Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1354 ATGCCGGAAGAAACCATTCCGATAGACTACGTCATGGAAGCCGCCTCCGGACCTCACTTCTCTGGCCTCAGACTCGATGGACGTCTCTCCTCTCCGCCGTCTTCCTCAACTTCCTCTCCGGCTCACCGCTCTTCTCTTTCCGCTTCCTTTGGACAGGCCGATGCCAACTCTCCTAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACCGCTTCTGGGAAGACGACGGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTGGTCAATCAGGACTCGTTTTACCGCGGGTTGACAGCTGAGGAACTAGAACGCGTGCACGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTGTAGATTGCATCGAGAAGCTTAAGAGTGGCCAACCTTACCATGTCCCAATTTATGATTTTAAAACTCATCAACGCTGTGTAGATAGTTTTCGACAGGTAAATGCATCTAATGTTATCATCTTGGAAGGTATTTTGGTTTTCCATGACCAAAGAGTCCGCAATCTGATGAATATGAAGATATTTGTTGACACAGATCCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACAGTAGAGAGGGGCAGGGACATTAACTCTGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCATTCTGCCGTCAAAGAAGTACGCTGATGTGATCATACCGCGTGGGGGTGATAACCATGTTGCAATTGATCTGATTGTGCAACACATCCATACTAAGTTAGGCCAGCACGACCTATGCAAAATATACCCTAATGTCACTGTCATTCAGTCAACATTTCAGATAAGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAGCATGATTTTGTATTCTATTCAGATCGACTTATTCGTCTGGTTGTGGAGCACGGCCTTGGCCATTTGCCATTTACTGAAAAGCAAGTAATCACTCCTACGGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATCGTTCGAAGTGGTGAAAGCATGGAAAATGCATTGCGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTTTGATTCACCGTGAGGGAGACAATGGGAAGCAGCTGATATATGAGAAATTACCCAGTGATATATCAGAGCGACATGTCCTGCTCCTAGATCCCGTTCTCGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTCATACAGAAGGGAGTTCCAGAAGCACACATCATATTCCTCAACTTGATCTCTGCCCCTGAGGGAATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAGATTGTTACTTCTGAGATCGATGTTGGATTGGACGAAAATTATCGTGTCATACCCGGTCTGGGGGAATTTGGTGATCGTTACTTCGGTACCGACGATTAA 1449 45.0 MPEETIPIDYVMEAASGPHFSGLRLDGRLSSPPSSSTSSPAHRSSLSASFGQADANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLVNQDSFYRGLTAEELERVHEYNFDHPDSFDTEQLVDCIEKLKSGQPYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDPDVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFILPSKKYADVIIPRGGDNHVAIDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPSDISERHVLLLDPVLATGNSANQAIDLLIQKGVPEAHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVGLDENYRVIPGLGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15353197 15362927 - CrPI670011_05g013540.1 Cre05g1354 497867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1354 482 ProSiteProfiles UvrC family, homology region profile. 167 250 IPR001162 GO:0009381(InterPro)
Cre05g1354 482 PRINTS Uridine kinase signature 91 102 - -
Cre05g1354 482 PRINTS Uridine kinase signature 207 218 - -
Cre05g1354 482 PRINTS Uridine kinase signature 193 203 - -
Cre05g1354 482 PRINTS Uridine kinase signature 61 78 - -
Cre05g1354 482 PRINTS Uridine kinase signature 136 151 - -
Cre05g1354 482 PRINTS Uridine kinase signature 229 242 - -
Cre05g1354 482 MobiDBLite consensus disorder prediction 28 55 - -
Cre05g1354 482 PANTHER URIDINE KINASE 57 412 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Cre05g1354 482 FunFam Uridine kinase 58 264 - -
Cre05g1354 482 MobiDBLite consensus disorder prediction 22 55 - -
Cre05g1354 482 CDD UMPK 63 261 IPR000764 -
Cre05g1354 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Cre05g1354 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Cre05g1354 482 Gene3D - 265 480 IPR029057 -
Cre05g1354 482 FunFam Uridine kinase 265 480 - -
Cre05g1354 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Cre05g1354 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Cre05g1354 482 Gene3D - 57 264 IPR027417 -
Cre05g1354 482 NCBIfam uridine kinase 60 261 IPR000764 -
