Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1294 ATGGAGAATTTAATGGGTTTGCTAAGAATCCATGTGTTTAGAGGTGTTAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTTTCAAGATGGGCAAACAGAAATTAAAGACTCGAGTAGTGAAGCAAAACATCAATCCAGAATGGAATGAAGATCTAACTCTATCAATCCAAGATCCAAATCTCCCGGTGAATGTGCTCGTATACGATAGAGACTTATTCTCACTCGACGACAAGATGGGAGATGCAGAGTTCGACGTTCGACCGTTCATGGAAGCGGTGAAGATGAGATTGAACAATCTCCCAAGTGGCACCATCATAACAAAGATTCAACCAAGTAGGGAAAATTGTTTGTCTGAAGAAAGTTGCATAGTTTGGGTAAATGGACAAGTTATTCAGAAAATGTTTCTAAGGTTAAGAAATGTGGAGTCTGGTGAAATTGAGCTGCAGTTGCAATGGATTGATATTCCTGGCTCTAGGGGATTGTAG 498 39.56 MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIFKMGKQKLKTRVVKQNINPEWNEDLTLSIQDPNLPVNVLVYDRDLFSLDDKMGDAEFDVRPFMEAVKMRLNNLPSGTIITKIQPSRENCLSEESCIVWVNGQVIQKMFLRLRNVESGEIELQLQWIDIPGSRGL 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13439096 13440638 - CrPI670011_05g012940.1 Cre05g1294 497807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1294 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Cre05g1294 165 SMART C2_3c 7 102 IPR000008 -
Cre05g1294 165 Pfam C2 domain 6 93 IPR000008 -
Cre05g1294 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Cre05g1294 165 Gene3D C2 domain 4 160 IPR035892 -
Cre05g1294 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Cre05g1294 165 CDD C2_ArfGAP 6 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1397 Cre-Chr1:27232934 Cre05g1294 Cre-Chr5:13439096 2.40E-64 dispersed
Cre04g1745 Cre-Chr4:35518314 Cre05g1294 Cre-Chr5:13439096 1.60E-32 dispersed
Cre05g1294 Cre-Chr5:13439096 Cre09g1896 Cre-Chr9:37696717 1.40E-54 dispersed
Cre05g1294 Cre-Chr5:13439096 Cre06g2297 Cre-Chr6:30918642 2.50E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1294 - - - 0.0