Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1530 ATGTTTTTCCCTTGCTCCAGCGGCGGCGATGGTGGCGGAGGACTGTCGGCGTATCATCATGCTGACATATCATCTGTTTCCGGGTCTGATATATTTGGGAATTTTCACGGCGGCGATATGGAGGTAAGTGGGTTTTTGGGGATGAAGACAGAGGTGGATGCGGCGGCGGCGGTGGAAGCGGACGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACGCATCAAGGATGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 507 46.15 MFFPCSSGGDGGGGLSAYHHADISSVSGSDIFGNFHGGDMEVSGFLGMKTEVDAAAAVEADGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20665358 20667862 - CrPI670011_05g015300.1 Cre05g1530 498043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1530 168 Pfam WRKY DNA -binding domain 89 145 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1530 168 ProSiteProfiles WRKY domain profile. 83 148 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1530 168 Gene3D WRKY domain 72 148 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1530 168 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 148 IPR044810 GO:0003700(InterPro)
Cre05g1530 168 SUPERFAMILY WRKY DNA-binding domain 80 147 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1530 168 FunFam WRKY transcription factor 57 74 148 - -
Cre05g1530 168 SMART WRKY_cls 88 147 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1530 Cre-Chr5:20665358 Cre07g1901 Cre-Chr7:34464057 1.60E-45 dispersed
Cre05g1530 Cre-Chr5:20665358 Cre06g1206 Cre-Chr6:5917369 1.30E-29 transposed
Cre05g1530 Cre-Chr5:20665358 Cre07g1140 Cre-Chr7:23292946 1.30E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53706 PF03106 WRKY 3.20E-26 CL0274 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1530 - - - 0.0