Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1321 ATGAAGCGAGGCCACACCCATCAATCCTCAAATTCCGCCGCCGCAGCCGCTGGCAACCCCAAGACATGGGCGGTCGAGGATGAGGAAGACGACGACAAGCATCTAGCTGCTCTTGGGTACAATGTCCGGTCGTCGGACATGGCGGACGTAGCTCTGAAACTGGAACAGCTAGAAATGGTAATGGGTTTGTCGGAAGAAGATGGAATTTCTCACCTCTCTTCCAATACAGTCCATTACAATCCCTCCGATGTTTCTTCTTGGGTTCAAAGCATGCTCGCTGAACTCAATACTCCGCTTCAATCCCAAGGAATAACCCACGATCCTGTTCTTGCCATAGCTGAATCCACTTCCTCCTCCATCGCCGCCGCCTTCACCGACGATTCTGAGTACGATCTCAGAGCCATTCCTGGAGTTGCTGCTTTCCCACAAATCGATTCCACCAACCCCAGAAAGCGATTCAAGAAATCAGATTCCGAATCGCTTCTTGTTACTGCATCTTCTTCTTCTTCTTCGTCGTCGTCGGAGCAGTCGCGCTCGGTGGTTCTGGTGGATTCCGCCGAGACTGGCGTCCGTCTGGTCCACAGCCTTCTCGCCTGCGCCGACGCCGTGCACACAAACAATCTCAACCTTGCCGAGGCTCTACTAAAACACATCAGAATCCTCGTTGAAGCTCAGGCCGGCGCTATGAGAAAAGTCGCCGCCTATTTCGCTCAAGCCCTCTGTCGCCGGATTTACAGATTCTACCCACAAAAGCCCTTCGATTATTCATCTTCATACACCGATCTTCTCCAAATGCATTTCTATGAATCTTGCCCCTATCTGAAATTCGCCCATTTCACTGCCAATCAAGCCATTCTCGAATCCGTTGGTTCTGCTGGTACCGTCCACGTCGTCGATTTCAACCTCCAGCAAGGCCACCAATGGCCGCCGTTGATTCAGGCCTTCGCACTCCGACCAGGTGGGCCTCCGGCGTTTCATCTTACTGGAATCCATCCCCCGCCGGAGGAAAATTCCACCGACGGATTACAGGAAGTGGGTTCGAAATTGGCGCAATTCGCGGATAAATTCGGCGTGAAATTCGAATTTCGAGGGTTCTTCTGCAACAATTTGGCCGATCTGGAACCGTCAATACTCAATTTAGAAACAGAAACCGTCGCTATAAACTCCATTTTCGAGCTCCACCGGCTACTGGCCAATCCGGGCGCGATTGAAAAAGCTCTAACAACAATCAAAGAACTTAACCCCAAAATCGTCACCGTCGTGGAGCAGGTCGCCGACCACAACGGACCGTCGTTCGTAGACCGATTCACAGAAGCTCTACACTATTATTCGAGCTTATTCGATTCGTTAGAAGGGTCGCCGGCAGGGGAGGAGGATGTGGTGAGGTCAGAGGAATATTTAGGGAGACAAATCTGCAACGTAGTGGCGTGTGAAGGTTCCGACCGTGTCGAGCGTCATGAAACGGTGGCGCAGTGGCGGAGCCGGTTACGCTCGAGTGGGTTCGAGATGGTTCATATGGGTTCGAACGCTTTCAAGCAGGCCAGTACTTTGCTGGCGGCTCTGTTCGGCGGTGGAAATGGATACAGAGTTGAAGAGAATAATGGGAGTTTGACGTTGGGATGGCACACTCGGCCGCTCATCGCCACTTCGGCCTGGACGCTGGCCGGAGGCGGCGACAGCGGCGTGTCGGCTCGGCCGAGTTCAGGACAGATCTGA 1716 52.97 MKRGHTHQSSNSAAAAAGNPKTWAVEDEEDDDKHLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQSMLAELNTPLQSQGITHDPVLAIAESTSSSIAAAFTDDSEYDLRAIPGVAAFPQIDSTNPRKRFKKSDSESLLVTASSSSSSSSSEQSRSVVLVDSAETGVRLVHSLLACADAVHTNNLNLAEALLKHIRILVEAQAGAMRKVAAYFAQALCRRIYRFYPQKPFDYSSSYTDLLQMHFYESCPYLKFAHFTANQAILESVGSAGTVHVVDFNLQQGHQWPPLIQAFALRPGGPPAFHLTGIHPPPEENSTDGLQEVGSKLAQFADKFGVKFEFRGFFCNNLADLEPSILNLETETVAINSIFELHRLLANPGAIEKALTTIKELNPKIVTVVEQVADHNGPSFVDRFTEALHYYSSLFDSLEGSPAGEEDVVRSEEYLGRQICNVVACEGSDRVERHETVAQWRSRLRSSGFEMVHMGSNAFKQASTLLAALFGGGNGYRVEENNGSLTLGWHTRPLIATSAWTLAGGGDSGVSARPSSGQI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 14285757 14287472 + CrPI670011_05g013210.1 Cre05g1321 497834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1321 571 FunFam DELLA protein GAI 30 95 - -
Cre05g1321 571 Pfam Transcriptional regulator DELLA protein N terminal 32 98 IPR021914 -
Cre05g1321 571 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 171 552 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Cre05g1321 571 Pfam GRAS domain family 192 553 IPR005202 -
Cre05g1321 571 SMART DELLA_2 32 105 - -
Cre05g1321 571 MobiDBLite consensus disorder prediction 1 29 - -
Cre05g1321 571 ProSiteProfiles GRAS family profile. 183 553 IPR005202 -
Cre05g1321 571 Gene3D - 31 95 IPR038088 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1321 Cre-Chr5:14285757 Cre09g1895 Cre-Chr9:37683600 7.20E-170 dispersed
Cre05g1321 Cre-Chr5:14285757 Cre02g2309 Cre-Chr2:36606469 8.00E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53695 PF03514 GRAS 5.60E-124 CL0063 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1321 K14494 - csv:101203095 974.541