Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1232 ATGCCCTTAGAAGGAACCACCAACAACAACAATTCCTTCAGTGGAGCAACACTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTTGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCGAGGCAGCGGAGTTGGAGGAAATAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCAGTAGAAGGGATTAAATGTTTGAATAATAATGTTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTTTCCGATCAAAGAGCTCTGCCCGACCGGTCCGGCCAGCCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGACATGGATGTCATAACACCAACTTTCTTGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA 1098 43.62 MPLEGTTNNNNSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSSGGGGVVEMGYHHHHRGSGVGGNNNNNNNNNNNCSARFNNGVVSVEGIKCLNNNVNSNNSNAASSSSDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQFSDQRALPDRSGQPLPELEFGSSTLWSNSSRDVWPQRNSNDMDVITPTFLSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12071821 12078115 - CrPI670011_05g012320.1 Cre05g1232 497745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1232 365 MobiDBLite consensus disorder prediction 235 258 - -
Cre05g1232 365 MobiDBLite consensus disorder prediction 288 310 - -
Cre05g1232 365 MobiDBLite consensus disorder prediction 1 17 - -
Cre05g1232 365 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 29 363 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cre05g1232 365 MobiDBLite consensus disorder prediction 235 310 - -
Cre05g1232 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 181 234 IPR006447 GO:0003677(InterPro)
Cre05g1232 365 Gene3D - 180 237 - -
Cre05g1232 365 MobiDBLite consensus disorder prediction 1 25 - -
Cre05g1232 365 FunFam Myb family transcription factor 179 237 - -
Cre05g1232 365 Pfam Myb-like DNA-binding domain 182 233 IPR001005 -
Cre05g1232 365 SUPERFAMILY Homeodomain-like 178 234 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1232 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1379 Cre-Chr1:27007022 Cre05g1232 Cre-Chr5:12071821 3.00E-33 dispersed
Cre05g1232 Cre-Chr5:12071821 Cre10g0392 Cre-Chr10:2744250 5.90E-40 dispersed
Cre05g1232 Cre-Chr5:12071821 Cre09g1112 Cre-Chr9:11664730 4.60E-45 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre05g1232 . 163 363 G2-like Transcription Factor Family AT5G16560 56.5 8.7e-45 178.3
Cre09g1112 . 197 401 G2-like Transcription Factor Family AT5G16560 51.7 1.3e-40 164.5
Cre05g2130 . 1 167 G2-like Transcription Factor Family AT5G42630 58.9 5.5e-41 164.9
Cre08g1490 . 53 139 G2-like Transcription Factor Family AT5G42630 83.9 1.4e-36 150.2
Cre05g2473 . 19 256 G2-like Transcription Factor Family AT1G25550 55.1 3.5e-53 205.7
Cre08g0476 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.6e-52 201.4
Cre03g0444 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 2.7e-60 229.6
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.5e-74 275.0
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 7.5e-69 257.7
Cre05g0421 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 2.5e-65 246.1
Cre05g0421 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.1e-79 293.9
Cre01g0200 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.7e-42 168.3
Cre02g2184 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.8e-40 162.2
Cre07g0585 . 4 152 G2-like Transcription Factor Family AT3G24120 54.9 1.1e-39 161.0
Cre04g1728 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.8e-37 152.5
Cre11g1402 . 1 228 G2-like Transcription Factor Family AT1G69580 55.6 2.9e-49 193.0
Cre01g0200 . 1 389 G2-like Transcription Factor Family AT1G79430 53.7 6.5e-84 308.1
Cre02g2184 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 8.0e-74 274.6
Cre05g0421 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 3.7e-39 159.5
Cre04g1727 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.2e-56 216.1
Cre04g0637 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.4e-91 333.6
Cre10g1770 . 1 283 G2-like Transcription Factor Family AT3G10760 58.4 3.0e-83 305.8
Cre04g0637 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.7e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006004 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53688 PF00249 Myb_DNA-binding 1.60E-05 CL0123 Cre TF