Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1530 ATGTTTTTCCCTTGCTCCAGCGGCGGCGATGGTGGCGGAGGACTGTCGGCGTATCATCATGCTGACATATCATCTGTTTCCGGGTCTGATATATTTGGGAATTTTCACGGCGGCGATATGGAGGTAAGTGGGTTTTTGGGGATGAAGACAGAGGTGGATGCGGCGGCGGCGGTGGAAGCGGACGGCGGCGGAAAAAAGAAAGGGGAGAAGAAGGTGAGGAAACCAAGATATGCTTTTCAGACAAGAAGCCAAGTTGACATTCTTGACGATGGATATCGTTGGAGAAAATACGGTCAAAAAGCTGTCAAAAACAACAAGTTTCCTAGGAGCTATTATAGATGCACGCATCAAGGATGCAATGTGAAGAAGCAAGTGCAAAGGCTAACAAGAGATGAAGGGGTGGTGGTGACAACATATGAAGGAATGCACACACACTCCATTGATAAGCCAACAGACAACTTTGAACAAATCTTGAGTAGAATGCAGATTTATAGTACTCCTTTTTGA 507 46.15 MFFPCSSGGDGGGGLSAYHHADISSVSGSDIFGNFHGGDMEVSGFLGMKTEVDAAAAVEADGGGKKKGEKKVRKPRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTRDEGVVVTTYEGMHTHSIDKPTDNFEQILSRMQIYSTPF 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20665358 20667862 - CrPI670011_05g015300.1 Cre05g1530 498043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1530 168 Pfam WRKY DNA -binding domain 89 145 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1530 168 ProSiteProfiles WRKY domain profile. 83 148 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1530 168 Gene3D WRKY domain 72 148 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1530 168 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 148 IPR044810 GO:0003700(InterPro)
Cre05g1530 168 SUPERFAMILY WRKY DNA-binding domain 80 147 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cre05g1530 168 FunFam WRKY transcription factor 57 74 148 - -
Cre05g1530 168 SMART WRKY_cls 88 147 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1530 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1530 Cre-Chr5:20665358 Cre07g1901 Cre-Chr7:34464057 1.60E-45 dispersed
Cre05g1530 Cre-Chr5:20665358 Cre06g1206 Cre-Chr6:5917369 1.30E-29 transposed
Cre05g1530 Cre-Chr5:20665358 Cre07g1140 Cre-Chr7:23292946 1.30E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1147 . Blo11g00612 Bda01g01064 . Bpe02g01307 . . . Cmo14g00740 . Cma11g01514 Cma14g00727 Car11g01302 Car14g00663 . Cpe03g00631 . . . . . . . . Cla11g00902 . . . Clacu11g0932 Cmu11g0779 . . . Cone2ag0036 Cone16ag1003 . . Chy06g01543 Cme06g01785 . . Bda07g01384 . . Bpe11g01486 . . . . . . . . . . . Bhi01g02098 . . . Hepe02g1696 . . Cla05g01424 Cam05g1512 Cec05g1527 Cco05g1560 Clacu05g1519 Cmu05g1427 Cre05g1530 . Csa03g02485 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre02g0607 . 156 404 WRKY Transcription Factor Family AT2G04880 57.9 3.1e-78 289.7
Cre03g0335 . 236 476 WRKY Transcription Factor Family AT5G56270 53.6 8.7e-69 258.8
Cre05g2563 . 18 491 WRKY Transcription Factor Family AT2G03340 52.3 4.7e-120 428.7
Cre11g0945 . 12 503 WRKY Transcription Factor Family AT2G03340 52.3 4.9e-117 418.7
Cre03g0335 . 228 489 WRKY Transcription Factor Family AT2G03340 52.9 8.7e-66 248.4
Cre05g2563 . 108 491 WRKY Transcription Factor Family AT1G13960 56.5 1.1e-99 360.5
Cre11g0945 . 139 503 WRKY Transcription Factor Family AT1G13960 51.3 2.1e-82 303.1
Cre03g0335 . 227 517 WRKY Transcription Factor Family AT1G13960 50.8 6.0e-69 258.5
Cre10g2352 . 167 394 WRKY Transcription Factor Family AT1G13960 53.7 2.3e-65 246.5
