Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1345 ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAATCTCATCAACGCTGGTCCTGATCATCTCCGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAGGCGGCTGTAGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCGGCTACTGGCGATGGACCACCGCTGAAGGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTCGCGTCCAACGATGGTGGAGCCAATCGGCGAATTAAGATTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAGGCGAAAGGGAGTAAAGGAATCGCCTCTACTGTCGATGAGTCGACTCGGCGATTCTACTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACAGCGGAGGTTTCTCCTCCTCCGATGCCGTCTGTTTTATTCCGATCGGAATCCACTTCGGTACTGAAATCCAGGGGCCAGGACGGCGGCGTAGTGGCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGCGTTACGTGCCCAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTTGGGTTCAGGCCCAATAACGACACGTGCAATACAGTTTTGGGCCTTGATTTTTCAGCCTGA 921 52.23 MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSVASNDGGANRRIKIRCRFKRSAVKAKGSKGIASTVDESTRRFYSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPPMPSVLFRSESTSVLKSRGQDGGVVAIPQSELALELTLGMEPALRAQHVIPMKKRKIEADVGFRPNNDTCNTVLGLDFSA 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15126862 15127875 - CrPI670011_05g013450.1 Cre05g1345 497858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1345 306 MobiDBLite consensus disorder prediction 185 215 - -
Cre05g1345 306 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cre05g1345 306 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 267 - GO:0010468(PANTHER)
Cre05g1345 306 MobiDBLite consensus disorder prediction 199 215 - -
Cre05g1345 306 PIRSF AS2 1 301 IPR017414 -
Cre05g1345 306 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1345 Cre-Chr5:15126862 Cre05g2445 Cre-Chr5:35851156 1.10E-52 dispersed
Cre05g1345 Cre-Chr5:15126862 Cre06g2350 Cre-Chr6:31443051 8.30E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53697 PF03195 LOB 1.80E-24 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1345 - - - 0.0