Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g1206 | ATGTGGTGTAAATGCGATGCAGGTGAGCAGAACCACTGGGATTTCACCAACCCCCAAAATCTCAATCACCTTCCACTGCTGAGATGTCGTCTTCATTCTTCTCCGTTTCCCCACTTTGCTTCTTCCCTTTCTCTCCTTACTCTGTATTTATCTCCTTCCATTCCTCAGTTCCTCCCTTCTTCAACCAAAATGGGTAGCATTGAAACAGACAGAACTGTAACAGGATTCGCCGCCAAAGACCCATCTGGGATTCTCTCTCCTTACACTTACACTCTCAGAAACACCGGCCCCCAAGATGTTTTCATCAAAGTCATTTGCTGTGGAATCTGCCACTCTGATCTTCACCAAATCAAGAATGAACTCGGCATGTCCAATTACCCCATGGTTCCTGGACACGAGGTGGTCGGGGAAGTGGTGGAGGTTGGATCCGAAGTGGATCGATTCAGAGTTGGGGAGATGGTCGGAGTTGGGTGTATTCTTGGATCATGTTCGAGTTGTAATCCTTGTAATTCCGATAAGGAGCAGTACTGTAACAAGAGAATCTGGACCTATAACGACGTGTATCACGACGGCCGCCCCACCCAAGGCGGTTTCTCCTCCGCCATGGTTGTCCACCAAAAGTTTGTGGTGAGAATCCCAGATGGGATGTCGCCGGAGCAGGCGGCGCCGCTTCTGTGCGCGGGAGTGACGGTGTATAGCCCGCTAAGTCACTTTGGACTGAAACAGAGTGGGCTAAGAGGCGGAATTTTGGGGCTGGGTGGCGTTGGGCATATGGGTGTGAAAGTGGCAAAAGCTTTGGGCCACCACGTGACGGTGATAAGCTCGTCGGAGAAGAAGAGGGAGGAGGCTCTGGAACATCTCGGTGCCGACGAGTACTTGGTCAGCTCCGACAACACTCAAATGGAACGAGCCATTGACTCGCTCGATTACATTATCGACACCGTCCCTGTTTTTCATCCGCTCGAGCCGTATCTCTCACTGCTAAAACTCGACGGCAAATTGATTTTGATGGGTGTCATTAATACCCCATTGCAATTCGTTTCCCCTCTCCTTATGCTCGGGAGGAAGACGATTACAGGGAGCTTCATCGGAAGCATGACAGAGACACAAGAAGTATTGGATTTTTTTAAAGAGAAGGAGCTGAGCTCCATGATTGAAGTGATAAAGCTTGATTACATAAACAAGGCTTTCGAGAGGTTGGAGAAGAACGATGTTAGATACAGGTTCGTCGTCGACGTTGCCGGAAGTAAGCTGCCTCAGTGA | 1263 | 49.56 | MWCKCDAGEQNHWDFTNPQNLNHLPLLRCRLHSSPFPHFASSLSLLTLYLSPSIPQFLPSSTKMGSIETDRTVTGFAAKDPSGILSPYTYTLRNTGPQDVFIKVICCGICHSDLHQIKNELGMSNYPMVPGHEVVGEVVEVGSEVDRFRVGEMVGVGCILGSCSSCNPCNSDKEQYCNKRIWTYNDVYHDGRPTQGGFSSAMVVHQKFVVRIPDGMSPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSEKKREEALEHLGADEYLVSSDNTQMERAIDSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVSPLLMLGRKTITGSFIGSMTETQEVLDFFKEKELSSMIEVIKLDYINKAFERLEKNDVRYRFVVDVAGSKLPQ | 420 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11711350 | 11713034 | - | CrPI670011_05g012060.1 | Cre05g1206 | 497719 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g1206 | 420 | FunFam | Cinnamyl alcohol dehydrogenase | 227 | 383 | - | - | |
| Cre05g1206 | 420 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 131 | 145 | IPR002328 | GO:0008270(InterPro)|GO:0016491(InterPro) | |
| Cre05g1206 | 420 | PANTHER | ALDEHYDE REDUCTASE | 72 | 415 | IPR047109 | GO:0009809(PANTHER)|GO:0016616(InterPro)|GO:0016616(PANTHER)|GO:0045551(PANTHER) | |
| Cre05g1206 | 420 | Pfam | Zinc-binding dehydrogenase | 254 | 377 | IPR013149 | - | |
| Cre05g1206 | 420 | FunFam | probable cinnamyl alcohol dehydrogenase | 76 | 233 | - | - | |
| Cre05g1206 | 420 | SUPERFAMILY | GroES-like | 80 | 244 | IPR011032 | - | |
| Cre05g1206 | 420 | Pfam | Alcohol dehydrogenase GroES-like domain | 96 | 214 | IPR013154 | - | |
| Cre05g1206 | 420 | FunFam | Putative cinnamyl alcohol dehydrogenase 6 | 384 | 413 | - | - | |
| Cre05g1206 | 420 | Gene3D | - | 227 | 383 | - | - | |
| Cre05g1206 | 420 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 216 | 381 | IPR036291 | - | |
| Cre05g1206 | 420 | CDD | CAD1 | 74 | 412 | IPR047109 | GO:0016616(InterPro) | |
| Cre05g1206 | 420 | Gene3D | - | 76 | 413 | - | - | |
| Cre05g1206 | 420 | SMART | PKS_ER_names_mod | 83 | 411 | IPR020843 | GO:0016491(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g1206 | Cre-Chr5:11711350 | Cre05g2697 | Cre-Chr5:37902873 | 1.30E-06 | dispersed | |
| Cre04g1444 | Cre-Chr4:33261193 | Cre05g1206 | Cre-Chr5:11711350 | 6.50E-108 | transposed | |
| Cre05g1713 | Cre-Chr5:28837171 | Cre05g1206 | Cre-Chr5:11711350 | 1.10E-99 | transposed | |
| Cre09g2383 | Cre-Chr9:43189784 | Cre05g1206 | Cre-Chr5:11711350 | 2.00E-85 | transposed | |
| Cre02g0991 | Cre-Chr2:7370929 | Cre05g1206 | Cre-Chr5:11711350 | 1.30E-172 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g1206 | K00083 | - | csv:101222395 | 641.728 |