Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1512 ATGTCCTTCTCTGCTGCAACCGCACGCCACCACGGTACTCTATCTTCTGCCGCAGCCACAGCCACGCCATTGCCCACTGCCTTCAGCGCCAGCTGCTCGACGTCGAGCCCCATCTCCCACTACAGAAAAGCCCTAATTCTCAAGGAAATTTCAATGGGGAAGAACGAATTTCTAACCCCTAAAGCAATTGCAAACAGAATCAAGGCAAAAGGGCTACAGAAGCTGAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCACCAGCGCCAGATGCAGATCTTTGGCCAAAATCCCCATCGTATTGTTGAAGGCTACTCTGAAGAGTTTGAGAGTTCTTTCATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTGGTCTATAATGAATACATTAACGACAGACATCATATTCATATGAATTCAACTCAGTGGGCTACTCTTACTGAGTTTGTAAAACATTTGGGTCGAACTGGGCAATGTAAAGTAGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACGCTTTTTAAAGAGAGAATGAAGAATAAGAGGATGCGGGCCGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTATCTGTTGAGCCTTTGGAGGCTGAACAAACGAGAGAGTTGAAATTGGATAGTGGGGTTAAGCTAGGATTTGCTTTGGGAACATCAACAAAATTGAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGAAGAGACATATGAGACTGCCAAGGGGAAAGCTAAAGAGACTTCCAAAAACAGGATGGGTGGTGGTGGTCTGTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATAACTGGCTTTGTGAGGGAATAACTGTAAAGATTATGAGCAAGGATTTGGCTGAGAAGGGATACTATAAACAGAAGGGAGTTGTACGAAAAGTGATTGATAAATATGTTGGAGAGATCGAAATGCTCGATGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGGTTAGTAAGGATAGTAAATGGAGCGTATCGTGGATCAAATGCTAGGTTGTTAGAGGGCAATGCAGAGGGATGTCTGATGCCAGCGGTTGAGGGAACCCTCCCTCTCCCACCCCAAAATGAATTTGATCGCACATTCTACATCTTTCATGTATCCATGAATGTGTTTGATACATATGAAGATGTTGAGTATGAGCATCACGCACGGAAGAAGAAACTTCACCCTTTTGCCTGGGTTTTCGCTACGCTCGACTCCATTTGCTGGAATTTTGAGATTTGGGTTCTGCTGCTGCTGGCCTATTTCTTCGAAGAAGCTGGAATTTTTGTACTGATAGTGATGTCTATGAACAACAATAACCCGCCGAAGAGCCTTGGGGTGGCTTGTTCGTCGCCTTTTGGAAATTCTGGGATGGTTCCACCATCTATGGCAGCAAATTCCACATCATTTTCTCAGCCGCAAGCTCAAGCTCAAGCTCAATTAGGAGCTGGGTTTCAAAATCCATTTCCGCTGTGCACCGCTCAGGTTCTTGCTCAAGCTCAGTTAAAGGCTCACGCTCATGCCCAAGCTCAAGCACAGGCAGCTCACGCCCAGTTTCAAGCTCAGTTACAAGCTCAAGGGCTGTCCCTAACTCAGAGCCAGAATGTTGGTGGTGGGAACATGGGTTCGCCTTCACCAGGATTTTCCACACCAGGCCTTGCAGGTGTCAAGCGAATTCCTCAAAAGCCACCAGTTCGGCCTCCTATTCTTTCTCCTGGTACCACATTTTCGCCGTTGAAAACAATGGAAATTACGCCTGCTGCTCGTAAAAAGAAGCAGAAGCTGCCTGAGAAGCAGCTTCAAGATAAAGTTGCTGCAATCTTGCCCGAATCTGCTCTCTACACTCAGCTGCTTGAGTTTGAGTCTCGTGTTGATGCTGCTCTCGCAAGAAAGAAAGTTGACATCCATGAAGCGCTTAAAAACCCACCTTGCATTCAGAAAACTCTTCGAATTTATGTCTTCAACACATTTGCAAATCAAGTTAACACAATACCCAAAAAACCAAATGCCGATCCTCCTACCTGGACTCTTAAGATAATAGGTAGGATCTTGGAAGACGGGATAGATCCTGATCATCCTGGGGTGGTACAAAGATCAAACCCTTTGTACCCAAAATTTTCATCTTTCTTCAAGAGAGTAACCATTTCCTTGGACCAGAGGCTATATCCAGATAGTCACATCATAGTATGGGAGAATGCTCGATCACCTGCACCTCATGAGGGCTTTGAGGTGAAGAGAAAAGGAGATAAAGAATTTTCAGTTAACATTCGGTTAGAAATGAATTATATTCCAGAGAAATTCAAGTTGTCGCCTGCTTTGATGGAAGTTCTTGGTATTGAAGTTGATACTCGCCCAAGAATAATAGCTGCAATCTGGCATTATGTGAAGGCTAGGAAACTTCAGAATCCCAACGATCCATCTTTCTTTCATTGTGATCCACCTCTCCAGAAGGTATTTGGGGAAGACAAATTGAAATTTACCATGGTTTCACAGAGAATATCACAGCACTTGTTTCCTCCACAGCCTATACATCTGGAGCATAAAATTAAGCTTTCGGGGAATAGTCCAGCAGGTACAGCATGTTACGATGTGTTGGTCGATGTGCCTTTCCCAATTCACAGGGAATTGTCTGCTCTATTAGCCAATGCAGAGAAGAACAAGGAGATTGATGCATGCGATGAAGCAATTTGTACCGCTATAAGGAAAATTCACGAGCATCGACGGAGACGTGCATTTTTCCTTGGGTTCAGTCAGTCACCGGTGGAGTTTATTGATGCCTTGATTGAATCTCAAAGCAAGGATCTAAAACTTCTTGCAGGAGAAGCTAGTCGAAATGCTGAAAAGGAGCGACGATCGGATTTCTTCAATCAACCATGGGTTGAAGATGCTGTCATCCGGTACATAAATCGAAAACCAGCAACAGGCAGCGATGCACCTGGAAGTACATGA 