Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre05g1566 ATGCGATGTTTGATTTTTCACACACCCTTTTGGTTGTTTTTTGTGTTGGTGTCCAATTTCAAGCTCTGTTTTTCACAAGATTACACCACTGGCGACTCTCTGCCTGCGGCGGCGGCGCCGCCGGAGCAAAATACATGTAATGGGATTTTCTTAACCTACACGTTCTTTTCAAGGGAAAAAGAATTTCCCCATGTGAAGAATGTTTCTGCTCAGGCTTGGGCGTTCAGAGCTCAGGCCACCGTGCTGAACGCCGGCGCGACGGAGCTGGACGCTTGGAAGATGTATATTGGGTTTCAACATAGAGAGATTTTAGTGTCGGCGGCTGGTGCGGTGTTGGGGGACGGTTCGGATTTCCCCGCCGCCGTCGGGAAAGGGGTGATCTTAGCTGGATACACACAAGCGGACTTGAAAACCGCCATACAAACCGCCGGAGATTATAATCAAATGCAGGTGACAATTGATATCACCGGAACCCAATTCGGCGTGAAGAAGAATGGAATTCCGATGCCGAAGACAATTCGCCTTGAAAATGAAGGCTTTAAGTGTCCGCCGCCTCGTCGTCATCGCAACAAAAGTTATATGCATGTTTGCTGCAAGAAAGACCCAAAATTCAAGCAAAAACCACCAAAGAAGACCAAGTTTTTACCTCGACAGATCGGCGATCTCTCGCTCACCTACGACGTCATCCAAGCTTATGGGAACAACTATCTTGCACAAGTCACCATTGACAACAACAACCCTCTCGGCCGCCTCGACCATTGGAACTTAACTTGGGAATGGATGAGAGGAGAATTCATTTCCACCATGAGAGGAGCTTACACTCACAAAATTGACTACTCGGACTGCATCTTTGGCCCTCAAGGCCAATACTATCAAGATTTTGACTTCTCCCAAATCATGAATTGTGAGAAGAACCCCATCATCGCCGACCTCCCTTCCGATCGAGCCAACGATTCCAAGGTCGGAAAGTTACCCTTCTGTTGCAACAACGGCACCATCTTACCGCCACTGATGGATCAAAGCAAAGCAAGGTCCATTTTTCAGCTCCAAGTCTATAAGCTTCCTCCTGACTTCAACAGAACAGCCTTGTACCCTCCTCAAAAATGGAAGATCAACGGCATTCTTAACCCCAATTACAAATGTGGAGCTCCTATTAGAGTTGATCCAACACAATTTCCTGACTCAACTGGACTTCAATCCATAACCACAGCCATTGCAAGTTGGCAAGTGGTTTGCAATATTACTACTCCAAAACCCAAACAATCAAGATGTTGTGTTTCTTTCTCTGCTTATTATAATGACTCTGTTATCCCTTGCAATACTTGTGCTTGTGGATGTGATCAAACTCAAACTTGCGACCCAAATTCTTCCCCATTGCTTCTTCCACCAGAGGCCCTTTTAGTTCCATTTGACAATAGAACTTTAAAGGCAAAAGCTTGGGCCAAAATCAAACACTTTCCAATTCCAAAGAAACTCCCTTGTCCTGACAATTGTGGGGTTAGTTTAAATTGGCATATAAACTCAGATTATAACAGTGGTTGGACAGCTAGAATTACCCTTTTCAATTGGGAAGAATACCCTTTTGAGGATTGGTTTGCTGCTGTTCAATTGGATAAAGCTGCTAAAGGCTATGAGAATGTCTACTCTTTCAATGGGACTAAACTCCCACCAGATATGATCAAGAACACCATCTTGTTCCAAGGATTGGAAGGTCTTAATTACCTGATGGGGGAGATGAATGGGACGGACCCGAGATTCGATCCACGAGTACCGGGAAAGCAACAATCAGTAATCTCTTTCACTAAGAAGAATTTGAGGAACCTCAATATAAAGGAAGGAGATGGATTCCCTTCAAAGGTTTATTTCAATGGAGAAGAATGTGCACTTCCTCCTCATATTCCTTTAGGAAATGGTGCTGCTCATAGCCTCCATGTCAGCTCTGAACCTTTAATGCTGCTGCTCACAGTTATGGTTTTTTTCATTCTCTTCATCGATGGCTTTCATTGA 2007 44.69 