Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1433 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTTGACGCCGACCATGACGACTCCTCTTCTTGGTCCAGAACCAACCACCACAACGACGACGCCATCGCCATTTCCGCCGCCGGCTCCATTTCCTCCTTCAAATCCATCCTCGAATCCGACTGGTATATCAACTCTACTACTCCTCTTAATCCTTCTCACCAAGATTTCCATTCCCTTTCTTCTCACCCCGACATTCGAGACCTTCCTTTCTCCTCCAATCCTTCTGATAACTTCCTCTTACACCCTATAGATTCCTCCTCTTCTTGCTCTCCTTCTCACGCTTTTGCTCTCGATCCTTCCCATTCCCACTCCAGCTTGCCTCCTCACAAATCATCTTGTTTCTCTTCTCTTCTTAACGTCGTTTGCAGCAATAATTTTGATAATGCCTTCGATTTAGGCGGTGAGAGTGGTCTGCTTGGATCTTACCCAGGGAACCAAGCTTCCAATTCCTCCGTTTTGATGGGATTCACTGGCATTTCCTCTCTTCCTCAAATCGGTAATCAGGAGCTCAGCTTAAACAACTCGGAGTTTCCGGCAACTCGGTTGCTTCCGGTCGCCGATAACCCTCCTGCATTCGGAGCTGGATTTAATCCGGTGGCTGCTTTCGAGAGCTTCGATGCCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCGAAGTGTTCCCGCAGGTCGGTGCGCAGCCGACGCTGTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCCGGACCTGATAAACTAGAGAGTTTGGAGGTTTCGGGTTTTAAATTAGGAGAAGGCTCAATGTGGACGCCGAATTTGGAGAGCCTGAGGAAGATGACCGGCGACGAGGACATTGAGGACGGCAGCGTGGATGTTTCTCGCTTGAATTACGATTCCGACGAACCCAATGAGTATAATAAGCAAGAGGACAATGTTAACACTAAAAACTGCGGAAGTAATTCCAATGCCAACAGTACGGTAACTGGCGGAGACCAGAAGGGGAAGAAGAAGGGGCTGCCGGCGAAAAATCTCATGGCAGAGCGGCGGCGGAGAAAGAAACTGAATGATAGACTTTACATGCTTAGGTCCGTGGTACCCAAGATAAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGACTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTCCATAATGAACTTGAGTCTACTCCTCCTGGTTCTTTGTTGCAGCCCTCTGCGAGCTTTCACCCTTTGACGCCGACGCTGCCAACTCTTCCCTGTCGTGTCAAAGAGGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAATACCCAGCCTGCCAGGGTTGAAGTCCGGGTCAGAGAAGGCAGAGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTCTTGCTATCCACCATGAGGGCTCTGGATAACCTTGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGATGTCTTTCGCGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTGCCTGAGCAAATAAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGCATTATATAA 1617 49.66 MLPKSTGILWLDADHDDSSSWSRTNHHNDDAIAISAAGSISSFKSILESDWYINSTTPLNPSHQDFHSLSSHPDIRDLPFSSNPSDNFLLHPIDSSSSCSPSHAFALDPSHSHSSLPPHKSSCFSSLLNVVCSNNFDNAFDLGGESGLLGSYPGNQASNSSVLMGFTGISSLPQIGNQELSLNNSEFPATRLLPVADNPPAFGAGFNPVAAFESFDACGNALFQNRSKVLRPLEVFPQVGAQPTLFQKRAAHRVGSAGPDKLESLEVSGFKLGEGSMWTPNLESLRKMTGDEDIEDGSVDVSRLNYDSDEPNEYNKQEDNVNTKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESTPPGSLLQPSASFHPLTPTLPTLPCRVKEELCPSSLSSPNTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGII 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17564623 17567500 - CrPI670011_05g014330.1 Cre05g1433 497946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1433 538 MobiDBLite consensus disorder prediction 318 340 - -
Cre05g1433 538 CDD ACT_UUR-ACR-like 467 527 - -
Cre05g1433 538 FunFam BHLH transcription factor 343 411 - -
Cre05g1433 538 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 350 415 IPR036638 GO:0046983(InterPro)
Cre05g1433 538 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983(InterPro)
Cre05g1433 538 ProSiteProfiles ACT domain profile. 466 538 IPR002912 -
Cre05g1433 538 CDD bHLH_AtAMS_like 350 414 - -
Cre05g1433 538 Coils Coil 390 410 - -
Cre05g1433 538 Pfam Plant bHLH transcription factor, ACT-like domain 455 528 IPR054502 -
Cre05g1433 538 MobiDBLite consensus disorder prediction 305 348 - -
Cre05g1433 538 Pfam Helix-loop-helix DNA-binding domain 354 396 IPR011598 GO:0046983(InterPro)
Cre05g1433 538 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 304 533 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cre05g1433 538 Gene3D - 341 410 IPR036638 GO:0046983(InterPro)
Cre05g1433 538 SMART finulus 353 402 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g0694 Cre-Chr3:5862860 Cre05g1433 Cre-Chr5:17564623 2.20E-139 dispersed
Cre04g1437 Cre-Chr4:33194742 Cre05g1433 Cre-Chr5:17564623 4.20E-32 dispersed
Cre05g1433 Cre-Chr5:17564623 Cre11g1904 Cre-Chr11:30779070 1.00E-32 dispersed
Cre05g1433 Cre-Chr5:17564623 Cre08g1131 Cre-Chr8:24491564 9.20E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53702 PF00010 HLH 2.20E-09 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1433 - - - 0.0