Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre05g1512 | ATGTCCTTCTCTGCTGCAACCGCACGCCACCACGGTACTCTATCTTCTGCCGCAGCCACAGCCACGCCATTGCCCACTGCCTTCAGCGCCAGCTGCTCGACGTCGAGCCCCATCTCCCACTACAGAAAAGCCCTAATTCTCAAGGAAATTTCAATGGGGAAGAACGAATTTCTAACCCCTAAAGCAATTGCAAACAGAATCAAGGCAAAAGGGCTACAGAAGCTGAGATGGTATTGCCAGATGTGTCAAAAGCAGTGCCGGGATGAGAATGGCTTTAAATGTCACTGTATGAGTGAAAGCCACCAGCGCCAGATGCAGATCTTTGGCCAAAATCCCCATCGTATTGTTGAAGGCTACTCTGAAGAGTTTGAGAGTTCTTTCATGGAGCACATTAAGCGTAGCCATCGGTTCAGTCGCGTGGCAGCTACAGTGGTCTATAATGAATACATTAACGACAGACATCATATTCATATGAATTCAACTCAGTGGGCTACTCTTACTGAGTTTGTAAAACATTTGGGTCGAACTGGGCAATGTAAAGTAGAGGAGACTCCCAAGGGTTGGTTCATTACTTACATAGATAGAGATTCAGAGACGCTTTTTAAAGAGAGAATGAAGAATAAGAGGATGCGGGCCGATTTAGCTGAAGAAGAGAAGCAAGAGAGAGAGATAAAGAGGCAAATTGAGAGGGCTGAGCAATTAGCACCTTTGGCTTCTGTATCTGTTGAGCCTTTGGAGGCTGAACAAACGAGAGAGTTGAAATTGGATAGTGGGGTTAAGCTAGGATTTGCTTTGGGAACATCAACAAAATTGAAGGAGAAAGGAGAGAGTTCCAGGGTGGTTTTTGATGAGGAAGAGACATATGAGACTGCCAAGGGGAAAGCTAAAGAGACTTCCAAAAACAGGATGGGTGGTGGTGGTCTGTCAGCTTTGGAGGCATTGATGAGAGAAGAAGAGATGAAGAAGGAGAAGCTTAATAGGAAGGATAACTGGCTTTGTGAGGGAATAACTGTAAAGATTATGAGCAAGGATTTGGCTGAGAAGGGATACTATAAACAGAAGGGAGTTGTACGAAAAGTGATTGATAAATATGTTGGAGAGATCGAAATGCTCGATGGCAAGCATGTGTTGAGAGTTGATCAAGAAGAATTAGAAACAGTGATACCACAAATTGGTGGGTTAGTAAGGATAGTAAATGGAGCGTATCGTGGATCAAATGCTAGGTTGTTAGAGGGCAATGCAGAGGGATGTCTGATGCCAGCGGTTGAGGGAACCCTCCCTCTCCCACCCCAAAATGAATTTGATCGCACATTCTACATCTTTCATGTATCCATGAATGTGTTTGATACATATGAAGATGTTGAGTATGAGCATCACGCACGGAAGAAGAAACTTCACCCTTTTGCCTGGGTTTTCGCTACGCTCGACTCCATTTGCTGGAATTTTGAGATTTGGGTTCTGCTGCTGCTGGCCTATTTCTTCGAAGAAGCTGGAATTTTTGTACTGATAGTGATGTCTATGAACAACAATAACCCGCCGAAGAGCCTTGGGGTGGCTTGTTCGTCGCCTTTTGGAAATTCTGGGATGGTTCCACCATCTATGGCAGCAAATTCCACATCATTTTCTCAGCCGCAAGCTCAAGCTCAAGCTCAATTAGGAGCTGGGTTTCAAAATCCATTTCCGCTGTGCACCGCTCAGGTTCTTGCTCAAGCTCAGTTAAAGGCTCACGCTCATGCCCAAGCTCAAGCACAGGCAGCTCACGCCCAGTTTCAAGCTCAGTTACAAGCTCAAGGGCTGTCCCTAACTCAGAGCCAGAATGTTGGTGGTGGGAACATGGGTTCGCCTTCACCAGGATTTTCCACACCAGGCCTTGCAGGTGTCAAGCGAATTCCTCAAAAGCCACCAGTTCGGCCTCCTATTCTTTCTCCTGGTACCACATTTTCGCCGTTGAAAACAATGGAAATTACGCCTGCTGCTCGTAAAAAGAAGCAGAAGCTGCCTGAGAAGCAGCTTCAAGATAAAGTTGCTGCAATCTTGCCCGAATCTGCTCTCTACACTCAGCTGCTTGAGTTTGAGTCTCGTGTTGATGCTGCTCTCGCAAGAAAGAAAGTTGACATCCATGAAGCGCTTAAAAACCCACCTTGCATTCAGAAAACTCTTCGAATTTATGTCTTCAACACATTTGCAAATCAAGTTAACACAATACCCAAAAAACCAAATGCCGATCCTCCTACCTGGACTCTTAAGATAATAGGTAGGATCTTGGAAGACGGGATAGATCCTGATCATCCTGGGGTGGTACAAAGATCAAACCCTTTGTACCCAAAATTTTCATCTTTCTTCAAGAGAGTAACCATTTCCTTGGACCAGAGGCTATATCCAGATAGTCACATCATAGTATGGGAGAATGCTCGATCACCTGCACCTCATGAGGGCTTTGAGGTGAAGAGAAAAGGAGATAAAGAATTTTCAGTTAACATTCGGTTAGAAATGAATTATATTCCAGAGAAATTCAAGTTGTCGCCTGCTTTGATGGAAGTTCTTGGTATTGAAGTTGATACTCGCCCAAGAATAATAGCTGCAATCTGGCATTATGTGAAGGCTAGGAAACTTCAGAATCCCAACGATCCATCTTTCTTTCATTGTGATCCACCTCTCCAGAAGGTATTTGGGGAAGACAAATTGAAATTTACCATGGTTTCACAGAGAATATCACAGCACTTGTTTCCTCCACAGCCTATACATCTGGAGCATAAAATTAAGCTTTCGGGGAATAGTCCAGCAGGTACAGCATGTTACGATGTGTTGGTCGATGTGCCTTTCCCAATTCACAGGGAATTGTCTGCTCTATTAGCCAATGCAGAGAAGAACAAGGAGATTGATGCATGCGATGAAGCAATTTGTACCGCTATAAGGAAAATTCACGAGCATCGACGGAGACGTGCATTTTTCCTTGGGTTCAGTCAGTCACCGGTGGAGTTTATTGATGCCTTGATTGAATCTCAAAGCAAGGATCTAAAACTTCTTGCAGGAGAAGCTAGTCGAAATGCTGAAAAGGAGCGACGATCGGATTTCTTCAATCAACCATGGGTTGAAGATGCTGTCATCCGGTACATAAATCGAAAACCAGCAACAGGCAGCGATGCACCTGGAAGTACATGA | 3162 | 44.62 | MSFSAATARHHGTLSSAAATATPLPTAFSASCSTSSPISHYRKALILKEISMGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQIFGQNPHRIVEGYSEEFESSFMEHIKRSHRFSRVAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKERMKNKRMRADLAEEEKQEREIKRQIERAEQLAPLASVSVEPLEAEQTRELKLDSGVKLGFALGTSTKLKEKGESSRVVFDEEETYETAKGKAKETSKNRMGGGGLSALEALMREEEMKKEKLNRKDNWLCEGITVKIMSKDLAEKGYYKQKGVVRKVIDKYVGEIEMLDGKHVLRVDQEELETVIPQIGGLVRIVNGAYRGSNARLLEGNAEGCLMPAVEGTLPLPPQNEFDRTFYIFHVSMNVFDTYEDVEYEHHARKKKLHPFAWVFATLDSICWNFEIWVLLLLAYFFEEAGIFVLIVMSMNNNNPPKSLGVACSSPFGNSGMVPPSMAANSTSFSQPQAQAQAQLGAGFQNPFPLCTAQVLAQAQLKAHAHAQAQAQAAHAQFQAQLQAQGLSLTQSQNVGGGNMGSPSPGFSTPGLAGVKRIPQKPPVRPPILSPGTTFSPLKTMEITPAARKKKQKLPEKQLQDKVAAILPESALYTQLLEFESRVDAALARKKVDIHEALKNPPCIQKTLRIYVFNTFANQVNTIPKKPNADPPTWTLKIIGRILEDGIDPDHPGVVQRSNPLYPKFSSFFKRVTISLDQRLYPDSHIIVWENARSPAPHEGFEVKRKGDKEFSVNIRLEMNYIPEKFKLSPALMEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSFFHCDPPLQKVFGEDKLKFTMVSQRISQHLFPPQPIHLEHKIKLSGNSPAGTACYDVLVDVPFPIHRELSALLANAEKNKEIDACDEAICTAIRKIHEHRRRRAFFLGFSQSPVEFIDALIESQSKDLKLLAGEASRNAEKERRSDFFNQPWVEDAVIRYINRKPATGSDAPGST | 1053 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19826932 | 19834023 | + | CrPI670011_05g015120.1 | Cre05g1512 | 498025 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre05g1512 | 1053 | Gene3D | - | 111 | 211 | IPR038254 | - | |