MRCLIFHTPFWLFFVLVSNFKLCFSQDYTTGDSLPAAAAPPEQNTCNGIFLTYTFFSREKEFPHVKNVSAQAWAFRAQATVLNAGATELDAWKMYIGFQHREILVSAAGAVLGDGSDFPAAVGKGVILAGYTQADLKTAIQTAGDYNQMQVTIDITGTQFGVKKNGIPMPKTIRLENEGFKCPPPRRHRNKSYMHVCCKKDPKFKQKPPKKTKFLPRQIGDLSLTYDVIQAYGNNYLAQVTIDNNNPLGRLDHWNLTWEWMRGEFISTMRGAYTHKIDYSDCIFGPQGQYYQDFDFSQIMNCEKNPIIADLPSDRANDSKVGKLPFCCNNGTILPPLMDQSKARSIFQLQVYKLPPDFNRTALYPPQKWKINGILNPNYKCGAPIRVDPTQFPDSTGLQSITTAIASWQVVCNITTPKPKQSRCCVSFSAYYNDSVIPCNTCACGCDQTQTCDPNSSPLLLPPEALLVPFDNRTLKAKAWAKIKHFPIPKKLPCPDNCGVSLNWHINSDYNSGWTARITLFNWEEYPFEDWFAAVQLDKAAKGYENVYSFNGTKLPPDMIKNTILFQGLEGLNYLMGEMNGTDPRFDPRVPGKQQSVISFTKKNLRNLNIKEGDGFPSKVYFNGEECALPPHIPLGNGAAHSLHVSSEPLMLLLTVMVFFILFIDGFH 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23716397 23720013 + CrPI670011_05g015660.1 Cre05g1566 498079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre05g1566 668 PANTHER COBRA-LIKE PROTEIN 7 11 660 - -
Cre05g1566 668 Pfam COBRA-like protein 236 415 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre05g1566 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g1566 Cre-Chr5:23716397 Cre10g0772 Cre-Chr10:7555809 8.70E-292 dispersed
Cre05g1566 Cre-Chr5:23716397 Cre06g2413 Cre-Chr6:32019750 3.90E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre06g2414 . 48 447 COBRA Gene Family AT5G60920 80.3 3.3e-209 724.5
Cre07g1947 . 44 450 COBRA Gene Family AT5G60920 75.4 2.8e-200 694.9
Cre06g2413 . 55 452 COBRA Gene Family AT5G60920 69.1 5.5e-180 627.5
Cre07g1948 . 31 426 COBRA Gene Family AT5G60920 68.2 9.4e-180 626.7
Cre01g1500 . 37 434 COBRA Gene Family AT5G60920 59.8 5.4e-151 531.2
Cre05g1127 . 31 425 COBRA Gene Family AT5G60920 54.1 6.8e-130 461.1
Cre06g2414 . 22 451 COBRA Gene Family AT3G02210 74.2 1.2e-204 709.5
Cre07g1947 . 19 448 COBRA Gene Family AT3G02210 74.5 1.4e-203 706.1
Cre07g1948 . 5 429 COBRA Gene Family AT3G02210 66.6 1.4e-179 626.3
Cre06g2413 . 27 452 COBRA Gene Family AT3G02210 66.4 4.0e-179 624.8
Cre01g1500 . 11 430 COBRA Gene Family AT3G02210 58.7 2.9e-153 538.9
Cre05g1127 . 1 420 COBRA Gene Family AT3G02210 55.0 4.0e-139 491.9
Cre06g2414 . 21 446 COBRA Gene Family AT3G29810 75.2 8.5e-203 703.4
Cre07g1947 . 29 448 COBRA Gene Family AT3G29810 72.4 1.5e-194 676.0
Cre07g1948 . 14 428 COBRA Gene Family AT3G29810 66.3 1.4e-176 616.3
Cre06g2413 . 38 436 COBRA Gene Family AT3G29810 66.9 1.7e-174 609.4
Cre01g1500 . 25 435 COBRA Gene Family AT3G29810 58.6 5.8e-151 531.2