Cre10g0687 . 206 456 WRKY Transcription Factor Family AT1G13960 51.7 1.3e-63 240.7
Cre10g0687 . 25 573 WRKY Transcription Factor Family AT4G26640 52.0 1.4e-135 480.3
Cre05g2563 . 198 447 WRKY Transcription Factor Family AT4G26640 52.5 2.6e-65 246.9
Cre11g0945 . 230 469 WRKY Transcription Factor Family AT4G26640 51.0 4.4e-65 246.1
Cre03g0335 . 225 475 WRKY Transcription Factor Family AT5G07100 57.7 1.4e-68 256.5
Cre10g2352 . 152 381 WRKY Transcription Factor Family AT5G07100 57.3 3.0e-68 255.4
Cre02g2227 . 234 467 WRKY Transcription Factor Family AT5G07100 51.1 2.2e-58 222.6
Cre06g2110 . 192 513 WRKY Transcription Factor Family AT4G30935 60.3 1.9e-99 360.1
Cre03g0335 . 234 583 WRKY Transcription Factor Family AT2G38470 58.1 4.8e-96 349.0
Cre10g0629 . 353 637 WRKY Transcription Factor Family AT2G38470 52.1 4.2e-68 256.1
Cre05g2563 . 198 446 WRKY Transcription Factor Family AT2G38470 55.4 2.6e-65 246.9
Cre10g0687 . 214 456 WRKY Transcription Factor Family AT2G38470 51.7 4.5e-62 236.1
Cre03g0335 . 236 476 WRKY Transcription Factor Family AT4G26440 52.5 8.2e-65 245.4
Cre05g1530 . 73 164 WRKY Transcription Factor Family AT3G01970 77.2 1.3e-38 156.4
Cre07g1901 . 101 195 WRKY Transcription Factor Family AT3G01970 72.6 6.5e-38 154.1
Cre06g2502 . 202 362 WRKY Transcription Factor Family AT1G62300 55.9 3.6e-41 166.8
Cre05g1165 . 216 328 WRKY Transcription Factor Family AT1G62300 69.9 5.2e-40 162.9
Cre05g1165 . 65 327 WRKY Transcription Factor Family AT1G68150 52.9 1.7e-58 223.8
Cre02g0538 . 294 391 WRKY Transcription Factor Family AT1G68150 75.5 4.3e-38 156.0
Cre04g1796 . 332 429 WRKY Transcription Factor Family AT1G68150 74.5 6.2e-37 152.1
Cre04g1796 . 42 576 WRKY Transcription Factor Family AT4G22070 50.8 3.9e-109 392.5
Cre05g1165 . 208 328 WRKY Transcription Factor Family AT4G22070 66.1 5.6e-39 159.5
Cre06g2502 . 193 362 WRKY Transcription Factor Family AT4G22070 53.2 1.4e-37 154.8
Cre04g1796 . 134 577 WRKY Transcription Factor Family AT4G04450 50.2 1.2e-95 347.4
Cre02g0538 . 108 516 WRKY Transcription Factor Family AT4G04450 51.5 3.6e-89 325.9
Cre06g2502 . 202 371 WRKY Transcription Factor Family AT4G04450 54.7 9.7e-42 168.3
Cre02g0538 . 293 381 WRKY Transcription Factor Family AT1G18860 76.4 2.3e-37 154.1
Cre05g0068 . 25 202 WRKY Transcription Factor Family AT2G44745 54.5 3.6e-45 178.7
Cre02g0437 . 114 233 WRKY Transcription Factor Family AT2G44745 62.4 7.3e-38 154.5
Cre04g1218 . 141 225 WRKY Transcription Factor Family AT2G44745 78.8 1.1e-36 150.6
Cre02g0437 . 140 247 WRKY Transcription Factor Family AT4G39410 78.8 1.3e-45 180.6
Cre04g1218 . 134 244 WRKY Transcription Factor Family AT4G39410 73.0 4.0e-42 169.1
Cre07g1140 . 78 174 WRKY Transcription Factor Family AT5G41570 80.4 1.3e-43 173.3
Cre04g2045 . 85 258 WRKY Transcription Factor Family AT4G18170 57.0 4.0e-45 179.1
Cre01g0235 . 118 220 WRKY Transcription Factor Family AT4G18170 74.8 1.1e-39 161.0
Cre05g0812 . 167 341 WRKY Transcription Factor Family AT5G49520 50.8 2.9e-40 163.3
Cre01g0235 . 108 266 WRKY Transcription Factor Family AT5G49520 54.3 1.6e-38 157.5
