Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1345 | ATGCGGATGAGTTGTAATGGTTGCAGAGTACTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATCAAGACTCCTGAATCTCAGGCTAACGCTACCGTTTTTCTCGCTAAGTTCTATGGCCGTGCTGGTCTCATGAATCTCATCAACGCTGGTCCTGATCATCTCCGTCCTGCGATTTTTAGATCTCTTCTCTACGAGGCTTGTGGCCGGATTGTGAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAGCTTTGTCAGGCGGCTGTAGAGGCCGTACTTAAAGGTGCTCCGATCACGCCGATCAACTCCGAGGCAGCGGCTACTGGCGATGGACCACCGCTGAAGGCCTACGACATTCGTCACGTTTCCAAGGATGAAAACTCCGTCGCGTCCAACGATGGTGGAGCCAATCGGCGAATTAAGATTCGGTGCCGGTTCAAGCGGTCGGCTGTGAAGGCGAAAGGGAGTAAAGGAATCGCCTCTACTGTCGATGAGTCGACTCGGCGATTCTACTCTACCGAGTTGAACAGGTCGTCGAGTGGTGAGTCGTCGTTGAGTCACCAATCCGACTCGCGGCATCTCGAGAACGAGAGTAAAGAAACCGAGAGCATGATTTCAGTGGAGACAGCGGAGGTTTCTCCTCCTCCGATGCCGTCTGTTTTATTCCGATCGGAATCCACTTCGGTACTGAAATCCAGGGGCCAGGACGGCGGCGTAGTGGCAATTCCGCAAAGTGAATTAGCTCTAGAACTAACCCTGGGGATGGAGCCGGCGTTACGTGCCCAGCACGTGATTCCAATGAAGAAGCGAAAGATAGAGGCCGACGTTGGGTTCAGGCCCAATAACGACACGTGCAATACAGTTTTGGGCCTTGATTTTTCAGCCTGA | 921 | 52.23 | MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSEAAATGDGPPLKAYDIRHVSKDENSVASNDGGANRRIKIRCRFKRSAVKAKGSKGIASTVDESTRRFYSTELNRSSSGESSLSHQSDSRHLENESKETESMISVETAEVSPPPMPSVLFRSESTSVLKSRGQDGGVVAIPQSELALELTLGMEPALRAQHVIPMKKRKIEADVGFRPNNDTCNTVLGLDFSA | 306 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 15126862 | 15127875 | - | CrPI670011_05g013450.1 | Cre05g1345 | 497858 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1345 | 306 | MobiDBLite | consensus disorder prediction | 185 | 215 | - | - | |
Cre05g1345 | 306 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 102 | IPR004883 | - | |
Cre05g1345 | 306 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 267 | - | GO:0010468(PANTHER) | |
Cre05g1345 | 306 | MobiDBLite | consensus disorder prediction | 199 | 215 | - | - | |
Cre05g1345 | 306 | PIRSF | AS2 | 1 | 301 | IPR017414 | - | |
Cre05g1345 | 306 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre05g1345 | Cre-Chr5:15126862 | Cre05g2445 | Cre-Chr5:35851156 | 1.10E-52 | dispersed | |
Cre05g1345 | Cre-Chr5:15126862 | Cre06g2350 | Cre-Chr6:31443051 | 8.30E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53697 | PF03195 | LOB | 1.80E-24 | No_clan | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1345 | - | - | - | 0.0 |