Cre05g1354 482 CDD PRTases_typeI 338 453 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1354 K00876 - - csv:101207261 929.858
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0318 Cre-Chr1:2603589 Cre05g1354 Cre-Chr5:15353197 1.30E-208 dispersed
Cre04g0882 Cre-Chr4:27489277 Cre05g1354 Cre-Chr5:15353197 5.10E-15 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g2136 . 30 180 PRT Gene Family AT1G80050 75.5 7.0e-62 233.8
Cre10g0535 . 30 180 PRT Gene Family AT1G80050 75.5 7.0e-62 233.8
Cre08g1285 . 33 168 PRT Gene Family AT1G80050 80.9 8.8e-57 216.9
Cre08g1585 . 112 261 PRT Gene Family AT1G80050 70.0 7.5e-56 213.8
Cre08g1285 . 1 148 PRT Gene Family AT5G11160 81.1 4.6e-64 241.1
Cre09g2136 . 8 145 PRT Gene Family AT5G11160 75.4 2.3e-55 212.2
Cre08g1585 . 90 227 PRT Gene Family AT5G11160 73.2 2.5e-54 208.8
Cre10g0535 . 8 145 PRT Gene Family AT5G11160 71.0 8.9e-52 200.3
Cre08g1585 . 83 264 PRT Gene Family AT1G27450 82.4 1.3e-80 296.2
Cre09g2136 . 7 180 PRT Gene Family AT1G27450 74.7 1.0e-72 270.0
Cre10g0535 . 1 180 PRT Gene Family AT1G27450 71.1 1.2e-70 263.1
Cre08g1285 . 11 168 PRT Gene Family AT1G27450 73.4 3.8e-64 241.5
Cre11g0875 . 73 557 PRT Gene Family AT2G16570 85.2 6.3e-243 837.0
Cre11g0875 . 73 557 PRT Gene Family AT4G34740 86.0 1.7e-243 839.0
Cre11g0875 . 28 530 PRT Gene Family AT4G38880 70.4 1.8e-199 692.6
Cre08g1585 . 83 264 PRT Gene Family AT1G27450 82.4 1.3e-80 296.2
Cre09g2136 . 7 180 PRT Gene Family AT1G27450 74.7 1.0e-72 270.0
Cre10g0535 . 1 180 PRT Gene Family AT1G27450 71.1 1.2e-70 263.1
Cre08g1285 . 11 168 PRT Gene Family AT1G27450 73.4 3.8e-64 241.5
Cre09g2136 . 30 180 PRT Gene Family AT1G80050 75.5 7.0e-62 233.8
Cre10g0535 . 30 180 PRT Gene Family AT1G80050 75.5 7.0e-62 233.8
Cre08g1285 . 33 168 PRT Gene Family AT1G80050 80.9 8.8e-57 216.9
Cre08g1585 . 112 261 PRT Gene Family AT1G80050 70.0 7.5e-56 213.8
Cre10g0535 . 5 97 PRT Gene Family AT4G22570 87.1 3.3e-44 174.5
Cre09g2136 . 6 104 PRT Gene Family AT4G22570 82.8 5.6e-44 173.7
Cre08g1585 . 88 179 PRT Gene Family AT4G22570 82.6 1.1e-39 159.5
Cre08g1285 . 11 100 PRT Gene Family AT4G22570 78.9 2.3e-37 151.8
Cre10g0535 . 1 96 PRT Gene Family AT4G12440 84.4 5.3e-41 163.7
Cre09g2136 . 1 96 PRT Gene Family AT4G12440 84.4 9.1e-41 162.9
Cre08g1585 . 83 178 PRT Gene Family AT4G12440 79.2 9.4e-38 152.9
Cre08g1285 . 4 99 PRT Gene Family AT4G12440 78.1 3.6e-37 151.0
Cre08g1285 . 1 148 PRT Gene Family AT5G11160 81.1 4.6e-64 241.1
Cre09g2136 . 8 145 PRT Gene Family AT5G11160 75.4 2.3e-55 212.2
Cre08g1585 . 90 227 PRT Gene Family AT5G11160 73.2 2.5e-54 208.8
Cre10g0535 . 8 145 PRT Gene Family AT5G11160 71.0 8.9e-52 200.3
Cre08g0668 . 1 186 PRT Gene Family AT1G71750 65.0 1.9e-69 259.2
Cre01g0318 . 46 498 PRT Gene Family AT1G55810 85.5 2.5e-226 781.6
Cre05g1354 . 19 482 PRT Gene Family AT1G55810 73.5 1.5e-199 692.6
Cre01g0318 . 95 503 PRT Gene Family AT3G27440 76.5 1.7e-184 642.5
Cre05g1354 . 80 482 PRT Gene Family AT3G27440 75.4 9.6e-180 626.7
Cre05g1354 . 1 482 PRT Gene Family AT3G27190 85.7 2.4e-246 848.2
Cre01g0318 . 42 497 PRT Gene Family AT3G27190 75.5 7.4e-208 720.3
Cre04g0882 . 3 288 PRT Gene Family AT3G53900 66.1 2.0e-107 386.0
Cre01g0318 . 32 498 PRT Gene Family AT4G26510 84.7 7.1e-232 800.0
Cre05g1354 . 11 482 PRT Gene Family AT4G26510 75.8 7.7e-210 726.9
Cre05g1354 . 1 482 PRT Gene Family AT5G40870 86.3 1.4e-246 849.0
Cre01g0318 . 42 500 PRT Gene Family AT5G40870 74.2 1.4e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61