Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1275 | ATGGCGACGAAGATCGACGTAATCGAAGAGGAAGAAATCTCAAAGCTCAAAGAAGGCACTCTCATTTCCGCCGTCGCCCGACTCTGTCCCTCGAATTCGGTCGTCATCATCCAAAAGGTTATCGCGGAGGTGATCGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTATGGATCAGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTGTATTCGGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACTCTCACCTTTGCCCTTTTTCGTCGCTTCCCCTTCTCTCGGGTACCAATATACATAGGAGCTCAAGTGATGGGGTCCCTTCTGGCAAGCTGCACATTGGACCTAATGCTTGAAGTGACCCCGGAAGCCTTCTTTGGGACGGTGCCCGTTGGATCCAATCTCCAATCTTTGGTTCTTGAAATTATCATCACATTTCTCTTGATGTTTGTCGTCTCTGGGGTCTCCACTGATGACAGAGCCGTAGGAGAATTGGGAGGAATTGTGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCGATTTCAGGAGCTTCTATGAATCCAGCTAGGAGCATTGGACCAGCAATAGTGAAACGACAGTTCAAAGGATTATGGGTTTACATAGTAGGACCGTTGGTCGGAGCGGTCGCCGGAGGATTTTCCTATAACCTTCTTAGATTCACAAACAAGCCACTGCGAGAGATTGCCAAAAGCAGCTCATTTCTCACCACCAACTAG | 801 | 49.06 | MATKIDVIEEEEISKLKEGTLISAVARLCPSNSVVIIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTLTFALFRRFPFSRVPIYIGAQVMGSLLASCTLDLMLEVTPEAFFGTVPVGSNLQSLVLEIIITFLLMFVVSGVSTDDRAVGELGGIVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIVGPLVGAVAGGFSYNLLRFTNKPLREIAKSSSFLTTN | 266 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 12977612 | 12989833 | - | CrPI670011_05g012750.1 | Cre05g1275 | 497788 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1275 | 266 | SUPERFAMILY | Aquaporin-like | 36 | 256 | IPR023271 | - | |
Cre05g1275 | 266 | NCBIfam | MIP family channel protein | 42 | 243 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre05g1275 | 266 | Gene3D | Glycerol uptake facilitator protein. | 5 | 258 | IPR023271 | - | |
Cre05g1275 | 266 | PANTHER | AQUAPORIN NIP2-1 | 24 | 251 | IPR034294 | - | |
Cre05g1275 | 266 | PRINTS | Major intrinsic protein family signature | 38 | 57 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre05g1275 | 266 | PRINTS | Major intrinsic protein family signature | 113 | 132 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre05g1275 | 266 | PRINTS | Major intrinsic protein family signature | 158 | 176 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre05g1275 | 266 | PRINTS | Major intrinsic protein family signature | 189 | 211 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre05g1275 | 266 | PRINTS | Major intrinsic protein family signature | 76 | 100 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre05g1275 | 266 | PRINTS | Major intrinsic protein family signature | 226 | 246 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre05g1275 | 266 | Pfam | Major intrinsic protein | 33 | 243 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Cre05g1275 | 266 | ProSitePatterns | MIP family signature. | 94 | 102 | IPR022357 | - | |
Cre05g1275 | 266 | CDD | MIP | 38 | 246 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g0662 | Cre-Chr5:5828138 | Cre05g1275 | Cre-Chr5:12977612 | 9.70E-39 | dispersed | |
Cre05g1275 | Cre-Chr5:12977612 | Cre10g1640 | Cre-Chr10:30584880 | 1.40E-54 | dispersed | |
Cre05g1275 | Cre-Chr5:12977612 | Cre04g2013 | Cre-Chr4:37457803 | 4.20E-72 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1275 | K09874 | - | csv:101215315 | 462.225 |