Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1360 ATGGTTCAACCGACAAATCCATCCAAATTGCGATGGGGGGAGCTAGAAGACGACGATGGGGATCTTGATTTTCTTCTTCCGCCAAAGCAAATTATCGGGCCAGACGAAAATGGGCTGAAGAAAATTGTCGAGTATCAGTTTAACGAAGATGGTAACAAGGTCAAAATCACAACGACCACTCGTACACGCAAGCTTGCCCATGCTCGCCTTAGTAAACATGCCGTGGAGCGCCGATCTTGGGCCAAGTTCGGCGATGCTGTCCATGAAGATGTTGGCAGTCGGCTCACTATGGTCTCCACCGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCCAAGGTTGCTGGAGACCCGCTAGCTCAACTTGGTAAAGGTGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGACCACTGGACCTCAAGGTGCCCTTACAAAGACCTGGCACCACAAGCCGATGGATTGGATAAGCCTGTTGCACCAGAGGCTACAACTGCTGCTCCTGGTGCAACGAAGGGAGCATATGTTCCTCCAGGTATGAGAGCAGGGGCGGAGAGGACTGGAACTGACATGAGGCGCAGAAATGATGAAAACTCTGTTCGTGTTACCAACCTTTCAGAGGACACTAGAGAGCCTGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTTGCTGTTGATCAAAAGACTGGCATGAGCAGAGGGTTTGGTTTTGTAAACTTTGTGAATCGCGAGGATGCACAAAGATCAATTAACAAGCTTAATGGATATGGTTACGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCGACTTAA 867 49.71 MVQPTNPSKLRWGELEDDDGDLDFLLPPKQIIGPDENGLKKIVEYQFNEDGNKVKITTTTRTRKLAHARLSKHAVERRSWAKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQADGLDKPVAPEATTAAPGATKGAYVPPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTGMSRGFGFVNFVNREDAQRSINKLNGYGYDNLILRVEWATPRAT 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15583818 15585462 + CrPI670011_05g013600.1 Cre05g1360 497873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1360 288 Pfam RNA recognition motif 209 275 IPR000504 GO:0003723(InterPro)
Cre05g1360 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723(InterPro)
Cre05g1360 288 FunFam Eukaryotic translation initiation factor 3 subunit G 172 288 - -
Cre05g1360 288 CDD eIF3G 37 156 IPR024675 -
Cre05g1360 288 SMART rrm1_1 208 281 IPR000504 GO:0003723(InterPro)
Cre05g1360 288 Gene3D - 179 288 IPR012677 -
Cre05g1360 288 MobiDBLite consensus disorder prediction 172 195 - -
Cre05g1360 288 PIRSF Transl_init_eIF-3_RNA-bind 1 288 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cre05g1360 288 CDD RRM_eIF3G_like 208 283 IPR034240 -
Cre05g1360 288 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Cre05g1360 288 SUPERFAMILY RNA-binding domain, RBD 205 286 IPR035979 GO:0003676(InterPro)
Cre05g1360 288 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 287 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Cre05g1360 288 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 43 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1592 Cre-Chr1:28986270 Cre05g1360 Cre-Chr5:15583818 4.20E-158 dispersed
Cre05g1360 Cre-Chr5:15583818 Cre11g0630 Cre-Chr11:3486476 1.40E-09 dispersed
Cre05g1360 Cre-Chr5:15583818 Cre09g0106 Cre-Chr9:1312808 2.90E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1360 K03248 - csv:101207022 548.125