Cre07g1140 . 67 176 WRKY Transcription Factor Family AT1G64000 78.2 2.5e-45 179.1
Cre08g0967 . 109 288 WRKY Transcription Factor Family AT1G69310 59.6 3.4e-51 199.1
Cre06g1206 . 135 231 WRKY Transcription Factor Family AT1G69310 76.3 3.9e-39 159.1
Cre04g2045 . 77 250 WRKY Transcription Factor Family AT1G29860 57.6 2.4e-49 193.0
Cre01g0235 . 102 217 WRKY Transcription Factor Family AT1G29860 68.1 1.7e-39 160.2
Cre07g1901 . 97 195 WRKY Transcription Factor Family AT5G13080 82.8 3.5e-44 174.9
Cre05g1530 . 70 166 WRKY Transcription Factor Family AT5G13080 81.4 2.1e-41 165.6
Cre05g2813 . 1 294 WRKY Transcription Factor Family AT4G31550 59.7 1.7e-81 299.7
Cre06g2248 . 1 224 WRKY Transcription Factor Family AT4G31550 50.4 1.8e-51 199.9
Cre05g2813 . 1 350 WRKY Transcription Factor Family AT2G24570 61.1 2.3e-104 375.9
Cre06g2248 . 1 272 WRKY Transcription Factor Family AT2G24570 50.2 2.6e-68 256.1
Cre09g0718 . 211 356 WRKY Transcription Factor Family AT2G24570 54.7 9.4e-42 167.9
Cre07g0436 . 1 338 WRKY Transcription Factor Family AT2G30590 53.2 3.3e-86 315.8
Cre09g0718 . 16 366 WRKY Transcription Factor Family AT2G30590 53.8 9.6e-86 314.3
Cre05g2205 . 213 372 WRKY Transcription Factor Family AT2G30590 59.3 2.0e-46 183.7
Cre02g1125 . 156 281 WRKY Transcription Factor Family AT2G30590 68.2 5.3e-44 175.6
Cre04g1325 . 120 283 WRKY Transcription Factor Family AT2G30590 57.2 7.0e-44 175.3
Cre05g2813 . 170 331 WRKY Transcription Factor Family AT2G30590 56.1 1.1e-41 167.9
Cre06g2248 . 120 262 WRKY Transcription Factor Family AT2G30590 56.5 5.5e-41 165.6
Cre09g0718 . 16 366 WRKY Transcription Factor Family AT5G28650 50.4 7.6e-79 291.2
Cre07g0436 . 1 338 WRKY Transcription Factor Family AT5G28650 51.0 1.3e-78 290.4
Cre04g1325 . 133 284 WRKY Transcription Factor Family AT5G28650 61.8 6.7e-43 171.8
Cre02g1125 . 177 283 WRKY Transcription Factor Family AT5G28650 72.0 1.1e-40 164.5
Cre04g2145 . 196 317 WRKY Transcription Factor Family AT1G30650 82.0 3.4e-55 213.0
Cre05g0206 . 131 227 WRKY Transcription Factor Family AT1G30650 65.5 9.3e-37 151.8
Cre03g1149 . 149 280 WRKY Transcription Factor Family AT4G01250 59.3 5.9e-38 155.2
Cre05g0206 . 135 235 WRKY Transcription Factor Family AT5G52830 73.5 3.3e-40 162.9
Cre03g1149 . 3 277 WRKY Transcription Factor Family AT2G34830 50.3 9.4e-61 231.5
Cre04g2145 . 90 317 WRKY Transcription Factor Family AT2G34830 55.3 4.1e-56 216.1
Cre05g0206 . 132 227 WRKY Transcription Factor Family AT2G34830 67.9 1.5e-37 154.5
Cre03g0976 . 47 247 WRKY Transcription Factor Family AT1G29280 53.6 2.1e-52 203.0
Cre07g0618 . 42 300 WRKY Transcription Factor Family AT3G58710 55.2 1.1e-46 184.1
Cre02g0607 . 156 404 WRKY Transcription Factor Family AT2G04880 57.9 3.1e-78 289.7
Cre05g2813 . 1 294 WRKY Transcription Factor Family AT4G31550 59.7 1.7e-81 299.7
Cre06g2248 . 1 224 WRKY Transcription Factor Family AT4G31550 50.4 1.8e-51 199.9
Cre05g0068 . 25 202 WRKY Transcription Factor Family AT2G44745 54.5 3.6e-45 178.7
Cre02g0437 . 114 233 WRKY Transcription Factor Family AT2G44745 62.4 7.3e-38 154.5
Cre04g1218 . 141 225 WRKY Transcription Factor Family AT2G44745 78.8 1.1e-36 150.6
