Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1545 ATGGATCCTAAAACTAAAACCTCATCAACAACCAAGCAGCCCCAAGAAGTGGTAGCCAACTTTTTGAAGCCCCCAGAAGAAGAAGAAGAAGAGCATCAAGAAGAAGTAGACGAAGAATCAATCATGGGTGAAAATAAAGCAGGTGAAATAAAAGATTTCCAAATAGCAATTGCAGAGAAAGAAGAGGGCAAAAAACAGTTAGCCCCAAAACGAAGCTCAAACAAAGACCGTCACACGAAAGTGGAAGGCAGAGGGCGAAGAATCCGGATGCCAGCTCTATGTGCCGCTAGGATTTTTCAATTAACGAGGGAATTGGGTCATAAATCCGACGGCGAGACCATCCAGTGGTTGCTTCAGCAGGCGGAGCCGTCTATAATCGCAGCCACGGGGACAGGAACTATTCCAGCTTCTGCTCTAGCGGCGGCGGCAGGTTCTGTTTCGCAACAGGGGGCTTCTCTGTCGGCCGGATTGCACCAAAAATTGGAGGAATTAGGAGGTGGGGGGTCCAGTAGGGCCAATTGGGGGAATTTGGGGAGACCCCATTTGGCCGCCACACCCTCAGGGCTTTGGCCCTCATCTGTCACTGGCTTTGGCTTTCACTCTTCAACTGCTTCTGCTGCTGCTGTTGCTGCTCAATCAGCCACTAATTTACCTAATGAAACTTCAAATTACTTTCATAAACTTGGTTTCCCACCTTTTGATTGTTCCCCCACCAACATGGGTCCTATGAGTTTCACCTCTATTTTAGGTGCAAACACTCAACAATTACCTGGTTTGGAGCTTGGATTGTCCCAAGATGGCCATATTGGGGTTCTAAATCCTCAGGCGCTCAACCAGATTTACCAACAGATGGGACAGCCTAGAGTTCATCAGCAGCATCATCATCAACACCACCACCAGCAGGCTCCTGCTAAGGATGATTCTCAAGATTCAGGCTAG 939 48.24 MDPKTKTSSTTKQPQEVVANFLKPPEEEEEEHQEEVDEESIMGENKAGEIKDFQIAIAEKEEGKKQLAPKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAAGSVSQQGASLSAGLHQKLEELGGGGSSRANWGNLGRPHLAATPSGLWPSSVTGFGFHSSTASAAAVAAQSATNLPNETSNYFHKLGFPPFDCSPTNMGPMSFTSILGANTQQLPGLELGLSQDGHIGVLNPQALNQIYQQMGQPRVHQQHHHQHHHQQAPAKDDSQDSG 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21336149 21337087 - CrPI670011_05g015450.1 Cre05g1545 498058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1545 312 MobiDBLite consensus disorder prediction 1 47 - -
Cre05g1545 312 ProSiteProfiles TCP domain profile. 74 128 IPR017887 -
Cre05g1545 312 MobiDBLite consensus disorder prediction 1 17 - -
Cre05g1545 312 MobiDBLite consensus disorder prediction 285 312 - -
Cre05g1545 312 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 297 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cre05g1545 312 Pfam TCP family transcription factor 73 179 IPR017887 -
Cre05g1545 312 MobiDBLite consensus disorder prediction 61 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1545 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1013 Cre-Chr4:28748825 Cre05g1545 Cre-Chr5:21336149 7.60E-29 dispersed
Cre05g0956 Cre-Chr5:8825065 Cre05g1545 Cre-Chr5:21336149 1.30E-25 dispersed
Cre05g1545 Cre-Chr5:21336149 Cre06g0965 Cre-Chr6:3121043 1.90E-55 dispersed
Cre05g1545 Cre-Chr5:21336149 Cre01g1570 Cre-Chr1:28832522 1.80E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g1714 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.6e-68 255.0
Cre02g1732 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 2.1e-60 229.6
Cre06g0793 . 59 341 TCP Transcription Factor Family AT2G45680 54.5 4.2e-67 252.3
Cre05g2607 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 9.3e-41 165.2
Cre01g1570 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.8e-39 161.0
Cre11g1770 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.4e-36 151.4
Cre11g1770 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.6e-36 150.6
Cre05g1545 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.4e-60 229.2
Cre02g1732 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.5e-63 240.0
Cre09g1714 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 9.4e-63 237.3
Cre07g1995 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.4e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003722 3 3 3 4 3 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 0 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
53707 PF03634 TCP 3.70E-31 No_clan Cre TF