Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1308 ATGGAGTTCCCCCAAGGAATTTTAGCGGCGGCGGTTCTGAGTTTCGCTTTTCTGGGTTTTGTCCGGATGGATCTGGCCTCTGACAGGGCCGCGCTGGTGGGGTTTCGGGCGGCGATGGGTGGCCGGCCCCGATTAGAGTGGAATCTCTCCGATGTATCACCCTGTTCTTGGGCTGGTGTTAACTGTGACAGGAGTGGGGTTTTTGAGCTCCGGCTTCCGGCAATGGGGCTTTCCGGTGAGCTTCCCTTGGGGCTTGGGAATTTGACGCAGTTACAAACTCTTTCTCTGCGGTTTAATGCTCTGTCTGGACGGATTCCGGCGGATTTTGCGAATCTTCGTGGGCTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTCCGGCGAGATTCCGGCGTTTCTGTTCGATTTGCAGAATCTTGTTCGGTTGAACATGGCGGACAACAATTTTTCAGGTGAGATTTCATCTGGGTTCAACAATCTCTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAGTTTACCGGAGTAGTTCCTGACTTAAATCTCACTCTTGAACAATTTAATGTCTCCTTTAATCGATTGAATGGTTCAATTCCCTCGAGGCTCTCTAGTTTTCCGGCGAGTTGTTTTGAGGGGAATTTGCTCTGTGGGGCGCCATTGTTACTCTGTAACTCGACAGCCACCGAGCCTGGTCGAAAGTCGAAGCTCTCAGGCGGGGCGATTGCTGGAATTGTGATCGGTGGTTTGTTTGTTTTGGTGTTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAAGGGAAATCGGAGTCGAAAGAGGGGGTTCGGTCGGCTGGTGAGGTTGGGGTGCCGAGAGAGAAGATGACGACAGTGGAAGGGAGTAGCGAAAGGGTAAGCATAGATCATTTGACTATAGCGAAATCATCAGCGAAGGGCGGGGAAAAGGATAAGAAATTGGTGTTCTTTGGTAATGTGGGAAATGTGTTTGATTTGGAGGACTTGTTGAGGGCGTCGGCGGAGGTCCTCGGGAAGGGGGCGTTCGGGACAGCATATAAGGCGACACTGGAGACGGGGATGGTGGTGGCTGTGAAGCGGTTGAAGGAGATGACTGCGGCGGAGAAGGAGTTCAGGGAGAAAATGGAGGAGGTGGGGAGGATGAAGCATGAAAATTTAGTTCCTCTTAGAGCTTATTATTACAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAATCAGGGAGGACTCCGTTGAATTGGGAAGCAAGGTGTGGCATAGCGCTGGGAGTTAGCCGTGGGATTGATTACCTTCATTCTCAAGGCCCTACCATCTCTCATGGCAACATCAAATCCTCTAATGTTCTCCTCACCAGATCATACGAAGCATGTGTATCCGACTTTGGCCTTGCACAACTAGCCATGTCCCCATCAGCTCCAAGTCGTGTCGCTGGGTACCGAGCCCCAGAGATCACGGATTCTCGAAAGGTATCACAAAAAGCAGATGTTTATAGCTTCGGAGTGTTGTTATTGGAGATGCTAACAGCAAAATCTCCTACACATTCTATCTTCAATGATGAAGCTGTGGACCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAACAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAACTCGCTCTGCAATGTACCGTCCCGTATCCTGATAATCGTCCTGGAACGGACGAGATTGTTCGACGTATCGAAGAACTTTGTCGATCAACCTTGCAAAAACAGAGTGAGGCAATTGACAATGATGGAAATAATGGTATTTCCACACAGTTTCATTCACTAAACTCACCTCATCCACCATCTGCAGAGTAG 1932 48.34 MEFPQGILAAAVLSFAFLGFVRMDLASDRAALVGFRAAMGGRPRLEWNLSDVSPCSWAGVNCDRSGVFELRLPAMGLSGELPLGLGNLTQLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFSGEIPAFLFDLQNLVRLNMADNNFSGEISSGFNNLSRLATLYLQNNQFTGVVPDLNLTLEQFNVSFNRLNGSIPSRLSSFPASCFEGNLLCGAPLLLCNSTATEPGRKSKLSGGAIAGIVIGGLFVLVLILVVLILVCQRKSKGKSESKEGVRSAGEVGVPREKMTTVEGSSERVSIDHLTIAKSSAKGGEKDKKLVFFGNVGNVFDLEDLLRASAEVLGKGAFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGRMKHENLVPLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARCGIALGVSRGIDYLHSQGPTISHGNIKSSNVLLTRSYEACVSDFGLAQLAMSPSAPSRVAGYRAPEITDSRKVSQKADVYSFGVLLLEMLTAKSPTHSIFNDEAVDLPRWVQSVVQEEWTAEVFDEQLLRYQNVEEEMVQLLELALQCTVPYPDNRPGTDEIVRRIEELCRSTLQKQSEAIDNDGNNGISTQFHSLNSPHPPSAE 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13846341 13848536 + CrPI670011_05g013080.1 Cre05g1308 497821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1308 643 SUPERFAMILY L domain-like 46 205 - -
Cre05g1308 643 Gene3D Phosphorylase Kinase; domain 1 306 412 - -
Cre05g1308 643 SUPERFAMILY Protein kinase-like (PK-like) 342 604 IPR011009 -
Cre05g1308 643 ProSiteProfiles Protein kinase domain profile. 338 612 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1308 643 Pfam Protein kinase domain 342 602 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre05g1308 643 Gene3D Transferase(Phosphotransferase) domain 1 413 630 - -
Cre05g1308 643 FunFam Probable inactive receptor kinase RLK902 25 181 - -
Cre05g1308 643 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524(InterPro)
Cre05g1308 643 Coils Coil 371 391 - -
Cre05g1308 643 CDD STKc_IRAK 344 607 - -
Cre05g1308 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 413 618 - -
Cre05g1308 643 PANTHER OS05G0588300 PROTEIN 11 610 IPR050994 -
Cre05g1308 643 Gene3D Ribonuclease Inhibitor 25 205 IPR032675 -
Cre05g1308 643 MobiDBLite consensus disorder prediction 617 643 - -
Cre05g1308 643 SMART LRR_typ_2 112 136 IPR003591 -
Cre05g1308 643 SMART LRR_typ_2 88 111 IPR003591 -
Cre05g1308 643 SMART LRR_typ_2 160 183 IPR003591 -
Cre05g1308 643 Pfam Leucine Rich Repeat 115 135 IPR001611 GO:0005515(InterPro)
Cre05g1308 643 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Cre05g1308 643 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515(InterPro)
Cre05g1308 643 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cre05g1308 643 FunFam pollen receptor-like kinase 1 307 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0573 Cre-Chr1:5030152 Cre05g1308 Cre-Chr5:13846341 2.40E-57 dispersed
Cre05g1308 Cre-Chr5:13846341 Cre09g1674 Cre-Chr9:34483421 1.30E-135 dispersed
Cre05g1308 Cre-Chr5:13846341 Cre01g1386 Cre-Chr1:27109836 4.60E-165 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64147 PF00069 Pkinase 1.00E-37 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1308 - - - 0.0