Cre02g0437 . 140 247 WRKY Transcription Factor Family AT4G39410 78.8 1.3e-45 180.6
Cre04g1218 . 134 244 WRKY Transcription Factor Family AT4G39410 73.0 4.0e-42 169.1
Cre04g2145 . 196 317 WRKY Transcription Factor Family AT1G30650 82.0 3.4e-55 213.0
Cre05g0206 . 131 227 WRKY Transcription Factor Family AT1G30650 65.5 9.3e-37 151.8
Cre05g2813 . 1 350 WRKY Transcription Factor Family AT2G24570 61.1 2.3e-104 375.9
Cre06g2248 . 1 272 WRKY Transcription Factor Family AT2G24570 50.2 2.6e-68 256.1
Cre09g0718 . 211 356 WRKY Transcription Factor Family AT2G24570 54.7 9.4e-42 167.9
Cre03g0335 . 236 476 WRKY Transcription Factor Family AT5G56270 53.6 8.7e-69 258.8
Cre10g0687 . 25 573 WRKY Transcription Factor Family AT4G26640 52.0 1.4e-135 480.3
Cre05g2563 . 198 447 WRKY Transcription Factor Family AT4G26640 52.5 2.6e-65 246.9
Cre11g0945 . 230 469 WRKY Transcription Factor Family AT4G26640 51.0 4.4e-65 246.1
Cre07g0436 . 1 338 WRKY Transcription Factor Family AT2G30590 53.2 3.3e-86 315.8
Cre09g0718 . 16 366 WRKY Transcription Factor Family AT2G30590 53.8 9.6e-86 314.3
Cre05g2205 . 213 372 WRKY Transcription Factor Family AT2G30590 59.3 2.0e-46 183.7
Cre02g1125 . 156 281 WRKY Transcription Factor Family AT2G30590 68.2 5.3e-44 175.6
Cre04g1325 . 120 283 WRKY Transcription Factor Family AT2G30590 57.2 7.0e-44 175.3
Cre05g2813 . 170 331 WRKY Transcription Factor Family AT2G30590 56.1 1.1e-41 167.9
Cre06g2248 . 120 262 WRKY Transcription Factor Family AT2G30590 56.5 5.5e-41 165.6
Cre03g1149 . 149 280 WRKY Transcription Factor Family AT4G01250 59.3 5.9e-38 155.2
Cre07g1140 . 78 174 WRKY Transcription Factor Family AT5G41570 80.4 1.3e-43 173.3
Cre03g0335 . 225 475 WRKY Transcription Factor Family AT5G07100 57.7 1.4e-68 256.5
Cre10g2352 . 152 381 WRKY Transcription Factor Family AT5G07100 57.3 3.0e-68 255.4
Cre02g2227 . 234 467 WRKY Transcription Factor Family AT5G07100 51.1 2.2e-58 222.6
Cre05g0206 . 135 235 WRKY Transcription Factor Family AT5G52830 73.5 3.3e-40 162.9
Cre04g2045 . 85 258 WRKY Transcription Factor Family AT4G18170 57.0 4.0e-45 179.1
Cre01g0235 . 118 220 WRKY Transcription Factor Family AT4G18170 74.8 1.1e-39 161.0
Cre05g2563 . 18 491 WRKY Transcription Factor Family AT2G03340 52.3 4.7e-120 428.7
Cre11g0945 . 12 503 WRKY Transcription Factor Family AT2G03340 52.3 4.9e-117 418.7
Cre03g0335 . 228 489 WRKY Transcription Factor Family AT2G03340 52.9 8.7e-66 248.4
Cre04g1796 . 42 576 WRKY Transcription Factor Family AT4G22070 50.8 3.9e-109 392.5
Cre05g1165 . 208 328 WRKY Transcription Factor Family AT4G22070 66.1 5.6e-39 159.5
Cre06g2502 . 193 362 WRKY Transcription Factor Family AT4G22070 53.2 1.4e-37 154.8
Cre06g2110 . 192 513 WRKY Transcription Factor Family AT4G30935 60.3 1.9e-99 360.1
Cre03g0335 . 234 583 WRKY Transcription Factor Family AT2G38470 58.1 4.8e-96 349.0
Cre10g0629 . 353 637 WRKY Transcription Factor Family AT2G38470 52.1 4.2e-68 256.1
Cre05g2563 . 198 446 WRKY Transcription Factor Family AT2G38470 55.4 2.6e-65 246.9
Cre10g0687 . 214 456 WRKY Transcription Factor Family AT2G38470 51.7 4.5e-62 236.1
