Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1317 ATGGCGACGCTAATGTCGGGCTCCAGAATTCAACCAGCAGCTTCTGTTCTTTCCTCCTCCATCAAGCGCCATGTGGGTTTTAATTCCCACCTTCGTTCCAATTGCTCGCTTTCTCCTTTTCACCATTCTTCATTCTCCTTCAGGCGCTCTGGACCTAGACGATCTCTCTCTGTATCCATGTCCGTTACCCCTCTAGAAGCCTGCGTCAAAGCTTCCATTACCGTACCCAACAAGCTCGGCGACTGCCCTTTTTGTCAAAGGGTATTACTGACTTTGGAGGAAAAGCATGTACCCTATGACTTAAAGTTGGTAGACCTGTCAAACAAGCCAGAATGGTTCTTAAAAATAAATTCAGAGGGCAAAGTTCCCGTTGTTAAATTTGATGAGCAGTGGGTTGCAGATTCAGATATTATAACACAAACACTGGAAGAGAAGTACCCAAATCCACCTTTAGCTACCCCTCCTGACAAATCTTCAGTAGGATCAAAGATTTTCTCCACATTTATTGCTTTTCTAAAGAGCAAGGATCCTAACGATGGAACAGAACAAGCATTGATTAGCGAGCTAAGTTCTTTCAATGATCACATCAAAGAGAATGGCTCTTTTATCAACGGGAAAGAGATTTCTGCTGCAGACCTGTCACTTGGTCCAAAGTTGTACCATCTAGAAATTGCATTGGGTCACTACAAGAACTGGTCTGTTCCAGACAGTCTTCCTTACGTTAAATCTTACATGAAGAGCATATTTTCAAGAGAATCATTTGCAAACACTCGTGCCCTGCCTGAGGATGTTATTGCTGGTTGGCGTCCGAAGGTTTTTGGTTAA 825 43.39 MATLMSGSRIQPAASVLSSSIKRHVGFNSHLRSNCSLSPFHHSSFSFRRSGPRRSLSVSMSVTPLEACVKASITVPNKLGDCPFCQRVLLTLEEKHVPYDLKLVDLSNKPEWFLKINSEGKVPVVKFDEQWVADSDIITQTLEEKYPNPPLATPPDKSSVGSKIFSTFIAFLKSKDPNDGTEQALISELSSFNDHIKENGSFINGKEISAADLSLGPKLYHLEIALGHYKNWSVPDSLPYVKSYMKSIFSRESFANTRALPEDVIAGWRPKVFG 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14084233 14089239 - CrPI670011_05g013170.1 Cre05g1317 497830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1317 274 Pfam Glutathione S-transferase, N-terminal domain 82 144 IPR004045 -
Cre05g1317 274 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 65 271 IPR044627 GO:0010731(PANTHER)|GO:0033355(InterPro)|GO:0045174(PANTHER)|GO:0045174(InterPro)|GO:0098869(InterPro)
Cre05g1317 274 SFLD Main (cytGST) 81 248 - -
Cre05g1317 274 FunFam Glutathione S-transferase DHAR3 chloroplastic 63 151 - -
Cre05g1317 274 SUPERFAMILY Thioredoxin-like 80 149 IPR036249 -
Cre05g1317 274 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 72 150 IPR004045 -
Cre05g1317 274 SUPERFAMILY GST C-terminal domain-like 145 272 IPR036282 -
Cre05g1317 274 Gene3D Glutaredoxin 63 151 - -
Cre05g1317 274 FunFam Glutathione S-transferase DHAR3, chloroplastic 152 274 - -
Cre05g1317 274 SFLD Glutathione Transferase (cytosolic) 81 248 IPR040079 -
Cre05g1317 274 CDD GST_N_family 82 143 - -
Cre05g1317 274 Gene3D - 152 273 - -
Cre05g1317 274 CDD GST_C_DHAR 151 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1317 K21888 - - csv:101203335 488.804
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1663 Cre-Chr2:29608758 Cre05g1317 Cre-Chr5:14084233 1.30E-71 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g0573 . 1 210 Glutathione S-transferase Gene Family AT4G02520 60.1 5.2e-65 244.6
Cre09g0575 . 1 209 Glutathione S-transferase Gene Family AT4G02520 58.0 6.8e-65 244.2
Cre09g0574 . 1 209 Glutathione S-transferase Gene Family AT4G02520 55.2 2.8e-58 222.2
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT2G02930 61.2 2.8e-66 248.8
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.2 2.0e-64 242.7
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.9 2.5e-59 225.7
