Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1545 ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTTCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACTATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.24 MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHQEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21336149 21337087 - CrPI670011_05g015450.1 Cre05g1545 498058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1545 312 MobiDBLite consensus disorder prediction 1 47 - -
Cre05g1545 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cre05g1545 312 MobiDBLite consensus disorder prediction 1 17 - -
Cre05g1545 312 MobiDBLite consensus disorder prediction 285 312 - -
Cre05g1545 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre05g1545 312 Pfam TCP family transcription factor 73 179 IPR017887 -
Cre05g1545 312 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1013 Cre-Chr4:28748825 Cre05g1545 Cre-Chr5:21336149 7.60E-29 dispersed
Cre05g0956 Cre-Chr5:8825065 Cre05g1545 Cre-Chr5:21336149 1.30E-25 dispersed
Cre05g1545 Cre-Chr5:21336149 Cre06g0965 Cre-Chr6:3121043 1.90E-55 dispersed
Cre05g1545 Cre-Chr5:21336149 Cre01g1570 Cre-Chr1:28832522 1.80E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53707 PF03634 TCP 3.70E-31 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1545 - - - 0.0