGGAGAAATTGAGGGATTTTGAGAGCCAAGTGAGAGCCATTGCTAAGGTTCGACATCAAAATTTGGTGAAAATTCGAGGGTTCTTTTGGGGAGAAGATGAGAAGCTCATCATCTATGATTATGTCTCCAATGGCTGCCTTTCAACTTCCCTTCACAGAAAACCGAGTTCATCGTCTTCTTCCCAGAGCCATCTATCATTTGAAGTCCGAGTGAAAATCGCGAGAGGAATCGCCCGAGGACTGGCCTTCATCCACGACAAGAAGCACATCCATGGCAACCTCAAGCCTTCCAACGTTCTCTTGAATTCCGAAATGGAGCCCTTAATCGCCGATCTCGGCCTGGACAAGCTCCTCTCCGGCAGATCCAAAATCGCAATCGCCTCCAGTTCTGCCCGGAACTTCGGCAGCCACAGATCCACGCCCAATCGTGAGTACCAAGACGCCAACGGCGGAAGCCCGTCGGTAAGCCTGGGATCGGCGTACCAGGCGCCGGAATCGCTTAAGAATGTGAAAGCGAGCCCTAAATGGGATGTGTACTCGTTCGGGGTGATTCTGCTGGAGGTTGTGAGCGGGAAGATTGTGACGGAGAGGGAATTAGGCGGCGGTGAAGAGGAGGGGCGGATTAAGAAAATGGTGGATTTGGCGATTAGAGGGGAAGTGGAAGGGAAAGAAGAGGCGGTAATGGGGATTTTTAGATTAGGGTTTAGCTGTGTTAGTTTTTTGCCTCAAAAAAGACCCACCATGAAAGAGGCTCTCCAAGTTCTTGACAAAATTTCTTCCATCATTTCTTCTTCTAACACCTAA 2310 49.57 MMHTMKPSQLLALFSTFTFCFPCLALNSDGILLISLKHSILGDPLSVFANWNFYDDTPCSWRGVTCTDLRDYGGGWSDFLRVTALSLPGSQLLGSIPDELGRIEHLRLLDLSGNFFNGSLPTSIFNASELQILSLSNNVISGELPADIGGLQSLQVLNLSDNALAGKVPGNLTALKNLTAVSLRSNYFTGEIPGNFSSVEVLDLSSNLFNGSLPADFGGEKLRYLNFSYNKISSPIPLDFAKRIPMNATMDLSFNNLTGAIPQSIALLSQKTEAFAGNEDLCGKPLKHLCSIPSSLTTPPNVSESSSSSPAIAAIPKTIGSVPATQSTRGPNGTQTSQPQNTMKPITIAAIAVGDIAGIAILAVVILYVYHHRKRKNPNSKTPKSTEKKPPIDSEQDPQTNHKKPSSVLFCLANKGEETSEATSSSDGEEQREKPGTTHGGENRDSKKNGVLVTVDGETELELETLLKASAYILGASGGSIVYKAVLEDGTAFAVRRIGDVSVEKLRDFESQVRAIAKVRHQNLVKIRGFFWGEDEKLIIYDYVSNGCLSTSLHRKPSSSSSSQSHLSFEVRVKIARGIARGLAFIHDKKHIHGNLKPSNVLLNSEMEPLIADLGLDKLLSGRSKIAIASSSARNFGSHRSTPNREYQDANGGSPSVSLGSAYQAPESLKNVKASPKWDVYSFGVILLEVVSGKIVTERELGGGEEEGRIKKMVDLAIRGEVEGKEEAVMGIFRLGFSCVSFLPQKRPTMKEALQVLDKISSIISSSNT 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11662292 11666300 - CrPI670011_05g012020.1 Cre05g1202 497715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1202 769 SUPERFAMILY Protein kinase-like (PK-like) 473 760 IPR011009 -
Cre05g1202 769 MobiDBLite consensus disorder prediction 375 450 - -
Cre05g1202 769 Pfam Leucine rich repeat N-terminal domain 26 67 IPR013210 -
Cre05g1202 769 Pfam Protein kinase domain 474 755 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1202 769 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515(InterPro)
Cre05g1202 769 Gene3D Phosphorylase Kinase; domain 1 438 543 - -
Cre05g1202 769 Gene3D Transferase(Phosphotransferase) domain 1 544 768 - -
Cre05g1202 769 MobiDBLite consensus disorder prediction 635 658 - -
Cre05g1202 769 MobiDBLite consensus disorder prediction 425 450 - -
Cre05g1202 769 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 26 191 - -
Cre05g1202 769 Pfam Leucine Rich Repeat 221 241 IPR001611 GO:0005515(InterPro)
Cre05g1202 769 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515(InterPro)
Cre05g1202 769 PANTHER OS05G0588300 PROTEIN 150 761 IPR050994 -
Cre05g1202 769 MobiDBLite consensus disorder prediction 380 400 - -
Cre05g1202 769 Gene3D Ribonuclease Inhibitor 195 291 IPR032675 -
Cre05g1202 769 Gene3D Ribonuclease Inhibitor 26 194 IPR032675 -
Cre05g1202 769 FunFam Leucine-rich repeat receptor-like protein kinase 198 292 - -
Cre05g1202 769 ProSiteProfiles Protein kinase domain profile. 468 764 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1202 769 MobiDBLite consensus disorder prediction 320 341 - -
Cre05g1202 769 SUPERFAMILY L domain-like 26 288 - -
Cre05g1202 769 ProSiteProfiles Leucine-rich repeat profile. 221 242 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1130 Cre-Chr2:10164067 Cre05g1202 Cre-Chr5:11662292 3.80E-150 dispersed
Cre05g1202 Cre-Chr5:11662292 Cre09g1938 Cre-Chr9:38211619 1.10E-64 dispersed
Cre05g1202 Cre-Chr5:11662292 Cre05g2421 Cre-Chr5:35664947 2.00E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64146 PF00069 Pkinase 5.20E-30 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1202 - - - 0.0