Cre09g0575 . 5 206 Glutathione S-transferase Gene Family AT1G02950 53.7 1.6e-60 229.9
Cre09g0573 . 6 215 Glutathione S-transferase Gene Family AT1G02950 55.0 1.8e-59 226.5
Cre09g0574 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.2 7.2e-53 204.5
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.8 5.7e-64 241.1
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 2.4e-62 235.7
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT1G02930 53.3 2.3e-57 219.2
Cre09g0573 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.2 2.3e-65 245.7
Cre09g0575 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 2.2e-63 239.2
Cre09g0574 . 1 210 Glutathione S-transferase Gene Family AT1G02920 54.8 2.5e-59 225.7
Cre09g0575 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 2.8e-68 255.8
Cre09g0573 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.2 1.7e-65 246.5
Cre09g0574 . 1 214 Glutathione S-transferase Gene Family AT2G47730 55.3 3.3e-61 232.3
Cre09g0576 . 1 214 Glutathione S-transferase Gene Family AT3G62760 57.5 9.2e-73 270.4
Cre09g0573 . 20 215 Glutathione S-transferase Gene Family AT1G49860 51.5 2.4e-48 189.5
Cre04g0857 . 3 214 Glutathione S-transferase Gene Family AT3G09270 53.8 3.6e-64 241.9
Cre05g0336 . 2 213 Glutathione S-transferase Gene Family AT3G09270 50.9 8.5e-58 220.7
Cre04g0862 . 1 222 Glutathione S-transferase Gene Family AT3G09270 52.2 2.5e-57 219.2
Cre04g0847 . 224 421 Glutathione S-transferase Gene Family AT3G09270 51.8 9.5e-57 217.2
Cre05g2601 . 1 109 Glutathione S-transferase Gene Family AT1G74590 60.6 3.9e-37 152.1
Cre07g1425 . 1 216 Glutathione S-transferase Gene Family AT1G78380 69.9 8.6e-87 317.0
Cre07g1423 . 1 214 Glutathione S-transferase Gene Family AT1G78380 70.6 1.1e-86 316.6
Cre07g1424 . 1 217 Glutathione S-transferase Gene Family AT1G78380 67.3 6.4e-82 300.8
Cre09g1687 . 4 221 Glutathione S-transferase Gene Family AT1G78380 56.4 8.9e-68 253.8
Cre07g1426 . 1 201 Glutathione S-transferase Gene Family AT1G78380 51.2 8.6e-55 210.7
Cre07g1423 . 7 214 Glutathione S-transferase Gene Family AT1G78370 64.9 3.8e-79 291.6
Cre07g1425 . 7 214 Glutathione S-transferase Gene Family AT1G78370 61.5 1.1e-73 273.5
Cre07g1424 . 7 216 Glutathione S-transferase Gene Family AT1G78370 57.1 3.2e-70 261.9
Cre09g1687 . 7 220 Glutathione S-transferase Gene Family AT1G78370 54.7 5.9e-64 241.1
Cre07g1423 . 1 214 Glutathione S-transferase Gene Family AT1G78340 64.5 1.0e-79 293.5
Cre07g1425 . 1 216 Glutathione S-transferase Gene Family AT1G78340 63.9 6.5e-79 290.8
Cre07g1424 . 1 217 Glutathione S-transferase Gene Family AT1G78340 59.4 6.3e-74 274.2
Cre09g1687 . 4 218 Glutathione S-transferase Gene Family AT1G78340 54.0 3.9e-63 238.4
Cre07g1423 . 1 216 Glutathione S-transferase Gene Family AT1G78320 53.7 4.2e-61 231.5
Cre07g1423 . 1 218 Glutathione S-transferase Gene Family AT1G17180 69.7 8.4e-90 327.0
Cre07g1425 . 1 219 Glutathione S-transferase Gene Family AT1G17180 63.5 1.7e-82 302.8
Cre07g1424 . 1 220 Glutathione S-transferase Gene Family AT1G17180 61.4 1.6e-80 296.2