Cre05g1127 . 13 430 COBRA Gene Family AT3G29810 55.1 2.3e-139 492.7
Cre06g2413 . 32 363 COBRA Gene Family AT5G15630 83.4 3.3e-178 621.3
Cre07g1948 . 9 339 COBRA Gene Family AT5G15630 82.5 1.1e-176 616.3
Cre06g2414 . 31 361 COBRA Gene Family AT5G15630 73.2 1.7e-150 529.3
Cre07g1947 . 29 358 COBRA Gene Family AT5G15630 68.5 8.2e-145 510.4
Cre01g1500 . 15 341 COBRA Gene Family AT5G15630 62.1 9.4e-133 470.3
Cre05g1127 . 19 341 COBRA Gene Family AT5G15630 50.6 6.4e-97 351.3
Cre06g2414 . 19 224 COBRA Gene Family AT5G60950 57.5 3.3e-64 241.9
Cre07g1947 . 27 220 COBRA Gene Family AT5G60950 60.0 5.6e-64 241.1
Cre07g1948 . 27 207 COBRA Gene Family AT5G60950 57.5 2.0e-58 222.6
Cre06g2413 . 51 231 COBRA Gene Family AT5G60950 58.0 2.7e-58 222.2
Cre01g1500 . 33 213 COBRA Gene Family AT5G60950 52.5 2.3e-49 192.6
Cre05g1127 . 12 413 COBRA Gene Family AT1G09790 60.2 1.7e-150 529.6
Cre07g1947 . 25 428 COBRA Gene Family AT1G09790 54.0 2.9e-134 475.7
Cre06g2413 . 41 434 COBRA Gene Family AT1G09790 53.7 3.2e-133 472.2
Cre06g2414 . 32 432 COBRA Gene Family AT1G09790 53.3 7.9e-132 467.6
Cre07g1948 . 3 410 COBRA Gene Family AT1G09790 51.1 8.2e-129 457.6
Cre05g0778 . 34 643 COBRA Gene Family AT4G16120 66.7 1.3e-255 879.4
Cre10g0772 . 59 667 COBRA Gene Family AT4G16120 54.3 1.2e-205 713.4
Cre05g1566 . 42 646 COBRA Gene Family AT4G16120 53.1 2.2e-202 702.6
Cre05g0778 . 11 649 COBRA Gene Family AT3G16860 63.1 3.3e-243 838.2
Cre10g0772 . 59 656 COBRA Gene Family AT3G16860 53.0 9.7e-195 677.2
Cre05g1566 . 42 647 COBRA Gene Family AT3G16860 52.0 9.1e-193 670.6
Cre05g0778 . 7 639 COBRA Gene Family AT5G49270 61.0 7.7e-240 827.0
Cre10g0772 . 59 654 COBRA Gene Family AT5G49270 52.3 5.6e-198 688.0
Cre05g1566 . 35 642 COBRA Gene Family AT5G49270 51.4 2.1e-192 669.5
Cre10g0772 . 55 674 COBRA Gene Family AT3G20580 62.8 6.4e-250 860.5
Cre05g1566 . 12 662 COBRA Gene Family AT3G20580 60.3 2.7e-248 855.1
Cre05g0778 . 27 627 COBRA Gene Family AT3G20580 54.9 3.3e-206 715.3
Cre10g0772 . 59 675 COBRA Gene Family AT4G27110 63.3 2.6e-243 838.6
Cre05g1566 . 22 653 COBRA Gene Family AT4G27110 58.6 7.5e-227 783.9
Cre05g0778 . 24 645 COBRA Gene Family AT4G27110 51.9 2.5e-198 689.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002898 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 1 1 2 2 55