Cre03g0335 . 236 476 WRKY Transcription Factor Family AT4G26440 52.5 8.2e-65 245.4
Cre03g1149 . 3 277 WRKY Transcription Factor Family AT2G34830 50.3 9.4e-61 231.5
Cre04g2145 . 90 317 WRKY Transcription Factor Family AT2G34830 55.3 4.1e-56 216.1
Cre05g0206 . 132 227 WRKY Transcription Factor Family AT2G34830 67.9 1.5e-37 154.5
Cre05g2563 . 108 491 WRKY Transcription Factor Family AT1G13960 56.5 1.1e-99 360.5
Cre11g0945 . 139 503 WRKY Transcription Factor Family AT1G13960 51.3 2.1e-82 303.1
Cre03g0335 . 227 517 WRKY Transcription Factor Family AT1G13960 50.8 6.0e-69 258.5
Cre10g2352 . 167 394 WRKY Transcription Factor Family AT1G13960 53.7 2.3e-65 246.5
Cre10g0687 . 206 456 WRKY Transcription Factor Family AT1G13960 51.7 1.3e-63 240.7
Cre04g1796 . 134 577 WRKY Transcription Factor Family AT4G04450 50.2 1.2e-95 347.4
Cre02g0538 . 108 516 WRKY Transcription Factor Family AT4G04450 51.5 3.6e-89 325.9
Cre06g2502 . 202 371 WRKY Transcription Factor Family AT4G04450 54.7 9.7e-42 168.3
Cre05g1530 . 73 164 WRKY Transcription Factor Family AT3G01970 77.2 1.3e-38 156.4
Cre07g1901 . 101 195 WRKY Transcription Factor Family AT3G01970 72.6 6.5e-38 154.1
Cre05g0812 . 167 341 WRKY Transcription Factor Family AT5G49520 50.8 2.9e-40 163.3
Cre01g0235 . 108 266 WRKY Transcription Factor Family AT5G49520 54.3 1.6e-38 157.5
Cre07g1140 . 67 176 WRKY Transcription Factor Family AT1G64000 78.2 2.5e-45 179.1
Cre08g0967 . 109 288 WRKY Transcription Factor Family AT1G69310 59.6 3.4e-51 199.1
Cre06g1206 . 135 231 WRKY Transcription Factor Family AT1G69310 76.3 3.9e-39 159.1
Cre06g2502 . 202 362 WRKY Transcription Factor Family AT1G62300 55.9 3.6e-41 166.8
Cre05g1165 . 216 328 WRKY Transcription Factor Family AT1G62300 69.9 5.2e-40 162.9
Cre02g0538 . 293 381 WRKY Transcription Factor Family AT1G18860 76.4 2.3e-37 154.1
Cre03g0976 . 47 247 WRKY Transcription Factor Family AT1G29280 53.6 2.1e-52 203.0
Cre07g0618 . 42 300 WRKY Transcription Factor Family AT3G58710 55.2 1.1e-46 184.1
Cre04g2045 . 77 250 WRKY Transcription Factor Family AT1G29860 57.6 2.4e-49 193.0
Cre01g0235 . 102 217 WRKY Transcription Factor Family AT1G29860 68.1 1.7e-39 160.2
Cre09g0718 . 16 366 WRKY Transcription Factor Family AT5G28650 50.4 7.6e-79 291.2
Cre07g0436 . 1 338 WRKY Transcription Factor Family AT5G28650 51.0 1.3e-78 290.4
Cre04g1325 . 133 284 WRKY Transcription Factor Family AT5G28650 61.8 6.7e-43 171.8
Cre02g1125 . 177 283 WRKY Transcription Factor Family AT5G28650 72.0 1.1e-40 164.5
Cre07g1901 . 97 195 WRKY Transcription Factor Family AT5G13080 82.8 3.5e-44 174.9
Cre05g1530 . 70 166 WRKY Transcription Factor Family AT5G13080 81.4 2.1e-41 165.6
Cre05g1165 . 65 327 WRKY Transcription Factor Family AT1G68150 52.9 1.7e-58 223.8
Cre02g0538 . 294 391 WRKY Transcription Factor Family AT1G68150 75.5 4.3e-38 156.0
Cre04g1796 . 332 429 WRKY Transcription Factor Family AT1G68150 74.5 6.2e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000978 3 3 1 1 3 3 4 3 3 2 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 2 3 4 3 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53706 PF03106 WRKY 3.20E-26 CL0274 Cre TF