3162 44.62 MSFSAATARHHGTLSSAAATATPLPTAFSASCSTSSPISHYRKALILKEISMGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFESSFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPLASVSVEPLEAEQTRELKLDSGVKLGFALGTSTKLKEKGESSRVVFDEEETYETAKGKAKETSKNRMGGGGLSALEALMREEEMKKEKLNRKDNWLCEGITVKIMSKDLAEKGYYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLEGNAEGCLMPAVEGTLPLPPQNEFDRTFYIFHVSMNVFDTYEDVEYEHHARKKKLHPFAWVFATLDSICWNFEIWVLLLLAYFFEEAGIFVLIVMSMNNNNPPKSLGVACSSPFGNSGMVPPSMAANSTSFSQPQAQAQAQLGAGFQNPFPLCTAQVLAQAQLKAHAHAQAQAQAAHAQFQAQLQAQGLSLTQSQNVGGGNMGSPSPGFSTPGLAGVKRIPQKPPVRPPILSPGTTFSPLKTMEITPAARKKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKVDIHEALKNPPCIQKTLRIYVFNTFANQVNTIPKKPNADPPTWTLKIIGRILEDGIDPDHPGVVQRSNPLYPKFSSFFKRVTISLDQRLYPDSHIIVWENARSPAPHEGFEVKRKGDKEFSVNIRLEMNYIPEKFKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDPPLQKVFGEDKLKFTMVSQRISQHLFPPQPIHLEHKIKLSGNSPAGTACYDVLVDVPFPIHRELSALLANAEKNKEIDACDEAICTAIRKIHEHRRRRAFFLGFSQSPVEFIDALIESQSKDLKLLAGEASRNAEKERRSDFFNQPWVEDAVIRYINRKPATGSDAPGST 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19826932 19834023 + CrPI670011_05g015120.1 Cre05g1512 498025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1512 1053 Gene3D - 111 211 IPR038254 -
Cre05g1512 1053 Gene3D - 335 388 - -
Cre05g1512 1053 Pfam SWIB/MDM2 domain 836 908 IPR003121 -
Cre05g1512 1053 Pfam Domain of Kin17 curved DNA-binding protein 103 228 IPR019447 -
Cre05g1512 1053 Coils Coil 205 234 - -
Cre05g1512 1053 Coils Coil 308 328 - -
Cre05g1512 1053 FunFam DNA/RNA-binding protein KIN17, putative 112 211 - -
Cre05g1512 1053 Gene3D - 389 419 IPR014722 -
Cre05g1512 1053 SMART Kin17_mid_2 103 229 IPR019447 -
Cre05g1512 1053 FunFam DNA/RNA-binding protein kin17-like 335 388 - -
Cre05g1512 1053 CDD SWIB_like 840 908 - -
Cre05g1512 1053 SUPERFAMILY SWIB/MDM2 domain 828 918 IPR036885 -
Cre05g1512 1053 SMART swib_2 834 913 IPR019835 -
Cre05g1512 1053 ProSiteProfiles SWIB/MDM2 domain profile. 833 910 IPR003121 -
Cre05g1512 1053 Gene3D SWIB/MDM2 domain 830 915 IPR036885 -
Cre05g1512 1053 SUPERFAMILY beta-beta-alpha zinc fingers 77 117 IPR036236 -
Cre05g1512 1053 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 52 413 IPR037321 GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER)
Cre05g1512 1053 Pfam KN17 SH3-like C-terminal domain 327 380 IPR041330 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g0818 Cre-Chr1:9298422 Cre05g1512 Cre-Chr5:19826932 7.90E-169 dispersed
Cre01g1229 Cre-Chr1:25389113 Cre05g1512 Cre-Chr5:19826932 1.10E-185 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53704 PF10357 Kin17_mid 5.00E-46 CL0123 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1512 K11650 - csv:101216251 996.882