Cre05g1512 | 1053 | Gene3D | - | 335 | 388 | - | - | |
Cre05g1512 | 1053 | Pfam | SWIB/MDM2 domain | 836 | 908 | IPR003121 | - | |
Cre05g1512 | 1053 | Pfam | Domain of Kin17 curved DNA-binding protein | 103 | 228 | IPR019447 | - | |
Cre05g1512 | 1053 | Coils | Coil | 205 | 234 | - | - | |
Cre05g1512 | 1053 | Coils | Coil | 308 | 328 | - | - | |
Cre05g1512 | 1053 | FunFam | DNA/RNA-binding protein KIN17, putative | 112 | 211 | - | - | |
Cre05g1512 | 1053 | Gene3D | - | 389 | 419 | IPR014722 | - | |
Cre05g1512 | 1053 | SMART | Kin17_mid_2 | 103 | 229 | IPR019447 | - | |
Cre05g1512 | 1053 | FunFam | DNA/RNA-binding protein kin17-like | 335 | 388 | - | - | |
Cre05g1512 | 1053 | CDD | SWIB_like | 840 | 908 | - | - | |
Cre05g1512 | 1053 | SUPERFAMILY | SWIB/MDM2 domain | 828 | 918 | IPR036885 | - | |
Cre05g1512 | 1053 | SMART | swib_2 | 834 | 913 | IPR019835 | - | |
Cre05g1512 | 1053 | ProSiteProfiles | SWIB/MDM2 domain profile. | 833 | 910 | IPR003121 | - | |
Cre05g1512 | 1053 | Gene3D | SWIB/MDM2 domain | 830 | 915 | IPR036885 | - | |
Cre05g1512 | 1053 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 117 | IPR036236 | - | |
Cre05g1512 | 1053 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 52 | 413 | IPR037321 | GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER) | |
Cre05g1512 | 1053 | Pfam | KN17 SH3-like C-terminal domain | 327 | 380 | IPR041330 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g0818 | Cre-Chr1:9298422 | Cre05g1512 | Cre-Chr5:19826932 | 7.90E-169 | dispersed | |
Cre01g1229 | Cre-Chr1:25389113 | Cre05g1512 | Cre-Chr5:19826932 | 1.10E-185 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
53704 | PF10357 | Kin17_mid | 5.00E-46 | CL0123 | Cre | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre05g1512 | K11650 | - | csv:101216251 | 996.882 |