Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1232 ATGCCCTTAGAAGGAACCACCAACAACAACAATTCCTTCAGTGGAGCAACACTGCATCCACCCCCACCGCTCCCGCATCTCCGGGGGCTTTCGACGTTCGATGTATCATCAGACGGTTTACGACCGATCAAAGGGATTCCGGTGTATCACAACCGTCCATTTCCATTTTTGGGTGTGGATCAAAAAGATCACCATTATTTTCACCAATTTCCATCAGCTTGCTTCTTCCCAAATTACTTGAACACGAACACAAACGGAAGCAGCGGCGGAGGAGGAGTGGTTGAAATGGGTTATCATCATCATCATCGAGGCAGCGGAGTTGGAGGAAATAATAATAATAATAATAATAATAATAATAATTGTTCAGCGAGGTTCAACAATGGGGTTGTTTCAGTAGAAGGGATTAAATGTTTGAATAATAATGTTAATAGTAATAATAGTAATGCAGCTTCTTCTTCTTCTGATGTTTGTTCTCATGGGATGATGATGATGAGATCCAGATTTTTGCAGAAGCTTCCTGCAAAACGAAGCATGAGAGCTCCTAGAATGAGATGGACTACCTCCTTACATGCTCGCTTCGTTCATGCTGTCGAACATCTCGGCGGCCATGAAAGAGCAACACCAAAGTCAGTTCTTGAGCTTATGGATGTTAAGGATCTAACATTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAACCTGCAGCTTCCTCAGGCCAATCGGATGGTTCGGGAGAGGATGATGCATCTCCTACAATGGACACAACCAGAGGGGATCATGGTGCCAAGCAATTTTCCGATCAAAGAGCTCTGCCCGACCGGTCCGGCCAGCCGCTGCCAGAGTTGGAATTTGGCTCCTCCACACTTTGGTCTAATTCTTCAAGAGATGTTTGGCCACAAAGAAACTCTAATGACATGGATGTCATAACACCAACTTTCTTGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGTAATGAAGAGATACAATTCAGAATTCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAACAAGACTAA 1098 43.62 MPLEGTTNNNNSFSGATLHPPPPLPHLRGLSTFDVSSDGLRPIKGIPVYHNRPFPFLGVDQKDHHYFHQFPSACFFPNYLNTNTNGSSGGGGVVEMGYHHHHRGSGVGGNNNNNNNNNNNCSARFNNGVVSVEGIKCLNNNVNSNNSNAASSSSDVCSHGMMMMRSRFLQKLPAKRSMRAPRMRWTTSLHARFVHAVEHLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGQSDGSGEDDASPTMDTTRGDHGAKQFSDQRALPDRSGQPLPELEFGSSTLWSNSSRDVWPQRNSNDMDVITPTFLSTQQKSMHQIQECDSGVMKRYNSEFKKPSLEFRLGRAEWDVKQD 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12071821 12078115 - CrPI670011_05g012320.1 Cre05g1232 497745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1232 365 MobiDBLite consensus disorder prediction 235 258 - -
Cre05g1232 365 MobiDBLite consensus disorder prediction 288 310 - -
Cre05g1232 365 MobiDBLite consensus disorder prediction 1 17 - -
Cre05g1232 365 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 29 363 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0010158(InterPro)
Cre05g1232 365 MobiDBLite consensus disorder prediction 235 310 - -
Cre05g1232 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 181 234 IPR006447 GO:0003677(InterPro)
Cre05g1232 365 Gene3D - 180 237 - -
Cre05g1232 365 MobiDBLite consensus disorder prediction 1 25 - -
Cre05g1232 365 FunFam Myb family transcription factor 179 237 - -
Cre05g1232 365 Pfam Myb-like DNA-binding domain 182 233 IPR001005 -
Cre05g1232 365 SUPERFAMILY Homeodomain-like 178 234 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1379 Cre-Chr1:27007022 Cre05g1232 Cre-Chr5:12071821 3.00E-33 dispersed
Cre05g1232 Cre-Chr5:12071821 Cre10g0392 Cre-Chr10:2744250 5.90E-40 dispersed
Cre05g1232 Cre-Chr5:12071821 Cre09g1112 Cre-Chr9:11664730 4.60E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53688 PF00249 Myb_DNA-binding 1.60E-05 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1232 - - - 0.0