Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1275 ATGGCGACGAAGATCGACGTAATCGAAGAGGAAGAAATCTCAAAGCTCAAAGAAGGCACTCTCATTTCCGCCGTCGCCCGACTCTGTCCCTCGAATTCGGTCGTCATCATCCAAAAGGTTATCGCGGAGGTGATCGGAACGTACTTCGTGATCTTCACCGGATGTGGAGCGGTGGCGGTGAACAAAATTTATGGATCAGTGACGTTTCCGGGAATCTGTGTGGTTTGGGGATTGATTGTGATGGTAATGGTGTATTCGGTGGGACACATCTCTGGAGCGCACTTCAACCCTGCTGTTACTCTCACCTTTGCCCTTTTTCGTCGCTTCCCCTTCTCTCGGGTACCAATATACATAGGAGCTCAAGTGATGGGGTCCCTTCTGGCAAGCTGCACATTGGACCTAATGCTTGAAGTGACCCCGGAAGCCTTCTTTGGGACGGTGCCCGTTGGATCCAATCTCCAATCTTTGGTTCTTGAAATTATCATCACATTTCTCTTGATGTTTGTCGTCTCTGGGGTCTCCACTGATGACAGAGCCGTAGGAGAATTGGGAGGAATTGTGGTTGGAATGACCATTCTCTTGAATGTTTTCGTCGCCGGGCCGATTTCAGGAGCTTCTATGAATCCAGCTAGGAGCATTGGACCAGCAATAGTGAAACGACAGTTCAAAGGATTATGGGTTTACATAGTAGGACCGTTGGTCGGAGCGGTCGCCGGAGGATTTTCCTATAACCTTCTTAGATTCACAAACAAGCCACTGCGAGAGATTGCCAAAAGCAGCTCATTTCTCACCACCAACTAG 801 49.06 MATKIDVIEEEEISKLKEGTLISAVARLCPSNSVVIIQKVIAEVIGTYFVIFTGCGAVAVNKIYGSVTFPGICVVWGLIVMVMVYSVGHISGAHFNPAVTLTFALFRRFPFSRVPIYIGAQVMGSLLASCTLDLMLEVTPEAFFGTVPVGSNLQSLVLEIIITFLLMFVVSGVSTDDRAVGELGGIVVGMTILLNVFVAGPISGASMNPARSIGPAIVKRQFKGLWVYIVGPLVGAVAGGFSYNLLRFTNKPLREIAKSSSFLTTN 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12977612 12989833 - CrPI670011_05g012750.1 Cre05g1275 497788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1275 266 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Cre05g1275 266 NCBIfam MIP family channel protein 42 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1275 266 Gene3D Glycerol uptake facilitator protein. 5 258 IPR023271 -
Cre05g1275 266 PANTHER AQUAPORIN NIP2-1 24 251 IPR034294 -
Cre05g1275 266 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1275 266 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1275 266 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1275 266 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1275 266 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1275 266 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1275 266 Pfam Major intrinsic protein 33 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre05g1275 266 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Cre05g1275 266 CDD MIP 38 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0662 Cre-Chr5:5828138 Cre05g1275 Cre-Chr5:12977612 9.70E-39 dispersed
Cre05g1275 Cre-Chr5:12977612 Cre10g1640 Cre-Chr10:30584880 1.40E-54 dispersed
Cre05g1275 Cre-Chr5:12977612 Cre04g2013 Cre-Chr4:37457803 4.20E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1275 K09874 - csv:101215315 462.225