Cre09g1687 . 4 224 Glutathione S-transferase Gene Family AT1G17180 55.7 1.8e-68 256.1
Cre07g1426 . 1 195 Glutathione S-transferase Gene Family AT1G17180 51.3 4.6e-56 214.9
Cre07g1423 . 3 217 Glutathione S-transferase Gene Family AT1G17190 58.1 2.4e-73 272.3
Cre07g1425 . 2 217 Glutathione S-transferase Gene Family AT1G17190 56.5 7.8e-72 267.3
Cre07g1424 . 2 218 Glutathione S-transferase Gene Family AT1G17190 53.9 6.2e-69 257.7
Cre07g1423 . 3 214 Glutathione S-transferase Gene Family AT3G43800 57.9 5.2e-71 264.6
Cre07g1425 . 3 214 Glutathione S-transferase Gene Family AT3G43800 56.5 4.9e-69 258.1
Cre07g1424 . 3 212 Glutathione S-transferase Gene Family AT3G43800 53.1 5.6e-65 244.6
Cre07g1423 . 4 218 Glutathione S-transferase Gene Family AT1G53680 58.5 6.7e-71 264.2
Cre07g1425 . 2 219 Glutathione S-transferase Gene Family AT1G53680 56.4 1.2e-67 253.4
Cre09g1687 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 1.0e-63 240.4
Cre07g1426 . 1 201 Glutathione S-transferase Gene Family AT1G53680 51.0 7.0e-52 201.1
Cre02g0378 . 55 221 Glutathione S-transferase Gene Family AT2G02390 68.3 1.1e-61 233.4
Cre05g0308 . 61 224 Glutathione S-transferase Gene Family AT2G02390 50.9 7.9e-44 174.1
Cre02g0378 . 14 224 Glutathione S-transferase Gene Family AT2G02380 64.9 3.1e-76 282.0
Cre05g0308 . 18 223 Glutathione S-transferase Gene Family AT2G02380 52.6 1.6e-56 216.5
Cre07g1161 . 35 271 Glutathione S-transferase Gene Family AT5G41210 68.4 1.5e-92 336.3
Cre07g1161 . 35 271 Glutathione S-transferase Gene Family AT5G41240 66.7 1.7e-89 327.4
Cre10g2181 . 1 235 Glutathione S-transferase Gene Family AT5G02780 66.5 1.9e-87 319.3
Cre10g2180 . 13 232 Glutathione S-transferase Gene Family AT5G02780 68.9 2.8e-83 305.4
Cre02g1689 . 75 294 Glutathione S-transferase Gene Family AT5G02780 65.8 3.8e-80 295.0
Cre02g1689 . 29 292 Glutathione S-transferase Gene Family AT3G55040 61.1 1.3e-85 313.5
Cre10g2181 . 6 233 Glutathione S-transferase Gene Family AT3G55040 60.1 2.5e-78 289.3
Cre10g2180 . 3 234 Glutathione S-transferase Gene Family AT3G55040 58.4 9.7e-78 287.3
Cre10g2181 . 1 235 Glutathione S-transferase Gene Family AT5G02790 68.9 7.8e-94 340.5
Cre10g2180 . 7 232 Glutathione S-transferase Gene Family AT5G02790 69.2 2.0e-89 325.9
Cre02g1689 . 67 294 Glutathione S-transferase Gene Family AT5G02790 62.9 4.0e-82 301.6
Cre02g1663 . 1 212 Glutathione S-transferase Gene Family AT1G19570 65.7 1.5e-80 296.2
Cre05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G19570 58.9 3.4e-72 268.5
Cre02g1663 . 1 211 Glutathione S-transferase Gene Family AT1G75270 69.8 5.4e-86 314.3
Cre05g1317 . 65 272 Glutathione S-transferase Gene Family AT1G75270 62.2 4.3e-75 278.1
Cre05g1317 . 9 274 Glutathione S-transferase Gene Family AT5G16710 68.3 7.7e-103 370.5
Cre02g1663 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 5.4e-72 268.1
Cre11g2016 . 510 765 Glutathione S-transferase Gene Family AT1G77290 69.5 7.2e-104 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010539 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31